J. Holden

发表

Phosphoenolpyruvate Synthetase from the Hyperthermophilic Archaeon Pyrococcus furiosus

M. Adams, A. Hutchins, J. Holden, 2001, Journal of bacteriology.

Characterization of Dissimilatory Fe(III) versus NO3− Reduction in the Hyperthermophilic Archaeon Pyrobaculum aerophilum

J. Holden, L. Feinberg, 2006, Journal of bacteriology.

Biological iron-sulfur storage in a thioferrate-protein nanoparticle

Jingchuan Sun, Huilin Li, M. Adams, 2017, Nature Communications.

Hydrothermal Chimney Distribution on the Endeavour Segment, Juan de Fuca Ridge

H. Thomas, D. Caress, D. Clague, 2020, Geochemistry, Geophysics, Geosystems.

Abundance and Distribution of Hydrothermal Chimneys and Mounds on the Endeavour Ridge Determined by 1-m Resolution AUV Multibeam Mapping Surveys

H. Thomas, D. Caress, D. Clague, 2008 .

Thermophilic and hyperthermophilic microorganisms in 3–30°C hydrothermal fluids following a deep-sea volcanic eruption

J. Baross, J. Holden, M. Summit, 1998 .

Magnetite formation from ferrihydrite by hyperthermophilic archaea from Endeavour Segment, Juan de Fuca Ridge hydrothermal vent chimneys

M. Dyar, J. Holden, E. Breves, 2014, Geobiology.

Key Role for Sulfur in Peptide Metabolism and in Regulation of Three Hydrogenases in the Hyperthermophilic ArchaeonPyrococcus furiosus

M. Adams, K. Ma, A. Grunden, 2001, Journal of bacteriology.

pathway in the hyperthermophilic Pyrococcus sp. ST04

J. Holden, D. Seo, Jong-Hyun Jung, 2014 .

Nonequilibrium clumped isotope signals in microbial methane

C. N. Sutcliffe, M. Könneke, A. Hristov, 2015, Science.

Hydrogen and thiosulfate limits for growth of a thermophilic, autotrophic Desulfurobacterium species from a deep-sea hydrothermal vent.

M. Lilley, D. Butterfield, Lucy C. Stewart, 2016, Environmental microbiology reports.

Enhanced thermotolerance by hydrostatic pressure in the deep-sea hyperthermophile Pyrococcus strain ES4

J. Baross, J. Holden, 1995 .

Lower hydrogen flux leads to larger carbon isotopic fractionation of methane and biomarkers during hydrogenotrophic methanogenesis

D. LaRowe, S. Q. Lang, J. Holden, 2020 .

Citric Acid Cycle in the Hyperthermophilic Archaeon Pyrobaculum islandicum Grown Autotrophically, Heterotrophically, and Mixotrophically with Acetate

J. Holden, Yajing Hu, 2006, Journal of bacteriology.

Seafloor Incubation Experiment with Deep-Sea Hydrothermal Vent Fluid Reveals Effect of Pressure and Lag Time on Autotrophic Microbial Communities

J. Vallino, B. Larson, J. Huber, 2020, Applied and Environmental Microbiology.

Spectral and morphological characteristics of synthetic nanophase iron (oxyhydr)oxides

M. Dyar, S. Jaret, J. Holden, 2017, Physics and Chemistry of Minerals.

Hydrogen Production and Enzyme Activities in the Hyperthermophile Thermococcus paralvinellae Grown on Maltose, Tryptone, and Agricultural Waste

J. Holden, Sarah A. Hensley, E. Moreira, 2016, Front. Microbiol..

Illuminating Subseafloor Ecosystems Using Microbial Tracers

J. Baross, J. Holden, M. Holland, 2013 .

Thermophilic and hyperthermophilic microorganisms in 3–30°C hydrothermal fluids following a deep-sea volcanic eruption

J. Baross, J. Holden, M. Summit, 1998 .

Biological colonization of new hydrothermal vents following an eruption on Juan de Fuca Ridge

G. Massoth, V. Tunnicliffe, D. Butterfield, 1997 .

Characterization of Dissimilatory Fe(III) versus NO3− Reduction in the Hyperthermophilic Archaeon Pyrobaculum aerophilum

J. Holden, L. Feinberg, 2006 .

Growth kinetics and energetics of a deep-sea hyperthermophilic methanogen under varying environmental conditions.

J. Huber, D. Butterfield, J. Holden, 2013, Environmental microbiology reports.

Enhanced thermotolerance by hydrostatic pressure in the deep-sea hyperthermophile Pyrococcus strain ES4

J. Baross, J. Holden, 1995 .

Spectral Detection of Nanophase Iron Minerals Produced by Fe(III)-Reducing Hyperthermophilic Crenarchaea

M. Dyar, J. Holden, E. Sklute, 2022, Astrobiology.

Experimental investigation on the controls of clumped isotopologue and hydrogen isotope ratios in microbial methane

M. Könneke, K. Hinrichs, Lucy C. Stewart, 2018, Geochimica et Cosmochimica Acta.

Characterization of malate dehydrogenase from the hyperthermophilic archaeon Pyrobaculum islandicum

J. Holden, Yajing Hu, Lynda J. Yennaco, 2007, Extremophiles.

Complete Genome Sequence of the Hyperthermophilic Archaeon Thermococcus sp. Strain CL1, Isolated from a Paralvinella sp. Polychaete Worm Collected from a Hydrothermal Vent

Hakdong Shin, Ju-Hoon Lee, S. Ryu, 2012, Journal of bacteriology.

Diversity among three novel groups of hyperthermophilic deep-sea Thermococcus species from three sites in the northeastern Pacific Ocean.

J. Baross, K. Takai, J. Holden, 2001, FEMS microbiology ecology.

Molecular cloning and enzymatic characterization of cyclomaltodextrinase from hyperthermophilic archaeon Thermococcus sp. CL1.

S. Kang, J. Holden, J. Cha, 2013, Journal of microbiology and biotechnology.

Alterations of the human gut microbiome in multiple sclerosis

Laura M Cox, Stephanie Tankou, Tanuja Chitnis, 2016, Nature Communications.

Desulfovulcanus ferrireducens gen. nov., sp. nov., a thermophilic autotrophic iron and sulfate-reducing bacterium from subseafloor basalt that grows on akaganéite and lepidocrocite minerals

J. Holden, S. Kashyap, M. Musa, 2022, Extremophiles : life under extreme conditions.

Draft Genome Sequence of Desulfurobacterium thermolithotrophum Strain HR11, a Novel Thermophilic Autotrophic Subspecies from a Deep-Sea Hydrothermal Vent

J. Holden, S. Kashyap, Collin P Bardwell, 2020, Microbiology Resource Announcements.

Pyrodictium delaneyi sp. nov., a hyperthermophilic autotrophic archaeon that reduces Fe(III) oxide and nitrate.

J. Holden, Jong-Hyun Jung, Cheon-Seok Park, 2016, International journal of systematic and evolutionary microbiology.

Methanocaldococcus bathoardescens sp. nov., a hyperthermophilic methanogen isolated from a volcanically active deep-sea hydrothermal vent.

Lucy C. Stewart, Soon-Wo Kwon, J. Holden, 2015, International journal of systematic and evolutionary microbiology.

Thermococcus paralvinellae sp. nov. and Thermococcus cleftensis sp. nov. of hyperthermophilic heterotrophs from deep-sea hydrothermal vents.

J. Holden, Cheon-Seok Park, Sarah A. Hensley, 2014, International journal of systematic and evolutionary microbiology.

Bioinformatic and biochemical analysis of a novel maltose-forming α-amylase of the GH57 family in the hyperthermophilic archaeon Thermococcus sp. CL1.

J. Holden, D. Seo, Eun-Jung Jeon, 2014, Enzyme and microbial technology.

Maltose-forming α-amylase from the hyperthermophilic archaeon Pyrococcus sp. ST04

J. Holden, D. Seo, Cheon-Seok Park, 2014, Applied Microbiology and Biotechnology.

Heat shock response in hyperthermophilic microorganisms

J. Baross, J. Holden, 1999 .

Hyperthermophile-Metal Interactions in Hydrothermal Environments

M. Adams, J. Holden, A. Menon, 2011 .

Structural features underlying the selective cleavage of a novel exo-type maltose-forming amylase from Pyrococcus sp. ST04.

E. Woo, Kwang-Hyun Park, J. Holden, 2014, Acta crystallographica. Section D, Biological crystallography.

Acceptor dependent catalytic properties of GH57 4-α-glucanotransferase from Pyrococcus sp. ST04

E. Woo, J. Holden, D. Seo, 2022, Frontiers in Microbiology.

Maltose-forming α-amylase from the hyperthermophilic archaeon Pyrococcus sp. ST04

J. Holden, D. Seo, Cheon-Seok Park, 2013, Applied Microbiology and Biotechnology.

Complete Genome Sequence of the Hyperthermophilic Archaeon Pyrococcus sp. Strain ST04, Isolated from a Deep-Sea Hydrothermal Sulfide Chimney on the Juan de Fuca Ridge

Wooki Kim, H. Kim, Hakdong Shin, 2012, Journal of bacteriology.

Production of Hydrogen from α-1,4- and β-1,4-Linked Saccharides by Marine Hyperthermophilic Archaea

J. Holden, D. Seo, Cheon-Seok Park, 2011, Applied and Environmental Microbiology.

Abundances of Hyperthermophilic Autotrophic Fe(III) Oxide Reducers and Heterotrophs in Hydrothermal Sulfide Chimneys of the Northeastern Pacific Ocean

D. Kelley, J. Holden, H. C. Ver Eecke, 2008, Applied and Environmental Microbiology.

Broad substrate specificity of a hyperthermophilic α-glucosidase from Pyrobaculum arsenaticum

J. Holden, D. Seo, Jong-Hyun Jung, 2016, Food Science and Biotechnology.

Extremophiles: Hot Environments

J. Holden, 2009 .

Identification and Characterization of an Archaeal Kojibiose Catabolic Pathway in the Hyperthermophilic Pyrococcus sp. Strain ST04

J. Holden, D. Seo, Cheon-Seok Park, 2014, Journal of bacteriology.

Constraints on Anaerobic Respiration in the Hyperthermophilic Archaea Pyrobaculum islandicum and Pyrobaculum aerophilum

R. Vachet, J. Holden, L. Feinberg, 2007, Applied and Environmental Microbiology.

Microbial iron respiration near 100°C

James F. Holden, Lawrence F. Feinberg, J. Holden, 2005, SPIE Optics + Photonics.

Formate and hydrogen in hydrothermal vents and their use by extremely thermophilic methanogens and heterotrophs

J. Holden, Harita Sistu, 2023, Frontiers in Microbiology.

Microbe-Mineral Interaction and Novel Proteins for Iron Oxide Mineral Reduction in the Hyperthermophilic Crenarchaeon Pyrodictium delaneyi

J. Holden, S. Kashyap, 2021, Applied and Environmental Microbiology.

Reduction and Morphological Transformation of Synthetic Nanophase Iron Oxide Minerals by Hyperthermophilic Archaea

M. Dyar, J. Holden, E. Sklute, 2018, Front. Microbiol..

Hydrogen Limitation and Syntrophic Growth among Natural Assemblages of Thermophilic Methanogens at Deep-sea Hydrothermal Vents

H. Morrison, J. Huber, Lucy C. Stewart, 2016, Front. Microbiol..

Linkages between mineralogy, fluid chemistry, and microbial communities within hydrothermal chimneys from the Endeavour Segment, Juan de Fuca Ridge

M. Lilley, M. Hannington, J. Bishop, 2016, Geochemistry Geophysics Geosystems.

Hydrogen-limited growth of hyperthermophilic methanogens at deep-sea hydrothermal vents

M. Lilley, E. Olson, L. Evans, 2012, Proceedings of the National Academy of Sciences.

Endeavour Segment of the Juan de Fuca Ridge: One of the Most Remarkable Places on Earth

M. Lilley, D. Caress, D. Clague, 2012 .

Biogeochemical processes at hydrothermal vents : microbes and minerals, bioenergetics, and carbon fluxes

M. Schulte, K. Rogers, J. Holden, 2012 .

Production of Hydrogen from (cid:1) -1,4- and (cid:2) -1,4-Linked Saccharides by Marine Hyperthermophilic Archaea (cid:1) †

J. Holden, D. Seo, Cheon-Seok Park, 2011 .

Complete genome sequence of hyperthermophilic archaeon Thermococcus sp. ES1.

Ju-Hoon Lee, J. Holden, D. Seo, 2014, Journal of biotechnology.

Identification and Characterization of an Archaeal Kojibiose Catabolic Pathway in the Hyperthermophilic Pyrococcus sp . Strain ST 04

J. Holden, D. Seo, Jong‐Hyun Jung, 2014 .

On the Potential for Bioenergy and Biofuels from Hydrothermal Vent Microbes

Peter R. Girguis, James F. Holden, P. Girguis, 2012 .

Determination of polydextrose in foods by ion chromatography: collaborative study.

J. Holden, S. Craig, M. Khaled, 2001, Journal of AOAC International.

Polydextrose as soluble fiber: physiological and analytical aspects

J. Holden, H. Frier, S. Craig, 1998 .

Identification of 2D-gel proteins: A comparison of MALDI/TOF peptide mass mapping to μ LC-ESI tandem mass spectrometry

Carol S. Giometti, John R. Yates, Gary J. Olsen, 2003, Journal of the American Society for Mass Spectrometry.

Formate hydrogenlyase and formate secretion ameliorate H2 inhibition in the hyperthermophilic archaeon Thermococcus paralvinellae

Cem Meydan, J. Holden, B. D. Topçuoglu, 2017, Environmental microbiology.

Sulfide geochronology along the Endeavour Segment of the Juan de Fuca Ridge

M. Hannington, D. Clague, J. Delaney, 2013 .

Growth Kinetics, Carbon Isotope Fractionation, and Gene Expression in the Hyperthermophile Methanocaldococcus jannaschii during Hydrogen-Limited Growth and Interspecies Hydrogen Transfer

Cem Meydan, J. Holden, Tran B. Nguyen, 2019, Applied and Environmental Microbiology.

The Upper Temperature Limit for Life Based on Hyperthermophile Culture Experiments and Field Observations

R. Daniel, J. Holden, 2013 .

The stability of biomolecules and the implications for life at high temperatures

R. Daniel, J. Holden, R. Eckert, 2013 .

Overview of hyperthermophiles and their heat-shock proteins.

J. Baross, J. Holden, 1996, Advances in protein chemistry.

Discovery of Nascent Vents and Recent Colonization Associated with(Re)activated Hydrothermal Vent Fields by the GALREX 2011 Expedition on the Galápagos Rift

T. Shank, S. Herrera, C. Munro, 2011 .

Seafloor eruptions and evolution of hydrothermal fluid chemistry

R. Feely, G. Massoth, M. Lilley, 1997, Philosophical Transactions of the Royal Society of London. Series A: Mathematical, Physical and Engineering Sciences.

Enhanced thermotolerance and temperature-induced changes in protein composition in the hyperthermophilic archaeon ES4

J. Baross, J. Holden, 1993, Journal of bacteriology.

Magma‐To‐Microbe Networks in the Context of Sulfide Hosted Microbial Ecosystems

J. Baross, M. Schrenk, J. Holden, 2013 .

Modeling the Impact of Diffuse Vent Microorganisms Along Mid‐Ocean Ridges and Flanks

J. Huber, J. Holden, 2013 .

Polydextrose as Soluble Fiber and Complex Carbohydrate

J. Holden, H. Frier, S. Craig, 1999 .

Microbe-metal interactions in marine hydrothermal environments.

M. Adams, J. Holden, 2003, Current opinion in chemical biology.

Identification of Membrane Proteins in the Hyperthermophilic Archaeon Pyrococcus Furiosus Using Proteomics and Prediction Programs

M. Adams, John R. Yates III, J. Holden, 2001, Comparative and functional genomics.

Direct Measurements of Hydrothermal Heat Output at Juan de Fuca Ridge

E. Olson, R. Hurt, L. Germanovich, 2009 .

Fluid geochemistry, local hydrology, and metabolic activity define methanogen community size and composition in deep-sea hydrothermal vents

J. Vallino, B. Larson, J. Huber, 2019, The ISME Journal.

Determination of polydextrose as dietary fiber in foods.

J. Holden, S. Craig, M. Khaled, 2000, Journal of AOAC International.

Bulking agents: polydextrose

J. Anderson, J. Holden, S. Craig, 2007 .

Tectonic and Volcanic Character of the Endeavour Ridge Axis From 1-m Resolution AUV Multibeam Mapping Surveys

H. Thomas, D. Caress, D. Clague, 2008 .

Extremophiles: Hot Environments ☆

J. Holden, B. D. Topçuoglu, 2019, Reference Module in Life Sciences.

Growth Kinetics, Carbon Isotope Fractionation, and Gene Expression in the Hyperthermophile Methanocaldococcus jannaschii during Hydrogen-Limited Growth and Interspecies Hydrogen Transfer

Cem Meydan, J. Holden, Tran B. Nguyen, 2019, Applied and Environmental Microbiology.

Nonequilibrium clumped isotope signals in microbial methane

C. N. Sutcliffe, M. Könneke, A. Hristov, 2015, Science.