I. Borovok

发表

Draft Genome Sequence of the Cellulolytic Bacterium Clostridium papyrosolvens C7 (ATCC 700395)

Jamie H. D. Cate, E. Bayer, R. Lamed, 2013, Genome Announcements.

Genetic makeup of the Corynebacterium glutamicum LexA regulon deduced from comparative transcriptomics and in vitro DNA band shift assays.

A. Hüser, K. Brinkrolf, I. Brune, 2009, Microbiology.

A new perspective on lysogeny: prophages as active regulatory switches of bacteria

R. Feiner, I. Borovok, A. Herskovits, 2015, Nature Reviews Microbiology.

Prophage Excision Activates Listeria Competence Genes that Promote Phagosomal Escape and Virulence

I. Borovok, A. Herskovits, Lev Rabinovich, 2012, Cell.

Crystal Structure of an Uncommon Cellulosome-Related Protein Module from Ruminococcus flavefaciens That Resembles Papain-Like Cysteine Peptidases

B. White, E. Bayer, R. Lamed, 2013, PloS one.

Structure and regulation of the cellulose degradome in Clostridium cellulolyticum

Christopher L. Hemme, Jizhong Zhou, E. Bayer, 2013, Biotechnology for Biofuels.

Listeria monocytogenes TcyKLMN Cystine/Cysteine Transporter Facilitates Glutathione Synthesis and Virulence Gene Expression

O. Lewinson, I. Borovok, A. Herskovits, 2022, mBio.

Distribution and infection-related functions of bacillithiol in Staphylococcus aureus.

M. Hecker, M. Lalk, J. Mostertz, 2013, International journal of medical microbiology : IJMM.

Ruminococcal cellulosome systems from rumen to human.

B. White, E. Bayer, H. Flint, 2015, Environmental microbiology.

Cellulosomics, a Gene-Centric Approach to Investigating the Intraspecific Diversity and Adaptation of Ruminococcus flavefaciens within the Rumen

N. Goldenfeld, K. Nelson, Jennifer M. Brulc, 2011, PloS one.

Three cellulosomal xylanase genes inClostridium thermocellum are regulated by both vegetative SigA (σA) and alternative SigI6 (σI6) factors

L. Lynd, E. Bayer, R. Lamed, 2015, FEBS letters.

Recent advances in the structure and function of isopenicillin N synthase

I. Borovok, G. Cohen, Y. Aharonowitz, 2004, Antonie van Leeuwenhoek.

Integrative Genomic Analysis Identifies Isoleucine and CodY as Regulators of Listeria monocytogenes Virulence

E. Ruppin, I. Borovok, A. Herskovits, 2012, PLoS genetics.

A Multidomain Fusion Protein in Listeria monocytogenes Catalyzes the Two Primary Activities for Glutathione Biosynthesis

W. Goebel, J. Kreft, Michaela Yanku, 2005, Journal of bacteriology.

A dual-function phage regulator controls the response of cohabiting phage elements via regulation of the bacterial SOS response

I. Borovok, A. Herskovits, N. Sigal, 2022, Cell reports.

A GC-Rich Prophage-Like Genomic Region of Mycoplasma bovirhinis HAZ141_2 Carries a Gene Cluster Encoding Resistance to Kanamycin and Neomycin

I. Borovok, I. Lysnyansky, 2020, Antimicrobial Agents and Chemotherapy.

Ferrous active site of isopenicillin N synthase: genetic and sequence analysis of the endogenous ligands.

I. Borovok, G. Cohen, Y. Aharonowitz, 1996, Biochemistry.

Application of Long Sequence Reads To Improve Genomes for Clostridium thermocellum AD2, Clostridium thermocellum LQRI, and Pelosinus fermentans R7

Sagar M. Utturkar, Jizhong Zhou, N. Kyrpides, 2016, Genome Announcements.

Structural characterization of a novel autonomous cohesin from Ruminococcus flavefaciens.

E. Bayer, R. Lamed, F. Frolow, 2014, Acta crystallographica. Section F, Structural biology communications.

Distinctive ligand‐binding specificities of tandem PA14 biomass‐sensory elements from Clostridium thermocellum and Clostridium clariflavum

O. Livnah, E. Bayer, R. Lamed, 2019, Proteins.

Bacterial cadherin domains as carbohydrate binding modules: determination of affinity constants to insoluble complex polysaccharides.

E. Bayer, R. Lamed, R. Weiner, 2012, Methods in molecular biology.

Cadherin Domains in the Polysaccharide-Degrading Marine Bacterium Saccharophagus degradans 2-40 Are Carbohydrate-Binding Modules

E. Bayer, R. Lamed, R. Weiner, 2010, Journal of bacteriology.

Diamide Triggers Mainly S Thiolations in the Cytoplasmic Proteomes of Bacillus subtilis and Staphylococcus aureus

Manuel Liebeke, M. Hecker, M. Lalk, 2009, Journal of bacteriology.

An Extended Cyclic Di-GMP Network in the Predatory Bacterium Bdellovibrio bacteriovorus

S. Pietrokovski, Timo Glatter, U. Jenal, 2015, Journal of bacteriology.

Genomics-based epidemiology of bovine Mycoplasma bovis strains in Israel

U. Gophna, L. Fox, I. Borovok, 2020, BMC Genomics.

Structure of a family 3a carbohydrate-binding module from the cellulosomal scaffoldin CipA of Clostridium thermocellum with flanking linkers: implications for cellulosome structure.

E. Bayer, R. Lamed, L. Shimon, 2013, Acta crystallographica. Section F, Structural biology and crystallization communications.

High Prevalence of Diverse Insertion Sequences within the Ribosomal RNA 1 Operons of Mycoplasma

I. Borovok, Y. Nachum-Biala, S. Harrus, 2016 .

High Efficiency of a Sequential Recombinase-Mediated Cassette Exchange Reaction in Escherichia coli

M. Kolot, I. Borovok, A. Kotlyar, 2010, Journal of Molecular Microbiology and Biotechnology.

Temperate bacteriophages as regulators of host behavior.

I. Borovok, A. Herskovits, T. Argov, 2017, Current opinion in microbiology.

Streptomyces spp. contain class Ia and class II ribonucleotide reductases: expression analysis of the genes in vegetative growth.

A. Holmgren, I. Borovok, F. Åslund, 2002, Microbiology.

Analysis of Transcription of theStaphylococcus aureus Aerobic Class Ib and Anaerobic Class III Ribonucleotide Reductase Genes in Response to Oxygen

Rachel Schreiber, Ilya Borovok, Yair Aharonowitz, 2001, Journal of bacteriology.

Staphylococcus aureus NrdH Redoxin Is a Reductant of the Class Ib Ribonucleotide Reductase

Michaela Yanku, I. Borovok, G. Cohen, 2010, Journal of bacteriology.

The Streptomyces NrdR Transcriptional Regulator Is a Zn Ribbon/ATP Cone Protein That Binds to the Promoter Regions of Class Ia and Class II Ribonucleotide Reductase Operons

I. Borovok, G. Cohen, Y. Aharonowitz, 2006, Journal of bacteriology.

Diversity and Strain Specificity of Plant Cell Wall Degrading Enzymes Revealed by the Draft Genome of Ruminococcus flavefaciens FD-1

Alvaro G. Hernandez, B. Henrissat, D. Antonopoulos, 2009, PloS one.

Coordination of cohabiting phage elements supports bacteria–phage cooperation

I. Borovok, A. Herskovits, T. Argov, 2019, Nature Communications.

Identification and Characterization of gshA, a Gene Encoding the Glutamate-Cysteine Ligase in the Halophilic Archaeon Haloferax volcanii

Michaela Yanku, I. Borovok, G. Cohen, 2009, Journal of bacteriology.

The unique set of putative membrane-associated anti-sigma factors in Clostridium thermocellum suggests a novel extracellular carbohydrate-sensing mechanism involved in gene regulation.

E. Bayer, R. Lamed, Y. Shoham, 2010, FEMS microbiology letters.

Active Lysogeny in Listeria Monocytogenes Is a Bacteria-Phage Adaptive Response in the Mammalian Environment

I. Borovok, A. Herskovits, T. Argov, 2020, Cell reports.

Pan-Cellulosomics of Mesophilic Clostridia: Variations on a Theme

B. Henrissat, E. Bayer, R. Lamed, 2017, Microorganisms.

The aadE*-sat4-aphA-3 Gene Cluster of Mycoplasma bovirhinis HAZ141_2 Undergoes Genomic Rearrangements Influencing the Primary Promoter Sequence

I. Borovok, I. Lysnyansky, 2021, Antibiotics.

Functional phylotyping approach for assessing intraspecific diversity of Ruminococcus albus within the rumen microbiome.

B. White, E. Bayer, I. Mizrahi, 2015, FEMS microbiology letters.

Rumen Cellulosomics: Divergent Fiber-Degrading Strategies Revealed by Comparative Genome-Wide Analysis of Six Ruminococcal Strains

B. Henrissat, B. White, E. Bayer, 2014, PloS one.

Cell Surface Enzyme Attachment Is Mediated by Family 37 Carbohydrate-Binding Modules, Unique to Ruminococcus albus

E. Bayer, R. Lamed, Zhongtang Yu, 2008, Journal of bacteriology.

A Dual-Function Phage Regulator Controls the Response of Cohabiting Phage Elements via Regulation of the SOS Response

I. Borovok, A. Herskovits, N. Sigal, 2021, SSRN Electronic Journal.

Activities for Glutathione Biosynthesis Catalyzes the Two Primary monocytogenes Listeria A Multidomain Fusion Protein in

W. Goebel, J. Kreft, Michaela Yanku, 2005 .

Controlled branched-chain amino acids auxotrophy in Listeria monocytogenes allows isoleucine to serve as a host signal and virulence effector

I. Borovok, A. Herskovits, N. Sigal, 2018, PLoS genetics.

Noncellulosomal cohesin- and dockerin-like modules in the three domains of life.

E. Bayer, R. Lamed, I. Borovok, 2009, FEMS microbiology letters.

Fecal Proteases from Pouchitis Patients Activate Protease Activating Receptor-2 to Disrupt the Epithelial Barrier.

I. Dotan, I. Carroll, N. Maharshak, 2019, Journal of Crohn's & colitis.

Decoding Biomass-Sensing Regulons of Clostridium thermocellum Alternative Sigma-I Factors in a Heterologous Bacillus subtilis Host System

E. Bayer, R. Lamed, Y. Shoham, 2016, PloS one.

Draft Genome Sequences for Clostridium thermocellum Wild-Type Strain YS and Derived Cellulose Adhesion-Defective Mutant Strain AD2

Miriam L. Land, Raphael Lamed, Edward A. Bayer, 2012, Journal of bacteriology.

Complete Genome Sequence of the Complex Carbohydrate-Degrading Marine Bacterium, Saccharophagus degradans Strain 2-40T

B. Henrissat, P. Richardson, E. Bayer, 2008, PLoS genetics.

Complete Genome Sequence of the Complex Carbohydrate-Degrading Marine Bacterium , Saccharophagus degradans Strain 2-40 T

B. Henrissat, I. Zhulin, R. Lamed, 2008 .

Quorum Sensing in Staphylococci Is Regulated via Phosphorylation of Three Conserved Histidine Residues*

I. Borovok, R. Jayaswal, V. Singh, 2004, Journal of Biological Chemistry.

Transcriptional Regulation of the Staphylococcus aureus Thioredoxin and Thioredoxin Reductase Genes in Response to Oxygen and Disulfide Stress

I. Borovok, G. Cohen, Y. Aharonowitz, 2004, Journal of bacteriology.

Noncellulosomal cohesin from the hyperthermophilic archaeon Archaeoglobus fulgidus

E. Bayer, R. Lamed, F. Frolow, 2010, Proteins.

High Prevalence of Diverse Insertion Sequences within the rRNA Operons of Mycoplasma bovis

I. Borovok, Y. Nachum-Biala, S. Harrus, 2016, Applied and Environmental Microbiology.

Cellulosome gene cluster analysis for gauging the diversity of the ruminal cellulolytic bacterium Ruminococcus flavefaciens.

Raphael Lamed, Edward A Bayer, Ilya Borovok, 2008, FEMS microbiology letters.

Alternative oxygen‐dependent and oxygen‐independent ribonucleotide reductases in Streptomyces: cross‐regulation and physiological role in response to oxygen limitation

K. Chater, Michaela Yanku, I. Borovok, 2004, Molecular microbiology.

Structure-function studies of the non-heme iron active site of isopenicillin N synthase: some implications for catalysis.

F. Frolow, I. Borovok, G. Cohen, 2000, Biophysical chemistry.

How does cellulosome composition influence deconstruction of lignocellulosic substrates in Clostridium (Ruminiclostridium) thermocellum DSM 1313?

E. Bayer, R. Lamed, Shahar Yoav, 2017, Biotechnology for Biofuels.

Implications of the Inability of Listeria monocytogenes EGD-e To Grow Anaerobically Due to a Deletion in the Class III NrdD Ribonucleotide Reductase for Its Use as a Model Laboratory Strain

D. Logan, J. Kreft, I. Borovok, 2011, Journal of bacteriology.

NrdR Controls Differential Expression of the Escherichia coli Ribonucleotide Reductase Genes

B. Sjöberg, E. Torrents, I. Borovok, 2007, Journal of bacteriology.

Cellulosomics of the cellulolytic thermophile Clostridium clariflavum

E. Bayer, R. Lamed, B. Dassa, 2014, Biotechnology for Biofuels.

Staphylococcus aureus ArcR Controls Expression of the Arginine Deiminase Operon

S. Engelmann, C. Kohler, J. Makhlin, 2007, Journal of bacteriology.

Listeria monocytogenes TcyKLMN Cystine/Cysteine Transporter Facilitates Glutathione Synthesis and Virulence Gene Expression

O. Lewinson, I. Borovok, A. Herskovits, 2021, bioRxiv.

A Metzincin and TIMP-Like Protein Pair of a Phage Origin Sensitize Listeria monocytogenes to Phage Lysins and Other Cell Wall Targeting Agents

I. Borovok, A. Herskovits, N. Sigal, 2021, Microorganisms.

The metabolic regulator CodY links Listeria monocytogenes metabolism to virulence by directly activating the virulence regulatory gene prfA

A. Sonenshein, B. Belitsky, I. Borovok, 2015, Molecular microbiology.

Renewable fatty acid ester production in Clostridium

Haibo Huang, Jie Zhang, Pixiang Wang, 2020, Nature Communications.

Novel ATP-cone-driven allosteric regulation of ribonucleotide reductase via the radical-generating subunit

B. Sjöberg, M. Sahlin, D. Logan, 2018, eLife.

Unique ATP-cone-driven allosteric regulation of ribonucleotide reductase via the radical-generating subunit

B. Sjöberg, M. Sahlin, D. Logan, 2017, bioRxiv.

Functional Analysis of the Streptomyces coelicolor NrdR ATP-Cone Domain: Role in Nucleotide Binding, Oligomerization, and DNA Interactions

I. Borovok, A. Q. Hassan, G. Cohen, 2008, Journal of bacteriology.

Coenzyme B12 Controls Transcription of the Streptomyces Class Ia Ribonucleotide Reductase nrdABS Operon via a Riboswitch Mechanism

I. Borovok, G. Cohen, Y. Aharonowitz, 2006, Journal of bacteriology.

Glycoside hydrolases as components of putative carbohydrate biosensor proteins in Clostridium thermocellum

E. Bayer, R. Lamed, Y. Shoham, 2011, Journal of Industrial Microbiology & Biotechnology.

Clostridium thermocellum cellulosomal genes are regulated by extracytoplasmic polysaccharides via alternative sigma factors

E. Bayer, R. Lamed, A. Sonenshein, 2010, Proceedings of the National Academy of Sciences.

RRNPP-type quorum-sensing systems regulate solvent formation, sporulation and cell motility in Clostridium saccharoperbutylacetonicum

Pixiang Wang, Jun Feng, Yi Wang, 2020, Biotechnology for Biofuels.

Complexity of the Ruminococcus flavefaciens FD-1 cellulosome reflects an expansion of family-related protein-protein interactions

Raphael Lamed, Edward A. Bayer, Pedro Bule, 2017, Scientific Reports.

Near-Complete Genome Sequence of the Cellulolytic Bacterium Bacteroides (Pseudobacteroides) cellulosolvens ATCC 35603

Sagar M. Utturkar, E. Bayer, R. Lamed, 2015, Genome Announcements.

Standalone cohesin as a molecular shuttle in cellulosome assembly

E. Bayer, R. Lamed, F. Frolow, 2015, FEBS letters.

Genome-wide analysis of acetivibrio cellulolyticus provides a blueprint of an elaborate cellulosome system

Christopher L. Hemme, Jizhong Zhou, B. Henrissat, 2012, BMC Genomics.

Revisiting the Regulation of the Primary Scaffoldin Gene in Clostridium thermocellum

E. Bayer, R. Lamed, Y. Shoham, 2017, Applied and Environmental Microbiology.

Abundance and Diversity of Dockerin-Containing Proteins in the Fiber-Degrading Rumen Bacterium, Ruminococcus flavefaciens FD-1

A. Travis, B. Henrissat, D. Antonopoulos, 2010, PloS one.

Conservation and Divergence in Cellulosome Architecture between Two Strains of Ruminococcus flavefaciens

Raphael Lamed, Edward A. Bayer, Bryan A. White, 2006, Journal of bacteriology.

Discovery and Characterization of Cadherin Domains in Saccharophagus degradans 2-40

R. Lamed, R. Weiner, I. Borovok, 2009, Journal of bacteriology.

Fine-structural variance of family 3 carbohydrate-binding modules as extracellular biomass-sensing components of Clostridium thermocellum anti-σI factors.

E. Bayer, R. Lamed, L. Shimon, 2014, Acta crystallographica. Section D, Biological crystallography.

Characterization of RAP, a quorum sensing activator of Staphylococcus aureus.

Saul Tzipori, Naomi Balaban, Ilya Borovok, 2003, FEMS microbiology letters.

Gene organization in the trxA/B-oriC region of the Streptomyces coelicolor chromosome and comparison with other eubacteria.

I. Borovok, Y. Av‐Gay, G. Cohen, 1998, Gene.

A sequence-based filtering method for ncRNA identification and its application to searching for riboswitch elements

Roded Sharan, Vineet Bafna, Shaojie Zhang, 2006, ISMB.

Mutant Strain AD2 Derived Cellulose Adhesion-Defective thermocellum Wild-Type Strain YS and Draft Genome Sequences for Clostridium

Courtney M. Johnson, Sagar M. Utturkar, E. Bayer, 2012 .

The mycelium-associated Streptomyces reticuli catalase-peroxidase, its gene and regulation by FurS.

D. Ortiz de Orué Lucana, I. Borovok, H. Schrempf, 1999, Microbiology.

Conservation and Divergence in Cellulosome Architecture between Two Strains of Ruminococcus ﬂavefaciens (cid:1)

D. Antonopoulos, B. White, E. Bayer, 2006 .

Discovery and Characterization of Cadherin Domains in Saccharophagus degradans 2-40

R. Lamed, R. Weiner, I. Borovok, 2009, Journal of bacteriology.

Clostridium thermocellum cellulosomal genes are regulated by extracytoplasmic polysaccharides via alternative sigma factors

E. Bayer, R. Lamed, A. Sonenshein, 2010, Proceedings of the National Academy of Sciences.

The unique set of putative membrane-associated anti-sigma factors in Clostridium thermocellum suggests a novel extracellular carbohydrate-sensing mechanism involved in gene regulation.

E. Bayer, R. Lamed, Y. Shoham, 2010, FEMS microbiology letters.

Cellulosome gene cluster analysis for gauging the diversity of the ruminal cellulolytic bacterium Ruminococcus flavefaciens.

Jennifer M. Brulc, B. White, E. Bayer, 2008, FEMS microbiology letters.

Cellulosome gene cluster analysis for gauging the diversity of the ruminal cellulolytic bacterium Ruminococcus£avefaciens

Jennifer M. Brulc, E. Bayer, R. Lamed, 2008 .

Draft Genome Sequences for Clostridium thermocellum Wild-Type Strain YS and Derived Cellulose Adhesion-Defective Mutant Strain AD2

Courtney M. Johnson, Sagar M. Utturkar, E. Bayer, 2012, Journal of bacteriology.

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Natalia N. Ivanova, N. Shapiro, E. Bayer, 2016 .