D. Koirala

发表

Mechanical properties of DNA origami nanoassemblies are determined by Holliday junction mechanophores

H. Sugiyama, H. Mao, Masayuki Endo, 2016, Nucleic acids research.

A conserved RNA structural motif for organizing topology within picornaviral internal ribosome entry sites

Rhiju Das, J. Piccirilli, A. Watkins, 2019, Nature Communications.

A single-molecule platform for investigation of interactions between G-quadruplexes and small-molecule ligands.

S. Balasubramanian, H. Sugiyama, H. Mao, 2011, Nature chemistry.

Interaction of G-quadruplexes in the full-length 3' human telomeric overhang.

H. Mao, Prakash Shrestha, D. Koirala, 2014, Journal of the American Chemical Society.

Single-molecule mechanochemical sensing using DNA origami nanostructures.

Prakash Shrestha, Tomoko Emura, Masayuki Endo, 2014, Angewandte Chemie.

Inside Back Cover: Single‐Molecule Mechanochemical Sensing Using DNA Origami Nanostructures (Angew. Chem. Int. Ed. 31/2014)

H. Sugiyama, S. Mandal, H. Mao, 2014 .

Innenrücktitelbild: Single-Molecule Mechanochemical Sensing Using DNA Origami Nanostructures (Angew. Chem. 31/2014)

H. Sugiyama, S. Mandal, H. Mao, 2014 .

Dynamic bulge nucleotides in the KSHV PAN ENE triple helix provide a unique binding platform for small molecule ligands.

A. Wlodawer, B. Shapiro, M. Swain, 2021, Nucleic Acids Research.

Study of Biomolecular Recognition Using Time-Resolved Optical Spectroscopy

H. Mao, D. Koirala, M. Sanderson, 2012 .

Controlled particle collision leads to direct observation of docking and fusion of lipid droplets in an optical trap.

H. Mao, E. Kooijman, D. Koirala, 2014, Langmuir : the ACS journal of surfaces and colloids.

Variation in spirometry parameters in children with and without recurrent respiratory problems

D. Koirala, E. Gauchan, Ganesh Bk, 2020 .

Mechanical affinity as a new metrics to evaluate binding events

H. Mao, D. Koirala, Philip M. Yangyuoru, 2013 .

Mechanochemistry, Transition Dynamics and Ligand-Induced Stabilization of Human Telomeric G-Quadruplexes at Single-Molecule Level

D. Koirala, 2014 .

Intramolecular Folding in Human ILPR Fragment with Three C-Rich Repeats

H. Mao, D. Koirala, Soma Dhakal, 2012, PloS one.

Intramolecular folding in three tandem guanine repeats of human telomeric DNA.

H. Sugiyama, H. Mao, D. Koirala, 2012, Chemical communications.

Divalent cations and molecular crowding buffers stabilize G-triplex at physiologically relevant temperatures

Jibin Abraham Punnoose, H. Mao, Hong-xin Jiang, 2015, Scientific Reports.

Long-loop G-quadruplexes are misfolded population minorities with fast transition kinetics in human telomeric sequences.

Hiroshi Sugiyama, Deepak Koirala, H. Sugiyama, 2013, Journal of the American Chemical Society.

Structural and mechanical properties of individual human telomeric G-quadruplexes in molecularly crowded solutions

H. Mao, D. Koirala, Yunxi Cui, 2013, Nucleic acids research.

Affinity maturation of a portable Fab–RNA module for chaperone-assisted RNA crystallography

S. Benner, J. Piccirilli, Saurja DasGupta, 2018, Nucleic acids research.

Mechanochemical Properties of Individual Human Telomeric RNA (TERRA) G‐Quadruplexes

S. Balasubramanian, Amy Y Q Zhang, H. Mao, 2013, Chembiochem : a European journal of chemical biology.

G-quadruplex and i-motif are mutually exclusive in ILPR double-stranded DNA.

H. Mao, D. Koirala, Yunxi Cui, 2012, Biophysical journal.

Molecular population dynamics of DNA structures in a bcl-2 promoter sequence is regulated by small molecules and the transcription factor hnRNP LL

Hyun-Jin Kang, H. Mao, L. Hurley, 2014, Nucleic acids research.

Quantification of topological coupling between DNA superhelicity and G-quadruplex formation.

H. Mao, D. Koirala, Zhongbo Yu, 2014, Journal of the American Chemical Society.

Click chemistry assisted single-molecule fingerprinting reveals a 3D biomolecular folding funnel.

H. Mao, D. Koirala, Yunxi Cui, 2012, Journal of the American Chemical Society.

Coexistence of an ILPR i-motif and a partially folded structure with comparable mechanical stability revealed at the single-molecule level.

S. Basu, H. Mao, D. Koirala, 2010, Journal of the American Chemical Society.

Profile of children admitted with seizures in a tertiary care hospital of Western Nepal

B. Sathian, D. Koirala, Sudhir Adhikari, 2013, BMC Pediatrics.

Reasons for Early or Late Initiation of Complementary Feeding: A Study in Pokhara

B. Sathian, D. Koirala, K. Malla, 2015 .

Single-molecule measurements of the binding between small molecules and DNA aptamers.

H. Mao, D. Koirala, Soma Dhakal, 2012, Analytical chemistry.

The SARS-CoV-2 Programmed −1 Ribosomal Frameshifting Element Crystal Structure Solved to 2.09 Å Using Chaperone-Assisted RNA Crystallography

J. Piccirilli, D. Koirala, A. Lewicka, 2021, ACS chemical biology.

Structural basis for substrate binding and catalysis by a self-alkylating ribozyme

J. Piccirilli, Saurja DasGupta, D. Koirala, 2022, Nature Chemical Biology.

Crystal structure of a highly conserved enteroviral 5′ cloverleaf RNA replication element

H. Banna, D. Koirala, M. Ojha, 2023, Nature Communications.

Crystalizing Structured RNAs Using a Surface‐Entropy‐Reduced Fab as a Crystallization Chaperone

J. Piccirilli, D. Koirala, C. Roman, 2020, The FASEB Journal.

Structural basis for activation of fluorogenic dyes by an RNA aptamer lacking a G-quadruplex motif

J. Piccirilli, M. Bruchez, A. Waggoner, 2018, Nature Communications.

Structural basis for activation of fluorogenic dyes by an RNA aptamer lacking a G-quadruplex motif

J. Piccirilli, M. Bruchez, A. Waggoner, 2018, Nature Communications.

Mechanical properties of DNA origami nanoassemblies are determined by Holliday junction mechanophores

H. Sugiyama, H. Mao, Masayuki Endo, 2016, Nucleic acids research.

A Study of Clinical Features, Management and Outcome of Organophosphate and Carbamate Poisoning in Children

D. Koirala, T. Malla, Ks Rao, 2013 .

Advances in chaperone-assisted RNA crystallography using synthetic antibodies

H. Banna, D. Koirala, Nabanita Das, 2023, BBA advances.

A molecular tuning fork in single-molecule mechanochemical sensing.

S. Mandal, H. Mao, D. Koirala, 2015, Angewandte Chemie.

Yoctoliter thermometry for single-molecule investigations: a generic bead-on-a-tip temperature-control module.

Jibin Abraham Punnoose, H. Mao, Prakash Shrestha, 2014, Angewandte Chemie.

Synthetic antibody binding to a pre-organized IRES RNA domain of hepatitis C virus inhibits translation.

J. Piccirilli, Hao Huang, D. Koirala, 2019, ACS chemical biology.

Synthetic antibody binding to a pre-organized RNA domain of hepatitis C virus internal ribosome entry site inhibits translation

Hao Huang, D. Koirala, Y. Koldobskaya, 2021 .

A single-molecule platform for investigation of interactions between G-quadruplexes and small-molecule ligands.

S. Balasubramanian, H. Sugiyama, H. Mao, 2011, Nature chemistry.