I. M. Rouzine

发表

Evolution of Human Immunodeficiency Virus Under Selection and Weak Recombination

J. Coffin, I. M. Rouzine, 2005, Genetics.

Transition between Stochastic Evolution and Deterministic Evolution in the Presence of Selection: General Theory and Application to Virology

A. Rodrigo, J. Coffin, I. M. Rouzine, 2001, Microbiology and Molecular Biology Reviews.

The solitary wave of asexual evolution

J. Coffin, J. Wakeley, I. M. Rouzine, 2003, Proceedings of the National Academy of Sciences of the United States of America.

The traveling-wave approach to asexual evolution: Muller's ratchet and speed of adaptation.

C. Wilke, É. Brunet, I. M. Rouzine, 2007, Theoretical population biology.

Linkage disequilibrium test implies a large effective population number for HIV in vivo.

J. Coffin, I. M. Rouzine, I M Rouzine, 1999, Proceedings of the National Academy of Sciences of the United States of America.

Distribution of fixed beneficial mutations and the rate of adaptation in asexual populations

Benjamin H. Good, Michael M. Desai, B. Good, 2012, Proceedings of the National Academy of Sciences.

The quantitative theory of within-host viral evolution

Igor M. Rouzine, Leor S. Weinberger, L. Weinberger, 2013 .

A Hardwired HIV Latency Program

Igor M. Rouzine, Leor S. Weinberger, Anand Pai, 2015, Cell.

Multi-site adaptation in the presence of infrequent recombination.

Igor M Rouzine, J. Coffin, I. M. Rouzine, 2010, Theoretical population biology.

Search for the Mechanism of Genetic Variation in the pro Gene of Human Immunodeficiency Virus

J. Coffin, I. M. Rouzine, J. M. Coffin, 1999, Journal of Virology.

Two types of cytotoxic lymphocyte regulation explain kinetics of immune response to human immunodeficiency virus.

I. M. Rouzine, I M Rouzine, R A Sergeev, 2006, Proceedings of the National Academy of Sciences of the United States of America.

An Evolutionary Model of Progression to AIDS

I. M. Rouzine, 2020, Microorganisms.

RNA Recombination Enhances Adaptability and Is Required for Virus Spread and Virulence.

R. Andino, L. Brodsky, S. Bianco, 2016, Cell host & microbe.

Regulation of Primary Cytotoxic Response by Antigen-Presenting Cells

R. Ahmed, I. M. Rouzine, K. Murali‐Krishna, 2003 .

Long-range Hill-Robertson effect in adapting populations with recombination and standing variation

I. M. Rouzine, 2022, bioRxiv.

Conflicting Selection Pressures Will Constrain Viral Escape from Interfering Particles: Principles for Designing Resistance-Proof Antivirals

Ariel D. Weinberger, Luke I. Rast, Igor M. Rouzine, 2016, PLoS Comput. Biol..

Design Requirements for Interfering Particles To Maintain Coadaptive Stability with HIV-1

Igor M. Rouzine, Leor S. Weinberger, L. Weinberger, 2012, Journal of Virology.

The evolutionary origin of the universal distribution of mutation fitness effect

I. M. Rouzine, A. Barlukova, 2019, bioRxiv.

Rapid Adaptive Amplification of Preexisting Variation in an RNA Virus

C. Wilke, I. M. Rouzine, I. Novella, 2008, Journal of Virology.

Evolutionary footprint of epistasis

Gabriele Pedruzzi, Ayuna Barlukova, Igor M Rouzine, 2018, PLoS Comput. Biol..

Fifteen Years Later: Hard and Soft Selection Sweeps Confirm a Large Population Number for HIV In Vivo

Igor M. Rouzine, Leor S. Weinberger, John M. Coffin, 2014, PLoS genetics.

A role for CD4 helper cells in HIV control and progression

I. M. Rouzine, 2021, bioRxiv.

The Route of HIV Escape from Immune Response Targeting Multiple Sites Is Determined by the Cost-Benefit Tradeoff of Escape Mutations

Igor M. Rouzine, Rinat A. Sergeev, Rebecca Batorsky, 2014, PLoS Comput. Biol..

Estimate of effective recombination rate and average selection coefficient for HIV in chronic infection

Rebecca Batorsky, Igor M Rouzine, J. Coffin, 2011, Proceedings of the National Academy of Sciences.

Interplay Between Experiment and Theory in Development of a Working Model for HIV-1 Population Dynamics

J. Coffin, I. M. Rouzine, 1999 .

An evolution-based high-fidelity method of epistasis measurement: Theory and application to influenza

Igor M. Rouzine, Gabriele Pedruzzi, I. M. Rouzine, 2019, bioRxiv.

An Evolutionary Role for HIV Latency in Enhancing Viral Transmission

Ariel D. Weinberger, Igor M. Rouzine, Leor S. Weinberger, 2015, Cell.

Epistasis detectably alters correlations between genomic sites in a narrow parameter window

I. M. Rouzine, Gabriele Pedruzzi, 2019, bioRxiv.

Antigenic evolution of viruses in host populations

Ganna Rozhnova, Igor M Rouzine, G. Rozhnova, 2018, PLoS pathogens.

The Stochastic Edge in Adaptive Evolution

Claus O Wilke, Igor M Rouzine, Eric Brunet, 2007, Genetics.

Highly fit ancestors of a partly sexual haploid population.

J. Coffin, I. M. Rouzine, John M. Coffin, 2007, Theoretical population biology.

Increasing sequence correlation limits the efficiency of recombination in a multisite evolution model.

J. Coffin, I. M. Rouzine, S Gheorghiu-Svirschevski, 2007, Molecular biology and evolution.

Stochastic variability in HIV affects viral eradication

L. Weinberger, B. Razooky, I. M. Rouzine, 2014, Proceedings of the National Academy of Sciences.

Variability in viral pathogenesis: modeling the dynamic of acute and persistent infections

R. Andino, I. M. Rouzine, Peter V. Lidsky, 2017, Current Opinion in Virology.

Experimental and mathematical insights on the interactions between poliovirus and a defective interfering genome

R. Andino, S. Bianco, Zachary J. Whitfield, 2021, bioRxiv.

Experimental and mathematical insights on the competition between poliovirus and a defective interfering genome

R. Andino, S. Bianco, I. M. Rouzine, 2019, bioRxiv.

Model with two types of CTL regulation and experiments on CTL dynamics.

I. M. Rouzine, I M Rouzine, R A Sergeev, 2010, Journal of theoretical biology.

Reply to “Coadaptive Stability of Interfering Particles with HIV-1 When There Is an Evolutionary Conflict”

Igor M. Rouzine, Leor S. Weinberger, L. Weinberger, 2013, Journal of Virology.

Interpreting the effect of vaccination on steady state infection in animals challenged with Simian immunodeficiency virus.

J. Coffin, I. M. Rouzine, I M Rouzine, 2010, Journal of theoretical biology.

Evolutionary implications of SARS-CoV-2 vaccination for the future design of vaccination strategies

G. Rozhnova, I. M. Rouzine, 2023, Communications medicine.

Generals die in friendly fire, or modeling immune response to HIV

R. Ahmed, I. M. Rouzine, K. Murali-Krishna, 2005 .

Link between immune response and parasite synchronization in malaria

Igor M Rouzine, F. McKenzie, I. M. Rouzine, 2003, Proceedings of the National Academy of Sciences of the United States of America.

Long-range linkage effects in adapting sexual populations

I. M. Rouzine, 2023, Scientific reports.

The evolutionary origin of the universal distribution of fitness effect

I. M. Rouzine, A. Barlukova, Gabriele Pedruzzi, 2022 .

The Stochastic Edge in Adaptive Evolution

C. Wilke, I. M. Rouzine, E. Brunet, 2007, Genetics.

Theory An Evolutionary Role for HIV Latency in Enhancing Viral Transmission Graphical Abstract Highlights

Ariel D. Weinberger, L. Weinberger, I. M. Rouzine, 2015 .