A. Kistler

C. Langefeld, K. Skorecki, J. Divers, 2018, Nephrology, dialysis, transplantation : official publication of the European Dialysis and Transplant Association - European Renal Association.

Genomic Characterization of a Novel Henipavirus , Angavokely virus , from 1 fruit bats in Madagascar . 2 3 Running Title Novel Henipavirus , Angavokely virus , discovered in Madagascar fruit bats 4 5

J. Derisi, J. Héraud, C. Tato, 2022 .

Upper airway gene expression shows a more robust adaptive immune response to SARS-CoV-2 in children

N. Neff, J. Derisi, A. Pisco, 2022, Nature Communications.

Quantitative reverse transcription PCR assay to detect a genetic marker of pyrethroid resistance in Culex mosquitoes

C. M. Hoover, A. Kistler, H. Retallack, 2022, PloS one.

Deconvoluting complex correlates of COVID-19 severity with a multi-omic pandemic tracking strategy

Omar E. Cornejo, Christopher M. DeBoever, Manuel A. Rivas, 2022, Nature Communications.

Anti-nucleocapsid antibody levels and pulmonary comorbid conditions are linked to post–COVID-19 syndrome

H. Din, K. Nadeau, H. Maecker, 2022, JCI insight.

Alternatively spliced exons of the beta tropomyosin gene exhibit different affinities for F-actin and effects with nonmuscle caldesmon.

D. Helfman, M. Pittenger, A. Kistler, 1995, Journal of cell science.

Achalasia and Viral Infection: New Insights from Veterinary Medicine

J. Derisi, D. Ganem, A. Kistler, 2010, Science Translational Medicine.

Discovery and Genomic Characterization of a Novel Henipavirus, Angavokely virus, from fruit bats in Madagascar

J. Derisi, J. Héraud, C. Tato, 2022, bioRxiv.

mNGS Investigation of Single Ixodes pacificus Ticks Reveals Diverse Microbes, Viruses, and a Novel mRNA-like Endogenous Viral Elements

K. Pollard, Seemay Chou, A. Kistler, 2022, bioRxiv.

Upper airway gene expression differentiates COVID-19 from other acute respiratory illnesses and reveals suppression of innate immune responses by SARS-CoV-2

N. Neff, J. Derisi, A. Pisco, 2020, medRxiv.

Pan-Viral Screening of Respiratory Tract Infections in Adults With and Without Asthma Reveals Unexpected Human Coronavirus and Human Rhinovirus Diversity

J. Derisi, H. Boushey, Silvi Rouskin, 2007, The Journal of infectious diseases.

Biogenesis of yeast a-factor involves prenylation, methylation and a novel export mechanism

P. Chen, S. Michaelis, A. Kistler, 1992, Antonie van Leeuwenhoek.

Identification of a Polymorphism in the N Gene of SARS-CoV-2 That Adversely Impacts Detection by Reverse Transcription-PCR

James T. Webber, Sidney M. Bell, N. Neff, 2020, Journal of Clinical Microbiology.

Community Transmission of Severe Acute Respiratory Syndrome Coronavirus 2 Disproportionately Affects the Latinx Population During Shelter-in-Place in San Francisco

E. Crawford, D. Havlir, J. Batson, 2020, Clinical Infectious Diseases.

SARS-CoV-2 Community Transmission disproportionately affects Latinx population during Shelter-in-Place in San Francisco

E. Crawford, J. Derisi, M. Petersen, 2020, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

Identification, Characterization, and In Vitro Culture of Highly Divergent Arenaviruses from Boa Constrictors and Annulated Tree Boas: Candidate Etiological Agents for Snake Inclusion Body Disease

Joseph L. DeRisi, Amy L. Kistler, J. Derisi, 2012, mBio.

Experimental induction of proventricular dilatation disease in cockatiels (Nymphicus hollandicus) inoculated with brain homogenates containing avian bornavirus 4

J. Derisi, D. Ganem, A. Lublin, 2009, Virology Journal.

Recovery of divergent avian bornaviruses from cases of proventricular dilatation disease: Identification of a candidate etiologic agent

J. Derisi, C. Wen, P. Skewes-Cox, 2008, Virology Journal.

Analysis of Naturally Occurring Avian Bornavirus Infection and Transmission during an Outbreak of Proventricular Dilatation Disease among Captive Psittacine Birds

J. Derisi, D. Ganem, A. Greninger, 2009, Journal of Virology.

Avian Bornavirus is Present in Many Tissues of Psittacine Birds with Histopathologic Evidence of Proventricular Dilatation Disease

J. Derisi, D. Ganem, D. Pearl, 2010, Journal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc.

Upper airway gene expression reveals suppressed immune responses to SARS-CoV-2 compared with other respiratory viruses

N. Neff, J. Derisi, A. Pisco, 2020, Nature Communications.

Identification of a previously undescribed divergent virus from the Flaviviridae family in an outbreak of equine serum hepatitis

P. Skewes-Cox, W. Zhong, D. Ganem, 2013, Proceedings of the National Academy of Sciences.

A 2-Gene Host Signature for Improved Accuracy of COVID-19 Diagnosis Agnostic to Viral Variants

N. Neff, J. Derisi, A. Pisco, 2022, medRxiv.

Deletion of MUD2, the yeast homolog of U2AF65, can bypass the requirement for sub2, an essential spliceosomal ATPase.

C. Guthrie, A. Kistler, Amy Kistler, 2001, Genes & development.

Saccharomyces cerevisiae a-Factor Mutants Reveal Residues Critical for Processing, Activity, and Export

S. Michaelis, A. Kistler, Franklin J. Nouvet, 2006, Eukaryotic Cell.

Estimation of Secondary Household Attack Rates for Emergent Spike L452R Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Variants Detected by Genomic Surveillance at a Community-Based Testing Site in San Francisco

J. Derisi, M. Petersen, D. Havlir, 2021, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

Estimation of secondary household attack rates for emergent SARS-CoV-2 variants detected by genomic surveillance at a community-based testing site in San Francisco

J. Derisi, M. Petersen, D. Havlir, 2021, medRxiv.

Rapid deployment of SARS-CoV-2 testing: The CLIAHUB

James T. Webber, Jeffrey A. Hussmann, John R. Haliburton, 2020, PLoS pathogens.

Full Genome Nobecovirus Sequences From Malagasy Fruit Bats Define a Unique Evolutionary History for This Coronavirus Clade

J. Derisi, J. Héraud, C. Tato, 2021, bioRxiv.

Genomic Epidemiology and Transmission Dynamics of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) in Congregate Healthcare Facilities in Santa Clara County, California

James T. Webber, Mark A. Zhang, N. Neff, 2021, Clinical Infectious Diseases.

Single mosquito metatranscriptomics recovers mosquito species, blood meal sources, and microbial cargo, including viral dark matter

Hanna Retallack, Gytis Dudas, Joshua Batson, 2020, bioRxiv.

Title Discovery and Genomic Characterization of a Novel Henipavirus , Angavokely virus , from 1 fruit bats in Madagascar . 2 3 Running Title Novel Henipavirus , AngV , found in Madagascar fruit bat 4 5

J. Derisi, J. Héraud, C. Tato, 2022 .

Using genomic epidemiology of SARS-CoV-2 to support contact tracing and public health surveillance in rural Humboldt County, California

N. Neff, J. Derisi, J. Batson, 2022, BMC Public Health.

E-Predict: a computational strategy for species identification based on observed DNA microarray hybridization patterns

Joseph L DeRisi, David Wang, Charles Y Chiu, 2005, Genome Biology.

An exploration of ambigrammatic sequences in narnaviruses

J. Derisi, G. Huber, D. Yllanes, 2019, Scientific Reports.

Using genomic epidemiology of SARS-CoV-2 to support contact tracing and public health surveillance in rural Humboldt County, California

N. Neff, J. Derisi, J. Batson, 2021, BMC Public Health.

Identification of a polymorphism in the N gene of SARS-CoV-2 that adversely impacts detection by a widely-used RT-PCR assay

James T. Webber, Sidney M. Bell, N. Neff, 2020, bioRxiv.

SARS-CoV-2 Community Transmission During Shelter-in-Place in San Francisco

E. Crawford, J. Derisi, M. Petersen, 2020, medRxiv.

SARS-CoV-2 Infection of Rhesus Macaques Treated Early with Human COVID-19 Convalescent Plasma

J. Derisi, L. Fritts, M. Busch, 2021, Microbiology spectrum.

Complete Genome Sequence of a Novel Coronavirus (SARS-CoV-2) Isolate from Bangladesh

J. Derisi, M. Hasanuzzaman, J. Batson, 2020, Microbiology Resource Announcements.

Clinical features, diagnostics, and outcomes of patients presenting with acute respiratory illness: a comparison of patients with and without COVID-19

John R. Haliburton, N. Neff, J. Derisi, 2020, medRxiv.

The Cyclic GMP-Dependent Protein Kinase EGL-4 Regulates Olfactory Adaptation in C. elegans

Cori Bargmann, N. L’Etoile, C. Coburn, 2002, Neuron.

Quantitative reverse transcription PCR assay to detect pyrethroid resistance in Culex mosquitoes

C. M. Hoover, A. Kistler, H. Retallack, 2021, bioRxiv.

A Toolkit for Rapid Modular Construction of Biological Circuits in Mammalian Cells.

Patrick Harrigan, Galen Dods, Hana El-Samad, 2019, ACS synthetic biology.

Impaired antibacterial immune signaling and changes in the lung microbiome precede secondary bacterial pneumonia in COVID-19

N. Neff, J. Derisi, S. Darmanis, 2021, medRxiv.

Rapid DNA mapping by fluorescent single molecule detection

Pui-Yan Kwok, Ting-Fung Chan, Paul R. Selvin, 2006, Nucleic acids research.

Gradient perception by neutrophil leucocytes, continued.

D. Lauffenburger, R. Tranquillo, S. Zigmond, 1987, Journal of cell science.

COMMENTARY Gradient perception by neutrophil leucocytes, continued

D. Lauffenburger, R. Tranquillo, S. Zigmond, 1987 .

Upper airway gene expression reveals a more robust innate and adaptive immune response to SARS-CoV-2 in children compared with older adults

N. Neff, J. Derisi, A. Pisco, 2021, medRxiv.

Impaired immune signaling and changes in the lung microbiome precede secondary bacterial pneumonia in COVID-19

N. Neff, J. Derisi, S. Darmanis, 2021, Research square.

A Toolkit for Rapid Modular Construction of Biological Circuits in Mammalian Cells

Hana El-Samad, Patrick Harrigan, Andrew H. Ng, 2018, bioRxiv.

Structure of Collagen XXIV and its Expression in Cornea and Retina

A. Kistler, M. Koch, M. Gordon, 2002 .

Achalasia and Viral Infection: New Insights from Veterinary Medicine

J. Derisi, D. Ganem, A. Kistler, 2010, Science Translational Medicine.

Experimental induction of proventricular dilatation disease in cockatiels (Nymphicus hollandicus) inoculated with brain homogenates containing avian bornavirus 4

J. Derisi, D. Ganem, A. Lublin, 2009, Virology Journal.

Identification, Characterization, and In Vitro Culture of Highly Divergent Arenaviruses from Boa Constrictors and Annulated Tree Boas: Candidate Etiological Agents for Snake Inclusion Body Disease

M. Stenglein, A. Kistler, D. Reavill, 2012, mBio.

Metatranscriptomic investigation of single Ixodes pacificus ticks reveals diverse microbes, viruses, and novel mRNA-like endogenous viral elements

Seemay Chou, A. Kistler, Beth M. Hayes, 2024, mSystems.

Discovery and Genomic Characterization of a Novel Henipavirus, Angavokely Virus, from Fruit Bats in Madagascar

J. Derisi, J. Héraud, C. Tato, 2022, Journal of virology.