D. Hoffman

发表

An examination of coaxial stacking of helical stems in a pseudoknot motif: the gene 32 messenger RNA pseudoknot of bacteriophage T2.

Z. Du, M. Hansen, J. A. Holland, 1999, RNA.

An NMR and mutational study of the pseudoknot within the gene 32 mRNA of bacteriophage T2: insights into a family of structurally related RNA pseudoknots.

Z. Du, D. Hoffman, 1997, Nucleic acids research.

NMR analysis of the trans-activation response (TAR) RNA element of equine infectious anemia virus.

S. White, D. Hoffman, 1995, Nucleic acids research.

Position-Specific Carbon Stable Isotope Ratios by Proton NMR Spectroscopy.

D. Hoffman, Cornelia Rasmussen, 2019, Analytical chemistry.

Structural characterization of a rigidified threading bisintercalator.

S. Sorey, D. Hoffman, B. Iverson, 2007, Journal of the American Chemical Society.

Structure of small protein B: the protein component of the tmRNA–SmpB system for ribosome rescue

G. Dong, J. Nowakowski, D. Hoffman, 2002, The EMBO journal.

The KSHV ORF20 Protein Interacts With The Viral Processivity Factor ORF59 And Promote Viral Reactivation

M. Muller, D. Hoffman, W. Rodriguez, 2020, bioRxiv.

Structural Studies on Prokaryotic Ribosomal Proteins

B. Golden, V. Ramakrishnan, S. White, 1993 .

Structural features of the trans-activation response RNA element of equine infectious anemia virus.

M. Garcia-Blanco, S. White, R. Colvin, 1993, Biochemistry.

Structural features of an RNA containing the CUGGGA loop of the human immunodeficiency virus type 1 trans-activation response element.

M. Garcia-Blanco, S. White, R. Colvin, 1993, Biochemistry.

The rates of fast reactions of carbon dioxide and bicarbonate in human erythrocytes measured by carbon-13 NMR.

D. Hoffman, R. Henkens, 1987, Biochemical and biophysical research communications.

Intramolecular distribution of 13C/12C isotopes in amino acids of diverse origins

D. Hoffman, Cornelia Rasmussen, 2020, Amino Acids.

The crystal structure of spermidine/spermine N1-acetyltransferase in complex with spermine provides insights into substrate binding and catalysis.

E. Montemayor, D. Hoffman, 2008, Biochemistry.

Domain C of human poly(ADP-ribose) polymerase-1 is important for enzyme activity and contains a novel zinc-ribbon motif.

Hung‐wen Liu, D. Hoffman, Z. Tao, 2008, Biochemistry.

Preparation of carbon-13 labeled ribonucleotides using acetate as an isotope source.

J. A. Holland, D. Hoffman, 1995, Nucleic acids research.

The missing linker: a dimerization motif located within polyketide synthase modules.

Borries Demeler, D. Hoffman, A. Keatinge-Clay, 2013, ACS chemical biology.

A pseudocatenane structure formed between DNA and A cyclic bisintercalator.

D. Hoffman, B. Iverson, Yongjun Chu, 2009, Journal of the American Chemical Society.

NMR structural analysis of a modular threading tetraintercalator bound to DNA.

Jeeyeon Lee, S. Sorey, D. Hoffman, 2004, Journal of the American Chemical Society.

Changing DNA grooves--a 1,4,5,8-naphthalene tetracarboxylic diimide bis-intercalator with the linker (beta-Ala)(3)-Lys in the minor groove.

S. Sorey, D. Hoffman, B. Iverson, 2002, Journal of the American Chemical Society.

Peptide bis-intercalator binds DNA via threading mode with sequence specific contacts in the major groove.

S. Sorey, D. Hoffman, B. Iverson, 2001, Chemistry & biology.

Structural features and stability of an RNA triple helix in solution.

J. A. Holland, D. Hoffman, 1996, Nucleic acids research.

Solution structure of a conserved domain of antizyme: a protein regulator of polyamines.

D. Hoffman, M. Hackert, D. Carroll, 2005, Biochemistry.

Unusual structure, evolutionary conservation of non-coding sequences and numerous pseudogenes characterize the human H3.3 histone multigene family.

L. Kedes, D. Wells, D. Hoffman, 1987, Nucleic acids research.

Comparative studies of frameshifting and nonframeshifting RNA pseudoknots: a mutational and NMR investigation of pseudoknots derived from the bacteriophage T2 gene 32 mRNA and the retroviral gag-pro frameshift site.

J. F. Atkins, R. Gesteland, Z. Du, 2002, RNA.

Structure and dynamics of translation initiation factor aIF‐1A from the archaeon Methanococcus jannaschii determined by NMR spectroscopy

W. Li, D. Hoffman, 2001, Protein science : a publication of the Protein Society.

Solution structure of a luteoviral P1-P2 frameshifting mRNA pseudoknot.

Alexander Rich, A. Rich, M. Hennig, 2002, Journal of molecular biology.

Base-pairings within the RNA pseudoknot associated with the simian retrovirus-1 gag-pro frameshift site.

D. Giedroc, Z. Du, M. Hansen, 1997, Journal of molecular biology.

A Conserved Structural Motif at the N Terminus of Bacterial Translation Initiation Factor IF2*

B. S. Laursen, K. Mortensen, H. U. Sperling-Petersen, 2003, The Journal of Biological Chemistry.

The N‐terminal domain (IF2N) of bacterial translation initiation factor IF2 is connected to the conserved C‐terminal domains by a flexible linker

B. S. Laursen, K. Mortensen, H. U. Sperling-Petersen, 2004, Protein science : a publication of the Protein Society.

Ribosomal protein L9: a structure determination by the combined use of X-ray crystallography and NMR spectroscopy.

V. Ramakrishnan, S. White, C. Davies, 1996, Journal of molecular biology.

The Structure of Eukaryotic Translation Initiation Factor-4E from Wheat Reveals a Novel Disulfide Bond1[OA]

K. Browning, A. Monzingo, J. Robertus, 2007, Plant Physiology.

Non-nearest neighbor effects on the thermodynamics of unfolding of a model mRNA pseudoknot.

D. Giedroc, C. A. Theimer, H. Krisch, 1998, Journal of molecular biology.

Structure of the autoregulatory pseudoknot within the gene 32 messenger RNA of bacteriophages T2 and T6: a model for a possible family of structurally related RNA pseudoknots.

D. Giedroc, Z. Du, D. Hoffman, 1996, Biochemistry.

Ribosomal protein S17: characterization of the three-dimensional structure by 1H and 15N NMR.

B. Golden, V. Ramakrishnan, S. White, 1993, Biochemistry.

The crystal structure of the N-terminal region of the alpha subunit of translation initiation factor 2 (eIF2alpha) from Saccharomyces cerevisiae provides a view of the loop containing serine 51, the target of the eIF2alpha-specific kinases.

D. Hoffman, S. Dhaliwal, 2003, Journal of molecular biology.

Crystallization and preliminary structural analysis of the replication terminator protein of Bacillus subtilis.

D. Bussiere, D. Bastia, S. White, 1992, The Journal of biological chemistry.

RNA-binding domain of the A protein component of the U1 small nuclear ribonucleoprotein analyzed by NMR spectroscopy is structurally similar to ribosomal proteins.

B. Golden, J. Keene, S. White, 1991, Proceedings of the National Academy of Sciences of the United States of America.

Bruno protein contains an expanded RNA recognition motif.

P. Macdonald, D. Hoffman, Brad S Reveal, 2009, Biochemistry.

An investigation of the dynamics of ribosomal protein L9 using heteronuclear NMR relaxation measurements.

D. Hoffman, J. Lillemoen, 1998, Journal of molecular biology.

SmpB: a protein that binds to double-stranded segments in tmRNA and tRNA.

C. Zwieb, J. Wower, I. Wower, 2002, Biochemistry.

Structure-Function Analysis of Heterodimer Formation, Oligomerization, and Receptor Binding of the Staphylococcus aureus Bi-component Toxin LukGH*

D. Logan, Harald Rouha, D. Hoffman, 2014, The Journal of Biological Chemistry.

NMR Structure of the C-terminal domain of a tyrosyl-tRNA synthetase that functions in group I intron splicing.

A. Lambowitz, N. Chari, D. Hoffman, 2011, Biochemistry.

NMR structure of an archaeal homologue of ribonuclease P protein Rpp29.

D. Sidote, D. Hoffman, 2003, Biochemistry.

The stability and dynamics of ribosomal protein L9: investigations of a molecular strut by amide proton exchange and circular dichroism.

D. Hoffman, C. Cameron, J. Lillemoen, 1997, Journal of molecular biology.

The hydratase activity of malonate semialdehyde decarboxylase: mechanistic and evolutionary implications.

D. Hoffman, C. P. Whitman, Héctor Serrano, 2004, Journal of the American Chemical Society.

Structural and kinetic characterization of two 4-oxalocrotonate tautomerases in Methylibium petroleiphilum strain PM1.

D. Hoffman, C. Terrell, C. P. Whitman, 2013, Archives of biochemistry and biophysics.

The DNA-binding domain of the MotA transcription factor from bacteriophage T4 shows structural similarity to the TATA-binding protein.

S. White, D. Hoffman, M. Finnin, 1994, Proceedings of the National Academy of Sciences of the United States of America.

Novel Nuclear Magnetic Resonance Method for Position-Specific Carbon Isotope Analysis of Organic Molecules with Significant Impurities.

D. Hoffman, Cornelia Rasmussen, 2022, Analytical chemistry.

Absolute Carbon Stable Isotope Ratio in the Vienna Peedee Belemnite Isotope Reference Determined by 1H NMR Spectroscopy.

D. Hoffman, Cornelia Rasmussen, 2022, Analytical Chemistry.

Structure of the beta subunit of translation initiation factor 2 from the archaeon Methanococcus jannaschii: a representative of the eIF2beta/eIF5 family of proteins.

D. Hoffman, Seongeun Cho, 2002, Biochemistry.

Thermodynamics of folding of the RNA pseudoknot of the T4 gene 32 autoregulatory messenger RNA.

D. Giedroc, K. Kaluarachchi, Z. Du, 1996, Biochemistry.

Resolution of the 1H-1H NOE spectrum of RNA into three dimensions using 15N-1H two-bond couplings

D. Hoffman, 2000, Journal of Biomolecular NMR.

RIBOSOMAL PROTEIN L9

V. Ramakrishnan, S. White, C. Davies, 1997 .

Crystal structure of prokaryotic ribosomal protein L9: a bi‐lobed RNA‐binding protein.

V. Ramakrishnan, S. White, C. Davies, 1994, The EMBO journal.

Crystal structure of archaeal ribonuclease P protein aRpp29 from Archaeoglobus fulgidus.

D. Sidote, D. Hoffman, J. Heideker, 2004, Biochemistry.