Michalis Hadjithomas

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Minimum Information about a Biosynthetic Gene cluster.

Carla S. Jones, M. Smanski, Jan Claesen, 2015, Nature chemical biology.

1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life

Natalia N. Ivanova, Jan P. Meier-Kolthoff, A. Visel, 2017, Nature Biotechnology.

Supporting community annotation and user collaboration in the integrated microbial genomes (IMG) system

Natalia N. Ivanova, N. Kyrpides, V. Markowitz, 2016, BMC Genomics.

IMG-ABC: A Knowledge Base To Fuel Discovery of Biosynthetic Gene Clusters and Novel Secondary Metabolites

Victor M. Markowitz, Ken Chu, Krishna Palaniappan, 2015, mBio.

Structure of the germline genome of Tetrahymena thermophila and relationship to the massively rearranged somatic genome

Vivek Krishnakumar, Michalis Hadjithomas, Cédric Feschotte, 2016, eLife.

Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection

Georgios A. Pavlopoulos, Natalia N. Ivanova, Koon Hoong Teh, 2018, Nature Biotechnology.

Integration of machine learning and pan-genomics expands the biosynthetic landscape of RiPP natural products

Alexander M. Kloosterman, M. Fischbach, G. V. van Wezel, 2020, bioRxiv.

Lawrence Berkeley National Laboratory Recent Work Title Supporting community annotation and user collaboration in the integrated microbial genomes ( IMG ) system Permalink

Natalia N. Ivanova, N. Kyrpides, V. Markowitz, 2016 .

An integrated workflow for phenazine-modifying enzyme characterization

S. Deutsch, Ernst Oberortner, J. Dangl, 2018, Journal of Industrial Microbiology & Biotechnology.

Complete genome sequence of Jiangella gansuensis strain YIM 002T (DSM 44835T), the type species of the genus Jiangella and source of new antibiotic compounds

Natalia N. Ivanova, N. Kyrpides, H. Klenk, 2017, Standards in genomic sciences.

Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection

Vincent Lombard, Bernard Henrissat, Michalis Hadjithomas, 2018, Nature Biotechnology.

IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes

I-Min A. Chen, Natalia Ivanova, Victor M. Markowitz, 2016, Nucleic Acids Res..

Structural Characterization of the Rous Sarcoma Virus RNA Stability Element

K. Beemon, Michalis Hadjithomas, Jason E Weil, 2008, Journal of Virology.

Hidden genomic evolution in a morphospecies—The landscape of rapidly evolving genes in Tetrahymena

Shelby L. Bidwell, Jie Xiong, Wentao Yang, 2019, PLoS biology.

IMG/M: integrated genome and metagenome comparative data analysis system

I-Min A. Chen, Natalia Ivanova, Victor M. Markowitz, 2016, Nucleic Acids Res..

Correction: Selecting One of Several Mating Types through Gene Segment Joining and Deletion in Tetrahymena thermophila

Michael J. Lawson, Jie Xiong, W. Miao, 2015, PLoS biology.

Selecting One of Several Mating Types through Gene Segment Joining and Deletion in Tetrahymena thermophila

Michael J. Lawson, Jie Xiong, W. Miao, 2013, PLoS biology.

Local admixture of amplified and diversified secreted pathogenesis determinants shapes mosaic Toxoplasma gondii genomes

L. S. Swapna, Michael S. Behnke, J. Parkinson, 2016, Nature Communications.

Total Synthesis of a Functional Designer Eukaryotic Chromosome

Judy Qiu, Jessilyn Dunn, Michalis Hadjithomas, 2014, Science.

Genomic Analysis Through High-Throughput Sequencing

Michalis Hadjithomas, 2015 .

Experimental evidence for the role of domain swapping in the evolution of the histone fold

E. Moudrianakis, Michalis Hadjithomas, 2011, Proceedings of the National Academy of Sciences.

Erratum: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life

Natalia N. Ivanova, Jan P. Meier-Kolthoff, A. Visel, 2018, Nature Biotechnology.

Erratum: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life

Natalia N. Ivanova, Jan P. Meier-Kolthoff, A. Visel, 2018, Nature Biotechnology.

Expansion of RiPP biosynthetic space through integration of pan-genomics and machine learning uncovers a novel class of lantibiotics.

Alexander M. Kloosterman, M. Fischbach, G. V. van Wezel, 2020, PLoS biology.

Development of platforms for functional characterization and production of phenazines using a multi-chassis approach via CRAGE.

Y. Yoshikuni, T. Northen, Katherine B. Louie, 2021, Metabolic engineering.

Variability and Bias in Microbiome Metagenomic Sequencing: an Interlaboratory Study Comparing Experimental Protocols

Stephanie L. Servetas, Keng C. Soh, Matthew G. Bakker, 2023, bioRxiv.

Supporting community annotation and user collaboration in the integrated microbial genomes (IMG) system

Natalia N. Ivanova, N. Kyrpides, V. Markowitz, 2016, BMC Genomics.

Local Admixture of Amplified and Diversified Secreted Local Admixture of Amplified and Diversified Secreted Pathogenesis Determinants Shapes Mosaic Pathogenesis Determinants Shapes Mosaic Toxoplasma gondii Genomes Genomes

L. S. Swapna, Michael S. Behnke, J. Parkinson, 2021 .

Local Admixture of Amplified and Diversified Secreted Pathogenesis Determinants Shapes Mosaic Toxoplasma gondii Genomes

L. S. Swapna, Michael S. Behnke, J. Parkinson, 2020 .

Local admixture of amplified and diversified secreted pathogenesis determinants shapes mosaic Toxoplasma gondii genomes

L. S. Swapna, Michael S. Behnke, J. Dubey, 2016 .

Minimum Information about a Biosynthetic Gene cluster.

M. Smanski, Jan Claesen, B. Shen, 2015, Nature chemical biology.

IMG/M: integrated genome and metagenome comparative data analysis system

Natalia N. Ivanova, N. Kyrpides, V. Markowitz, 2016, Nucleic Acids Res..