Daniel Lobo

发表

Kinetic modeling of microbial growth, enzyme activity, and gene deletions: An integrated model of β‐glucosidase function in Cellvibrio japonicus

Jeanice Hwang, Archana Hari, Raymond Cheng, 2020, Biotechnology and bioengineering.

Gap Junctional Blockade Stochastically Induces Different Species-Specific Head Anatomies in Genetically Wild-Type Girardia dorotocephala Flatworms

Fallon Durant, M. Levin, V. Volpert, 2015, International journal of molecular sciences.

A linear-encoding model explains the variability of the target morphology in regeneration

Michael Levin, Daniel Lobo, M. Levin, 2014, Journal of The Royal Society Interface.

A dynamic architecture of life

A. Prochiantz, A. Steger, U. Grossniklaus, 2015, F1000Research.

Artificial Neural Networks as Models of Robustness in Development and Regeneration: Stability of Memory During Morphological Remodeling

M. Levin, Daniel Lobo, Jennifer Hammelman, 2016 .

Continuous dynamic modeling of regulated cell adhesion

Daniel Lobo, Jason M. Ko, 2019, bioRxiv.

Continuous Dynamic Modeling of Regulated Cell Adhesion: Sorting, Intercalation, and Involution.

Daniel Lobo, Jason M. Ko, 2019, Biophysical journal.

A dynamic architecture of life [version 1; peer review: 2 approved]

A. Prochiantz, U. Grossniklaus, J. Brockes, 2022 .

mergem: merging and comparing genome-scale metabolic models using universal identifiers

Archana Hari, Daniel Lobo, 2022, bioRxiv.

mergem: merging and comparing genome-scale metabolic models using universal identifiers

Archana Hari, Daniel Lobo, 2022, bioRxiv.

Discovering novel phenotypes with automatically inferred dynamic models: a partial melanocyte conversion in Xenopus

M. Levin, Daniel Lobo, Maria Lobikin, 2017, Scientific Reports.

Resting potential, oncogene-induced tumorigenesis, and metastasis: the bioelectric basis of cancer in vivo

M. Levin, Daniel Lobo, Brook T. Chernet, 2012, Physical biology.

Cross-inhibition of Turing patterns explains the self-organized regulatory mechanism of planarian fission.

Daniel Lobo, Samantha Herath, 2020, Journal of theoretical biology.

Fluxer: a web application to compute, analyze and visualize genome-scale metabolic flux networks

Archana Hari, Daniel Lobo, 2020, Nucleic Acids Res..

A bioinformatics expert system linking functional data to anatomical outcomes in limb regeneration

Michael Levin, Daniel Lobo, Erica B. Feldman, 2014, Regeneration.

Graph grammars with string-regulated rewriting

Francisco J. Vico, Jürgen Dassow, Daniel Lobo, 2011, Theor. Comput. Sci..

Modeling regenerative processes with membrane computing

Michael Levin, Manuel García-Quismondo, Daniel Lobo, 2017, Inf. Sci..

Computing a Worm: Reverse-Engineering Planarian Regeneration

Michael Levin, Daniel Lobo, M. Levin, 2017 .

Inferring Regulatory Networks from Experimental Morphological Phenotypes: A Computational Method Reverse-Engineers Planarian Regeneration

Michael Levin, Daniel Lobo, M. Levin, 2015, PLoS Comput. Biol..

Modeling Planarian Regeneration: A Primer for Reverse-Engineering the Worm

Michael Levin, Daniel Lobo, Wendy S. Beane, 2012, PLoS Comput. Biol..

Computational Systems Biology of Morphogenesis.

Daniel Lobo, Jason M. Ko, Reza Mousavi, 2022, Methods in molecular biology.

Evolution of form and function in a model of differentiated multicellular organisms with gene regulatory networks

Francisco J. Vico, Daniel Lobo, F. Vico, 2010, Biosyst..

Automatic Generation of Interactive Multidimensional Phase Portraits

Daniel Lobo, Oluwateniayo Ogunsan, 2022, bioRxiv.

Behavior-Finding: Morphogenetic Designs Shaped by Function

Jose D. Fernández, Francisco J. Vico, Daniel Lobo, 2012, Morphogenetic Engineering, Toward Programmable Complex Systems.

Physiological controls of large‐scale patterning in planarian regeneration: a molecular and computational perspective on growth and form

Michael Levin, Daniel Lobo, Jennifer Hammelman, 2016, Regeneration.

Serotonergic regulation of melanocyte conversion: A bioelectrically regulated network for stochastic all-or-none hyperpigmentation

Michael Levin, Daniel Lobo, Christopher J. Martyniuk, 2015, Science Signaling.

Robust Off- and Online Separation of Intracellularly Recorded Up and Down Cortical States

Francisco J. Vico, Maria V. Sanchez-Vives, Daniel Lobo, 2007, PloS one.

Curation and annotation of planarian gene expression patterns with segmented reference morphologies

Joy Roy, Daniel Lobo, Eric Cheung, 2020, Bioinform..

In situ probe and inhibitory RNA synthesis using streamlined gene cloning with Gibson assembly

Daniel Lobo, Julia R Wolf, A. Wolff, 2022, STAR protocols.

Towards a bioinformatics of patterning: a computational approach to understanding regulative morphogenesis

Michael Levin, Daniel Lobo, Taylor J. Malone, 2012, Biology Open.

mergem: merging and comparing genome-scale metabolic models using universal identifiers

Archana Hari, Daniel Lobo, 2023, bioRxiv.

Inference of dynamic spatial GRN models with multi-GPU evolutionary computation

Daniel Lobo, Sri Harsha Konuru, Reza Mousavi, 2021, Briefings Bioinform..

MoCha: Molecular Characterization of Unknown Pathways

Michael Levin, Daniel Lobo, Jennifer Hammelman, 2016, J. Comput. Biol..

Planform: an application and database of graph-encoded planarian regenerative experiments

Michael Levin, Daniel Lobo, Taylor J. Malone, 2013, Bioinform..

Mechanistic Regulation of Planarian Shape During Growth and Degrowth

Daniel Lobo, Jason M. Ko, Waverly Reginato, 2023, bioRxiv.

Computational discovery and in vivo validation of hnf4 as a regulatory gene in planarian regeneration

Michael Levin, Daniel Lobo, Junji Morokuma, 2016, Bioinform..

Evolution of form and function in a model of differentiated multicellular organisms with gene regulatory networks

F. Vico, Daniel Lobo, 2010, Biosyst..

Emergent Diversity in an Open-Ended Evolving Virtual Community

Jose D. Fernández, Francisco J. Vico, Daniel Lobo, 2012, Artificial Life.

Limbform: a functional ontology-based database of limb regeneration experiments

Michael Levin, Daniel Lobo, Erica B. Feldman, 2014, Bioinform..