E. Peyretaillade

发表

Detecting unknown sequences with DNA microarrays: explorative probe design strategies.

E. Dugat-Bony, P. Peyret, E. Peyretaillade, 2012, Environmental microbiology.

Gene Capture Coupled to High-Throughput Sequencing as a Strategy for Targeted Metagenome Exploration

D. Le Paslier, D. Morgavi, E. Dugat-Bony, 2013, DNA research : an international journal for rapid publication of reports on genes and genomes.

Capturing prokaryotic dark matter genomes.

Céline Ribière, C. Gasc, P. Peyret, 2015, Research in microbiology.

Complete Genome Sequence of Crohn's Disease-Associated Adherent-Invasive E. coli Strain LF82

Eric Peyretaillade, Pierre Peyret, Richard Bonnet, 2010, PloS one.

Sequence capture by hybridization to explore modern and ancient genomic diversity in model and nonmodel organisms

C. Gasc, P. Peyret, E. Peyretaillade, 2016, Nucleic acids research.

Functional Characteristics of a Highly Specific Integrase Encoded by an LTR-Retrotransposon

B. Dastugue, E. Brasset, F. Arnaud, 2008, PloS one.

Bacterial Community Composition of Biological Degreasing Systems and Health Risk Assessment for Workers

P. Peyret, E. Peyretaillade, Corinne Biderre-Petit, 2011, Microbial Ecology.

Probe Design Strategies for Oligonucleotide Microarrays.

E. Dugat-Bony, P. Peyret, E. Peyretaillade, 2016, Methods in molecular biology.

Large Scale Explorative Oligonucleotide Probe Selection for Thousands of Genetic Groups on a Computing Grid: Application to Phylogenetic Probe Design Using a Curated Small Subunit Ribosomal RNA Gene Database

P. Peyret, E. Peyretaillade, N. Parisot, 2014, TheScientificWorldJournal.

Distribution of Dehalococcoidia in the Anaerobic Deep Water of a Remote Meromictic Crater Lake and Detection of Dehalococcoidia-Derived Reductive Dehalogenase Homologous Genes

D. Debroas, E. Dugat-Bony, P. Peyret, 2016, PloS one.

Functional characteristics of a reverse transcriptase encoded by an endogenous retrovirus from Drosophila melanogaster.

B. Dastugue, F. Arnaud, C. Vaury, 2005, Insect biochemistry and molecular biology.

Comparative genomics highlights the unique biology of Methanomassiliicoccales, a Thermoplasmatales-related seventh order of methanogenic archaea that encodes pyrrolysine

S. Gribaldo, William Tottey, P. O’Toole, 2014, BMC Genomics.

Isolation of a highly divergent gene encoding CDC2-related protein kinase from Encephalitozoon cuniculi (Microspora).

P. Peyret, E. Peyretaillade, C. Vivarès, 1999, The Journal of eukaryotic microbiology.

The Human Gut Chip “HuGChip”, an Explorative Phylogenetic Microarray for Determining Gut Microbiome Diversity at Family Level

William Tottey, M. Claesson, P. O’Toole, 2013, PloS one.

Identification of transcriptional signals in Encephalitozoon cuniculi widespread among Microsporidia phylum: support for accurate structural genome annotation

Jay D. Evans, P. Wincker, S. Terrat, 2009, BMC Genomics.

The Prediction and Validation of Small CDSs Expand the Gene Repertoire of the Smallest Known Eukaryotic Genomes

C. Gaspin, Jean-François Pombert, E. Lerat, 2015, PloS one.

ASaiM: a Galaxy-based framework to analyze raw shotgun data from microbiota

Saskia D. Hiltemann, P. Peyret, E. Peyretaillade, 2017, bioRxiv.

Genome Sequence of “Candidatus Methanomethylophilus alvus” Mx1201, a Methanogenic Archaeon from the Human Gut Belonging to a Seventh Order of Methanogens

S. Gribaldo, William Tottey, P. O’Toole, 2012, Journal of bacteriology.

In situ TCE degradation mediated by complex dehalorespiring communities during biostimulation processes

M. David, T. Vogel, D. Lyon, 2012, Microbial biotechnology.

Genome Sequence of “Candidatus Methanomassiliicoccus intestinalis” Issoire-Mx1, a Third Thermoplasmatales-Related Methanogenic Archaeon from Human Feces

S. Gribaldo, William Tottey, P. O’Toole, 2013, Genome Announcements.

Genome Sequence of ”Candidatus Methanomassiliicoccus intestinalis” Issoire-Mx1, a Third Thermoplasmatales-Related Methanogenic Archaeon from Human Feces

S. Gribaldo, William Tottey, P. O’Toole, 2020 .

Draft Genomes of Three Strains Representative of the Bacillus anthracis Diversity Found in France

S. Derzelle, P. Peyret, E. Peyretaillade, 2014, Genome Announcements.

Identification of two new polar tube proteins related to polar tube protein 2 in the microsporidian Antonospora locustae.

P. Peyret, E. Peyretaillade, F. Delbac, 2013, FEMS microbiology letters.

Phylogenetic Analysis of the Small Subunit Ribosomal RNA of Marteilia refringens Validates the Existence of Phylum Paramyxea (Desportes and Perkins, 1990)1

M. Gouy, F. Berthe, P. Peyret, 2000, The Journal of eukaryotic microbiology.

Detecting variants with Metabolic Design, a new software tool to design probes for explorative functional DNA microarray development

Eric Peyretaillade, Pierre Peyret, Corinne Biderre, 2010, BMC Bioinformatics.

Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi

Fabienne Thomarat, Patrick Wincker, Eric Peyretaillade, 2001, Nature.

Microsporidia, amitochondrial protists, possess a 70-kDa heat shock protein gene of mitochondrial evolutionary origin.

M. Gouy, P. Peyret, E. Peyretaillade, 1998, Molecular biology and evolution.

Extreme reduction and compaction of microsporidian genomes.

D. Biron, P. Peyret, E. Peyretaillade, 2011, Research in microbiology.

Microsporidian Invasion Apparatus: Identification of a Novel Polar Tube Protein and Evidence for Clustering ofptp1 and ptp2 Genes in ThreeEncephalitozoon Species

E. Peyretaillade, F. Delbac, C. Vivarès, 2001, Infection and Immunity.

In vitro propagation of the microsporidian pathogen Brachiola algerae and studies of its chromosome and ribosomal DNA organization in the context of the complete genome sequencing project.

C. Jubin, P. Wincker, P. Peyret, 2008, Parasitology international.

Mapping of repetitive and non-repetitive DNA probes to chromosomes of the microsporidian Encephalitozoon cuniculi.

A. Danchin, P. Glaser, P. Peyret, 1997, Gene.

Exploiting the architecture and the features of the microsporidian genomes to investigate diversity and impact of these parasites on ecosystems

Jean-François Pombert, E. Lerat, C. Gasc, 2014, Heredity.

Hijacking of Host Cellular Functions by an Intracellular Parasite, the Microsporidian Anncaliia algerae

D. Biron, C. Brun, Andreas Zanzoni, 2014, PloS one.

Annotation of microsporidian genomes using transcriptional signals

S. Duprat, J. Weissenbach, P. Wincker, 2012, Nature Communications.

Microsporidian Encephalitozoon cuniculi, a unicellular eukaryote with an unusual chromosomal dispersion of ribosomal genes and a LSU rRNA reduced to the universal core.

M. Gouy, B. Michot, P. Peyret, 1998, Nucleic acids research.

The Identification of rRNA Maturation Sites in the Microsporidian Encephalitozoon cuniculi Argues Against the Full Excision of Presumed ITS1 Sequence

P. Peyret, E. Peyretaillade, G. Prensier, 2001, The Journal of eukaryotic microbiology.

Chromosomal Localization of Five Genes in Encephalitozoon cuniculi (Microsporidia)

P. Peyret, E. Peyretaillade, F. Duffieux, 1996, The Journal of eukaryotic microbiology.

Microsporidian Genomes Harbor a Diverse Array of Transposable Elements that Demonstrate an Ancestry of Horizontal Exchange with Metazoans

D. Biron, E. Brasset, E. Lerat, 2014, Genome biology and evolution.

Environmental Pollutant Benzo[a]Pyrene Impacts the Volatile Metabolome and Transcriptome of the Human Gut Microbiota

J. Ratel, E. Engel, S. Denis, 2017, Front. Microbiol..

PhylOPDb: a 16S rRNA oligonucleotide probe database for prokaryotic identification

David R. C. Hill, Delphine Boucher, Jean-François Brugère, 2014, Database J. Biol. Databases Curation.

Oral exposure to environmental pollutant benzo[a]pyrene impacts the intestinal epithelium and induces gut microbial shifts in murine model

N. Barnich, Céline Ribière, P. Peyret, 2016, Scientific Reports.

Metatranscriptomics Reveals the Active Bacterial and Eukaryotic Fibrolytic Communities in the Rumen of Dairy Cow Fed a Mixed Diet

P. Mosoni, E. Forano, P. Peyret, 2017, Front. Microbiol..

PhylArray: phylogenetic probe design algorithm for microarray.

Vincent Barra, David R. C. Hill, Harald Meier, 2007, Bioinformatics.

GeneFarm, structural and functional annotation of Arabidopsis gene and protein families by a network of experts

Arnaud Couloux, Michel Schneider, Stephane Rombauts, 2004, Nucleic Acids Res..

Draft Genome Sequence of Tubulinosema ratisbonensis, a Microsporidian Species Infecting the Model Organism Drosophila melanogaster

A. Couloux, K. Labadie, C. Gaspin, 2019, Microbiology Resource Announcements.

Genome-Wide Analysis of Antigen 43 (Ag43) Variants: New Insights in Their Diversity, Distribution and Prevalence in Bacteria

I. Henderson, M. Desvaux, S. Leroy, 2023, International journal of molecular sciences.

Complete genome sequence of Crohn ’ s disease-associated adherent-invasive E . coli strain LF 82 .

C. Médigue, V. Barbe, C. Dossat, 2019 .

Bacterial community changes during bioremediation of aliphatic hydrocarbon-contaminated soil.

J. Troquet, V. Barra, P. Peyret, 2010, FEMS microbiology ecology.

Comparative genomics of microsporidian genomes reveals a minimal non-coding RNA set and new insights for transcription in minimal eukaryotic genomes

C. Gaspin, Jean-François Pombert, P. Peyret, 2017, DNA research : an international journal for rapid publication of reports on genes and genomes.

High performance computing of oligopeptides complete backtranslation applied to DNA microarray probe design

David R. C. Hill, Eric Peyretaillade, Pierre Peyret, 2016, Concurr. Comput. Pract. Exp..

Fast distributed computing for complete large scale backtranslation of oligopeptides: Application to probe design

David R. C. Hill, Eric Peyretaillade, Pierre Peyret, 2013, 2013 International Conference on High Performance Computing & Simulation (HPCS).

HiSpOD: probe design for functional DNA microarrays

David R. C. Hill, Christophe Gouinaud, Eric Peyretaillade, 2011, Bioinform..

Solution Hybrid Selection Capture for the Recovery of Functional Full-Length Eukaryotic cDNAs From Complex Environmental Samples

R. Marmeisse, M. Girlanda, Céline Ribière, 2014, DNA research : an international journal for rapid publication of reports on genes and genomes.

Characterization of an easy-to-use method for the routine analysis of the central metabolism using an affordable low-resolution GC–MS system: application to Arthrospira platensis

G. Thouand, G. Cogne, Olivier Gonçalves, 2018, Analytical and Bioanalytical Chemistry.

The intracellular parasite Anncaliia algerae induces a massive miRNA down-regulation in human cells

E. Peyretaillade, F. Delbac, H. El Alaoui, 2023, Non-coding RNA research.

KASpOD - a web service for highly specific and explorative oligonucleotide design

Eric Peyretaillade, Pierre Peyret, Nicolas Parisot, 2012, Bioinform..

ASaiM: a Galaxy-based framework to analyze microbiota data

Bérénice Batut, Saskia Hiltemann, Kévin Gravouil, 2018, GigaScience.

parasite Encephalitozoon cuniculi

S. Duprat, J. Weissenbach, M. Gouy, 2001 .

MicroAnnot: A Dedicated Workflow for Accurate Microsporidian Genome Annotation

E. Peyretaillade, F. Delbac, J. Tournayre, 2024, International journal of molecular sciences.