D. Kennedy

发表

Role of outer‐membrane cytochromes MtrC and OmcA in the biomineralization of ferrihydrite by Shewanella oneidensis MR‐1

B. Arey, A. Dohnalkova, J. Fredrickson, 2010, Geobiology.

Electrically conductive bacterial nanowires produced by Shewanella oneidensis strain MR-1 and other microorganisms.

Alice Dohnalkova, In Seop Chang, Byung Hong Kim, 2006, Proceedings of the National Academy of Sciences of the United States of America.

Manganese sulfide formation via concomitant microbial manganese oxide and thiosulfate reduction.

Samantha B. Reed, Ji-Hoon Lee, A. Dohnalkova, 2011, Environmental microbiology.

Microbial reductive transformation of phyllosilicate Fe(III) and U(VI) in fluvial subsurface sediments.

A. Konopka, Ji-Hoon Lee, R. Kukkadapu, 2012, Environmental science & technology.

Vertical stratification of subsurface microbial community composition across geological formations at the Hanford Site.

A. Konopka, J. Fredrickson, D. Kennedy, 2012, Environmental microbiology.

Dispersal limitation and thermodynamic constraints govern spatial structure of permafrost microbial communities

L. Bramer, J. Jansson, R. Chu, 2018, bioRxiv.

Bacterial reduction of crystalline Fe3+ oxides in single phase suspensions and subsurface materials

Steven C. Smith, J. Fredrickson, J. Zachara, 1998 .

Influence of sediment bioreduction and reoxidation on uranium sorption.

L. Zhong, J. Zachara, Chongxuan Liu, 2005, Environmental science & technology.

Dissimilatory Reduction of Fe(III) and Other Electron Acceptors by a Thermus Isolate

S. W. Li, T. Kieft, T. Onstott, 1999, Applied and Environmental Microbiology.

Biotransformation of two-line silica-ferrihydrite by a dissimilatory Fe(III)-reducing bacterium: Formation of carbonate green rust in the presence of phosphate

R. Kukkadapu, J. Fredrickson, J. Zachara, 2004 .

Reduction of U(VI) in goethite (α-FeOOH) suspensions by a dissimilatory metal-reducing bacterium

S. W. Li, J. Fredrickson, J. Zachara, 2000 .

Influence of Mn oxides on the reduction of uranium(VI) by the metal-reducing bacterium Shewanella putrefaciens

A. Dohnalkova, J. Fredrickson, J. Zachara, 2002 .

Deterministic influences exceed dispersal effects on hydrologically‐connected microbiomes

E. Graham, J. Stegen, J. Fredrickson, 2017, Environmental microbiology.

Electron donor-dependent radionuclide reduction and nanoparticle formation by Anaeromyxobacter dehalogenans strain 2CP-C.

R. Sanford, Sara H. Thomas, F. Löffler, 2009, Environmental microbiology.

Oxidative Dissolution Potential of Biogenic and Abiogenic TcO2 in Subsurface Sediments

S. Heald, J. Fredrickson, J. Zachara, 2009 .

Oxidative remobilization of biogenic uranium(IV) precipitates: effects of iron(II) and pH.

L. Zhong, B. Wood, J. Zachara, 2005, Journal of environmental quality.

Reductive biotransformation of Fe in shale-limestone saprolite containing Fe(III) oxides and Fe(II)/Fe(III) phyllosilicates

Steven C. Smith, R. Kukkadapu, J. Fredrickson, 2006 .

Redox transformation and reductive immobilization of Cr(VI) in the Columbia River hyporheic zone sediments

M. Bowden, J. Zachara, A. Plymale, 2017 .

A trans-outer membrane porin-cytochrome protein complex for extracellular electron transfer by Geobacter sulfurreducens PCA

D. R. Bond, D. Richardson, K. Rosso, 2014, Environmental microbiology reports.

Redox reactions of reduced flavin mononucleotide (FMN), riboflavin (RBF), and anthraquinone-2,6-disulfonate (AQDS) with ferrihydrite and lepidocrocite.

J. Fredrickson, J. Zachara, D. Kennedy, 2012, Environmental science & technology.

The mineralogic transformation of ferrihydrite induced by heterogeneous reaction with bioreduced anthraquinone disulfonate (AQDS) and the role of phosphate

Chong-Min Wang, B. Arey, M. Bowden, 2011 .

Ferrous phosphate surface precipitates resulting from the reduction of intragrain 6-line ferrihydrite by Shewanella oneidensis MR-1

Chong-Min Wang, B. Arey, A. Dohnalkova, 2010 .

Metal Reduction and Iron Biomineralization by a Psychrotolerant Fe(III)-Reducing Bacterium, Shewanella sp. Strain PV-4

Jizhong Zhou, H. Vali, Zamin-K. Yang, 2006, Applied and Environmental Microbiology.

Letter: Ferrous hydroxy carbonate is a stable transformation product of biogenic magnetite

R. Kukkadapu, J. Fredrickson, J. Zachara, 2005 .

Deterministic influences exceed dispersal effects on hydrologically-connected microbiomes

E. Graham, J. Stegen, J. Fredrickson, 2017, bioRxiv.

Deterministic assembly processes govern seasonal and spatial variation in microbiomes across hydrologically-connected hyporheic zones

E. Graham, J. Stegen, J. Fredrickson, 2016 .

Eleanor J. Schofield, A. Mehta, J. Sharp, 2009, Environmental science & technology.

Biogeochemical cycling at the aquatic–terrestrial interface is linked to parafluvial hyporheic zone inundation history

E. Graham, J. Stegen, J. Fredrickson, 2017 .

Electrically conductive bacterial nanowires produced by Shewanella oneidensis strain MR-1 and other microorganisms (Proceedings of the National Academy of Sciences of the United States of America (2006) 103, 30, (11358-11363) DOI 10.1073/pnas.0604517103)

Alice Dohnalkova, Kenneth H. Nealson, David W. Kennedy, 2009 .

Carbon cycling at the aquatic-terrestrial interface is linked to parafluvial hyporheic zone inundation history

E. Graham, J. Stegen, J. Fredrickson, 2017 .

Microbial Reduction of Structural Fe(III) in Illite and Goethite

R. Kukkadapu, J. Fredrickson, J. Zachara, 2003 .

Bacterial reduction of crystalline Fe3+ oxides in single phase suspensions and subsurface materials

Steven C. Smith, J. Fredrickson, J. Zachara, 1998 .

Extracellular Reduction of Hexavalent Chromium by Cytochromes MtrC and OmcA of Shewanella oneidensis MR-1

Yuehe Lin, Hong Wu, H. P. Lu, 2011, Applied and Environmental Microbiology.

Identification and Characterization of UndAHRCR-6, an Outer Membrane Endecaheme c-Type Cytochrome of Shewanella sp. Strain HRCR-6

A. Dohnalkova, J. Fredrickson, J. Zachara, 2011, Applied and Environmental Microbiology.

Direct Involvement of Type II Secretion System in Extracellular Translocation of Shewanella oneidensis Outer Membrane Cytochromes MtrC and OmcA

H. Mottaz, D. Richardson, A. Dohnalkova, 2008, Journal of bacteriology.

Exploring the Fuel Flexibility of Microbial Fuel Cells

K. Nealson, F. Mansfeld, O. Bretschger, 2006 .

Comparative biodegradation of alkyl halide insecticides by the white rot fungus, Phanerochaete chrysosporium (BKM-F-1767)

S. Aust, D. Kennedy, J. Bumpus, 1990, Applied and environmental microbiology.

Modeling the Inhibition of the Bacterial Reduction of U(VI) by β-MnO2(s)

A. Dohnalkova, J. Fredrickson, J. Zachara, 2002 .

Inhibition of bacterial U(VI) reduction by calcium.

Scott Fendorf, Scott C Brooks, James K Fredrickson, 2003, Environmental science & technology.

Mineral transformations associated with the microbial reduction of magnetite

T. Onstott, R. Kukkadapu, J. Fredrickson, 2000 .

Reduction of TcO4- by sediment-associated biogenic Fe(II)

John M. Zachara, David W. Kennedy, Steve M. Heald, 2004 .

BIOGENIC IRON MINERALIZATION ACCOMPANYING THE DISSIMILATORY REDUCTION OF HYDROUS FERRIC OXIDE BY A GROUNDWATER BACTERIUM

T. Onstott, J. Fredrickson, J. Zachara, 1998 .

Taxonomic study of aromatic-degrading bacteria from deep-terrestrial-subsurface sediments and description of Sphingomonas aromaticivorans sp. nov., Sphingomonas subterranea sp. nov., and Sphingomonas stygia sp. nov.

D. Balkwill, G. R. Drake, D. White, 1997, International journal of systematic bacteriology.

Geomicrobiology of High-Level Nuclear Waste-Contaminated Vadose Sediments at the Hanford Site, Washington State

Fred J. Brockman, John M. Zachara, Margaret F. Romine, 2004, Applied and Environmental Microbiology.

Groundwater–surface water mixing shifts ecological assembly processes and stimulates organic carbon turnover

W. Nelson, A. Konopka, W. Chrisler, 2015, Nature Communications.

Quantifying community assembly processes and identifying features that impose them

A. Konopka, C. Murray, Xingyuan Chen, 2013, The ISME Journal.

Hydrogenase- and outer membrane c-type cytochrome-facilitated reduction of technetium(VII) by Shewanella oneidensis MR-1.

Samantha B. Reed, A. Dohnalkova, J. Fredrickson, 2007, Environmental microbiology.

Isolation of a High-Affinity Functional Protein Complex between OmcA and MtrC: Two Outer Membrane Decaheme c-Type Cytochromes of Shewanella oneidensis MR-1

Baowei Chen, H. Mottaz, S. Ni, 2006, Journal of bacteriology.

Coupling Spatiotemporal Community Assembly Processes to Changes in Microbial Metabolism

E. Graham, J. Stegen, J. Fredrickson, 2016, Front. Microbiol..

Dechlorination of Carbon Tetrachloride by Fe(II) Associated with Goethite

David W. Kennedy, Jonathan S. Fruchter, James E. Amonette, 2000 .

Nitrate bioreduction in redox-variable low permeability sediments.

C. Thompson, J. Fredrickson, J. Zachara, 2016, The Science of the total environment.

Geochemical and Microbial Community Attributes in Relation to Hyporheic Zone Geological Facies

W. Nelson, Timothy Scheibe, C. Murray, 2017, Scientific Reports.

Single-cell genomics reveals metabolic strategies for microbial growth and survival in an oligotrophic aquifer.

Cindy J. Castelle, R. Stepanauskas, A. Konopka, 2014, Microbiology.

Identification and Characterization of MtoA: A Decaheme c-Type Cytochrome of the Neutrophilic Fe(II)-Oxidizing Bacterium Sideroxydans lithotrophicus ES-1

M. Lipton, D. Richardson, E. Merkley, 2012, Front. Microbio..

Fe-phyllosilicate redox cycling organisms from a redox transition zone in Hanford 300 Area sediments

E. Roden, D. Kennedy, Xueju Lin, 2013, Front. Microbiol..

Contribution of extracellular polymeric substances from Shewanella sp. HRCR-1 biofilms to U(VI) immobilization.

N. Isern, B. Cao, H. Beyenal, 2011, Environmental science & technology.

Dispersal limitation and thermodynamic constraints govern spatial structure of permafrost microbial communities.

L. Bramer, J. Jansson, R. Chu, 2018, FEMS microbiology ecology.

The Comparative Risks of Bacterial Contamination between a Venturi Atomizer and a Positive Displacement Atomizer

D. Kennedy, T. Wolfe, T. Hillman, 2002, American journal of rhinology.

Influences of organic carbon speciation on hyporheic corridor biogeochemistry and microbial ecology

Rosalie K Chu, Evan V Arntzen, James K Fredrickson, 2018, Nature Communications.

Coupling among Microbial Communities, Biogeochemistry, and Mineralogy across Biogeochemical Facies

Micah D. Miller, A. Konopka, C. Murray, 2016, Scientific Reports.

Distinct temporal diversity profiles for nitrogen cycling genes in a hyporheic microbiome

W. Nelson, E. Graham, J. Stegen, 2020, PloS one.

Temporal dynamics of nitrogen cycle gene diversity in a hyporheic microbiome

W. Nelson, E. Graham, J. Stegen, 2019, bioRxiv.

Multi ‘omics comparison reveals metabolome biochemistry, not microbiome composition or gene expression, corresponds to elevated biogeochemical function in the hyporheic zone

James C. Stegen, David W. Kennedy, Carrie D. Nicora, 2018, bioRxiv.

Multi ‘omics comparison reveals metabolome biochemistry, not microbiome composition or gene expression, corresponds to elevated biogeochemical function in the hyporheic zone

W. Nelson, S. Purvine, C. Nicora, 2018, bioRxiv.

c-Type Cytochrome-Dependent Formation of U(IV) Nanoparticles by Shewanella oneidensis

Liang Shi, Barry Lai, James K Fredrickson, 2006, PLoS biology.

Colonization Habitat Controls Biomass, Composition, and Metabolic Activity of Attached Microbial Communities in the Columbia River Hyporheic Corridor

B. Larget, E. Roden, J. Stegen, 2017, Applied and Environmental Microbiology.

Influences of organic carbon speciation on hyporheic corridor biogeochemistry and microbial ecology

W. Nelson, A. Konopka, W. Chrisler, 2018, Nature Communications.

Carbon Inputs From Riparian Vegetation Limit Oxidation of Physically Bound Organic Carbon Via Biochemical and Thermodynamic Processes

L. Bramer, E. Graham, J. Stegen, 2017 .

Carbon inputs from riparian vegetation limit oxidation of physically-bound organic carbon via biochemical and thermodynamic processes

L. Bramer, E. Graham, J. Stegen, 2017, bioRxiv.

Riparian vegetation limits oxidation of thermodynamically unfavorable bound-carbon stocks along an aquatic interface

E. Graham, J. Stegen, D. Kennedy, 2017 .

Distribution of Microbial Biomass and Potential for Anaerobic Respiration in Hanford Site 300 Area Subsurface Sediment

A. Konopka, A. Peacock, J. Fredrickson, 2011, Applied and Environmental Microbiology.

Competitive reduction of pertechnetate (99TcO4-) by dissimilatory metal reducing bacteria and biogenic Fe(II).

S. Heald, A. Dohnalkova, J. Fredrickson, 2011, Environmental science & technology.

The influence of cultivation methods on Shewanella oneidensis physiology and proteome expression

Grigoriy E. Pinchuk, H. Mottaz, M. Lipton, 2007, Archives of Microbiology.

Impacts of Shewanella oneidensis c‐type cytochromes on aerobic and anaerobic respiration

Samantha B. Reed, Jizhong Zhou, Yangyang Dong, 2010, Microbial biotechnology.

Modeling the inhibition of the bacteral reduction of U(VI) by beta-MnO2(s).

A. Dohnalkova, J. Fredrickson, J. Zachara, 2002, Environmental Science and Technology.

Mineral transformation associated with the microbial reductionof magnetite

T. Onstott, R. Kukkadapu, J. Fredrickson, 2000 .

Bioreduction of hematite nanoparticles by the dissimilatory iron reducing bacterium Shewanella oneidensis MR-1

Michael F. Hochella, David W. Kennedy, Andrew S. Madden, 2009 .

Correction for Electrically conductive bacterial nanowires produced by Shewanella oneidensis strain MR-1 and other micro-organisms

Byung Hong Kim, Grigoriy E. Pinchuk, K. Nealson, 2009 .

High-Throughput 3D Visualization of Large Volumes at High Resolution by 3ViewTM

A. Dohnalkova, J. Fredrickson, D. Kennedy, 2010 .

Geochemical and Microbial Community Attributes in Relation to Hyporheic Zone Geological Facies

W. Nelson, Timothy Scheibe, C. Murray, 2017, Scientific Reports.

J . K . Fredrickson , T . C . Onstott , Y . A . Gorby

T. Kieft, T. Onstott, J. Fredrickson, 1998 .

Electron donor-dependent radionuclide reduction and nanoparticle formation by Anaeromyxobacter dehalogenans strain 2CP-C.

R. Sanford, Sara H. Thomas, F. Löffler, 2009, Environmental microbiology.

Correction for Gorby et al., Electrically conductive bacterial nanowires produced by Shewanella oneidensis strain MR-1 and other microorganisms

Grigoriy E. Pinchuk, Samantha B. Reed, Kazuya Watanabe, 2009, Proceedings of the National Academy of Sciences.