J. Stiller

发表

Discovery of Single Nucleotide Polymorphisms in Complex Genomes Using SGSautoSNP

J. Batley, Pradeep Ruperao, D. Edwards, 2012, Biology.

Identiﬁcation and characterization of candidate Rlm4 blackleg resistance genes in Brassica napus using next-generation sequencing Using NGS to identify candidate

J. Batley, D. Edwards, H. Raman, 2012 .

Identification and characterization of candidate Rlm 4 blackleg resistance genes in Brassica napus using next-generation sequencing

J. Batley, D. Edwards, H. Raman, 2012 .

Identification and characterization of candidate Rlm4 blackleg resistance genes in Brassica napus using next-generation sequencing.

J. Batley, D. Edwards, H. Raman, 2012, Plant biotechnology journal.

Single nucleotide polymorphism discovery from wheat next-generation sequence data.

J. Batley, U. Baumann, D. Edwards, 2012, Plant biotechnology journal.

WheatGenome.info: an integrated database and portal for wheat genome information.

D. Edwards, L. Smits, Kaitao Lai, 2012, Plant & cell physiology.

Future tools for association mapping in crop plants.

J. Batley, Michael Imelfort, Chris Duran, 2010, Genome.

Identification and characterization of more than 4 million intervarietal SNPs across the group 7 chromosomes of bread wheat.

C. K. Chan, J. Batley, Pradeep Ruperao, 2015, Plant biotechnology journal.

High-resolution skim genotyping by sequencing reveals the distribution of crossovers and gene conversions in Cicer arietinum and Brassica napus

C. K. Chan, J. Batley, Pradeep Ruperao, 2015, Theoretical and Applied Genetics.

Sequence-Based Analysis of Translocations and Inversions in Bread Wheat (Triticum aestivum L.)

J. Rogers, K. Mayer, K. Eversole, 2013, PloS one.

A pan-transcriptome analysis shows that disease resistance genes have undergone more selection pressure during barley domestication

J. Stiller, Chunji Liu, Jiri Stiller, 2019, BMC Genomics.

Considering founding and variable genomes is critical in studying polyploid evolution

Yaxi Liu, Guoyue Chen, Yu-ming Wei, 2019, bioRxiv.

An analysis of the role of the ShSUT1 sucrose transporter in sugarcane using RNAi suppression.

D. Glassop, A. Rae, C. Grof, 2017, Functional plant biology : FPB.

MEDIATOR18 and MEDIATOR20 confer susceptibility to Fusarium oxysporum in Arabidopsis thaliana

J. Manners, P. Schenk, K. Kazan, 2017, PloS one.

Ethylene insensitivity conferred by a mutated Arabidopsis ethylene receptor gene alters nodulation in transgenic Lotus japonicus.

G. Stacey, P. Gresshoff, J. Stiller, 2009, Annals of botany.

Rhizobial and Mycorrhizal Symbioses in Lotus japonicus Require Lectin Nucleotide Phosphohydrolase, Which Acts Upstream of Calcium Signaling1[C][W][OA]

M. Etzler, A. Rose, A. Edwards, 2012, Plant Physiology.

Molecular mapping of qualitative and quantitative loci for resistance to Leptosphaeria maculans causing blackleg disease in canola (Brassica napus L.)

J. Batley, N. Wratten, Xiaowu Wang, 2012, Theoretical and Applied Genetics.

Chromosome-specific sequencing reveals an extensive dispensable genome component in wheat

J. Doležel, Dengcai Liu, J. Vrána, 2016, Scientific Reports.

Sequencing and assembly of low copy and genic regions of isolated Triticum aestivum chromosome arm 7DS.

J. Batley, D. Edwards, Adam Skarshewski, 2011, Plant biotechnology journal.

T-DNA tagging of nodulation- and root-related genes in Lotus japonicus : Expression patterns and potential for promoter trapping and insertional mutagenesis

M. Chiurazzi, P. Gresshoff, R. Mirabella, 1999 .

Identifying barley pan-genome sequence anchors using genetic mapping and machine learning

Meixue Zhou, Jinran Wu, J. Stiller, 2020, Theoretical and Applied Genetics.

Extensive Pericentric Rearrangements in the Bread Wheat (Triticum aestivum L.) Genotype “Chinese Spring” Revealed from Chromosome Shotgun Sequence Data

J. Doležel, Yu-ming Wei, K. Devos, 2014, Genome biology and evolution.

Transcriptome analysis of Brachypodium during fungal pathogen infection reveals both shared and distinct defense responses with wheat

R. Henry, J. Vogel, J. Manners, 2017, Scientific Reports.

Effects of agrobacterial oncogenes in kidney vetch (Anthyllis vulneraria L.)

I. Macháčková, J. Stiller, Vít Na≲ sinec, 1992, Plant Cell Reports.

Promoter trapping in Lotus japonicus reveals novel root and nodule GUS expression domains.

D. Buzas, S. Tabata, Yasukazu Nakamura, 2005, Plant & cell physiology.

Identification of genes bordering breakpoints of the pericentric inversions on 2B, 4B, and 5A in bread wheat (Triticum aestivum L.).

Yaxi Liu, Q. Jiang, Yu-ming Wei, 2015, Genome.

Putative interchromosomal rearrangements in the hexaploid wheat (Triticum aestivum L.) genotype ‘Chinese Spring’ revealed by gene locations on homoeologous chromosomes

J. Doležel, Yu-ming Wei, J. Stiller, 2015, BMC Evolutionary Biology.

Isolation and sequencing of a single copy of an introgressed chromosome from a complex genome for gene and SNP identification

B. Zheng, Adam L Healey, J. Stiller, 2021, Theoretical and Applied Genetics.

An Assessment of Heavy Ion Irradiation Mutagenesis for Reverse Genetics in Wheat (Triticum aestivum L.)

J. Manners, T. Abe, T. Fitzgerald, 2015, PloS one.

Second-generation sequencing for gene discovery in the Brassicaceae.

D. Edwards, Sahana Manoli, A. Hayward, 2012, Plant biotechnology journal.

The draft genome of a wild barley genotype reveals its enrichment in genes related to biotic and abiotic stresses compared to cultivated barley

Qi Feng, Qiang Zhao, B. Han, 2019, Plant biotechnology journal.

Molecular analysis of the pathway for the synthesis of thiol tripeptides in the model legume Lotus japonicus.

S. Tabata, E. Asamizu, P. Gresshoff, 2003, Molecular plant-microbe interactions : MPMI.

Unlocking inaccessible historical genomes preserved in formalin

D. Gardiner, Alicia Grealy, J. Stiller, 2021, bioRxiv.

Translational control of fungal gene expression during the wheat-Fusarium graminearum interaction

D. Gardiner, K. Kazan, Udaykumar Kage, 2021, bioRxiv.

Proliferating Floral Organs (Pfo), a Lotus japonicus gene required for specifying floral meristem determinacy and organ identity, encodes an F-box protein.

J. Stougaard, N. Sandal, J. Stiller, 2003, The Plant journal : for cell and molecular biology.

A plant regulator controlling development of symbiotic root nodules

Leif Schauser, Jens Stougaard, L. Schauser, 1999, Nature.

Sequence divergence between spelt and common wheat

F. Qi, Qiang Zhao, B. Han, 2018, Theoretical and Applied Genetics.

Transgenic Plants: Agrobacterium-Mediated Transformation of the Diploid Legume Lotus japonicus

J. Stougaard, T. Thykjaer, J. Stiller, 1994 .

Investigating the Association between Flowering Time and Defense in the Arabidopsis thaliana-Fusarium oxysporum Interaction

J. Manners, K. Kazan, J. Powell, 2015, PloS one.

Fusarium oxysporum Triggers Tissue-Specific Transcriptional Reprogramming in Arabidopsis thaliana

J. Manners, K. Kazan, J. Powell, 2015, PloS one.

Validation and delineation of a locus conferring Fusarium crown rot resistance on 1HL in barley by analysing transcriptomes from multiple pairs of near isogenic lines

Meixue Zhou, A. Habib, J. Powell, 2019, bioRxiv.

The defence‐associated transcriptome of hexaploid wheat displays homoeolog expression and induction bias

R. Henry, J. Manners, T. Fitzgerald, 2016, Plant biotechnology journal.

Delineating a locus conferring Fusarium crown rot resistance on chromosome arm 1HL in barley by developing and analysing a large population derived from near isogenic lines

Meixue Zhou, Haiyan Hu, J. Stiller, 2020 .

Validation and delineation of a locus conferring Fusarium crown rot resistance on 1HL in barley by analysing transcriptomes from multiple pairs of near isogenic lines

Meixue Zhou, A. Habib, J. Powell, 2019, BMC Genomics.

Fine mapping of a large-effect QTL conferring Fusarium crown rot resistance on the long arm of chromosome 3B in hexaploid wheat

Qi Feng, Qiang Zhao, J. Manners, 2015, BMC Genomics.

Fine mapping of a large-effect QTL conferring Fusarium crown rot resistance on the long arm of chromosome 3B in hexaploid wheat

Qi Feng, Qiang Zhao, B. Han, 2015, BMC Genomics.

Transformation of Lotus japonicus using the herbicide resistance bar gene as a selectable marker.

D. Buzas, P. Gresshoff, J. Stiller, 2001, Journal of experimental botany.

High frequency transformation and regeneration of transgenic plants in the model legume Lotus japonicus

M. Chiurazzi, P. Gresshoff, J. Stiller, 1997 .

Molecular mapping of qualitative and quantitative loci for resistance to Leptosphaeria maculans causing blackleg disease in canola (Brassica napus L.)

N. Wratten, Xiaowu Wang, D. Edwards, 2012, Theoretical and Applied Genetics.

Transcriptome and Allele Specificity Associated with a 3BL Locus for Fusarium Crown Rot Resistance in Bread Wheat

Qi Feng, Qiang Zhao, B. Han, 2014, PloS one.

High-resolution skim genotyping by sequencing reveals the distribution of crossovers and gene conversions in Cicer arietinum and Brassica napus

C. K. Chan, Pradeep Ruperao, R. Varshney, 2015, Theoretical and Applied Genetics.

An Integrated Functional Genomics and Genetics Approach for the Plant’s Function in Symbiotic Nodulation

S. Grimmond, P. Gresshoff, K. Meksem, 2000 .

Symbiotic mutants deficient in nodule establishment identified after T-DNA transformation of Lotus japonicus

T. Thykjær, L. Schauser, J. Stougaard, 1998, Molecular and General Genetics MGG.

Transient Nod factor-dependent gene expression in the nodulation-competent zone of soybean (Glycine max [L.] Merr.) roots.

D. Edwards, P. Gresshoff, M. Lorenc, 2012, Plant biotechnology journal.

A bacterial artificial chromosome library of Lotus japonicus constructed in an Agrobacterium tumefaciens-transformable vector.

P. Gresshoff, K. Meksem, D. Lightfoot, 2001, Molecular plant-microbe interactions : MPMI.

Genetic and physical mapping of flowering time loci in canola (Brassica napus L.)

N. Wratten, E. Dennis, D. Edwards, 2012, Theoretical and Applied Genetics.

A high-throughput pipeline for detecting locus-specific polymorphism in hexaploid wheat (Triticum aestivum L.)

Yaxi Liu, J. Stiller, Jian Ma, 2015, Plant Methods.

High resolution skim genotyping by sequencing reveals the distribution of crossovers and gene conversions in chickpea and canola

Pradeep Ruperao, R. Varshney, P. Bayer, 2016 .

Dispersion and domestication shaped the genome of bread wheat.

D. Edwards, Kaitao Lai, J. Doležel, 2013, Plant biotechnology journal.

Transcriptome Analysis of Heat Shock Factor C2a Over-Expressing Wheat Roots Reveals Ferroptosis-like Cell Death in Heat Stress Recovery

S. Adkins, K. Kazan, Udaykumar Kage, 2023, International journal of molecular sciences.

Sequencing wheat chromosome arm 7BS delimits the 7BS/4AL translocation and reveals homoeologous gene conservation

Hana Šimková, Emma Campbell, Adam Skarshewski, 2011, Theoretical and Applied Genetics.

The Fusarium crown rot pathogen Fusarium pseudograminearum triggers a suite of transcriptional and metabolic changes in bread wheat (Triticum aestivum L.)

R. Henry, J. Manners, F. Gubler, 2016, Annals of botany.

Sequencing wheat chromosome arm 7BS delimits the 7BS/4AL translocation and reveals homoeologous gene conservation

Adam Skarshewski, D. Edwards, Kaitao Lai, 2012, Theoretical and Applied Genetics.

Transcriptome analysis of Brachypodium during fungal pathogen infection reveals both shared and distinct defense responses with wheat

R. Henry, J. Vogel, J. Manners, 2017, Scientific Reports.

Identification and characterization of genes on a single subgenome in the hexaploid wheat (Triticum aestivum L.) genotype 'Chinese Spring'.

Yaxi Liu, Q. Jiang, J. Stiller, 2017, Genome.

A high-resolution genetic map of the cereal crown rot pathogen Fusarium pseudograminearum provides a near-complete genome assembly.

S. Stephen, D. Gardiner, K. Kazan, 2018, Molecular plant pathology.

High-throughput FACS-based mutant screen identifies a gain-of-function allele of the Fusarium graminearum adenylyl cyclase causing deoxynivalenol over-production.

D. Gardiner, K. Kazan, J. Stiller, 2016, Fungal genetics and biology : FG & B.

The maize transposable element Ac is mobile in the legume Lotus japonicus

Jonathan D. G. Jones, J. Stougaard, T. Thykjaer, 1995, Plant Molecular Biology.

Identification of systemic responses in soybean nodulation by xylem sap feeding and complete transcriptome sequencing reveal a novel component of the autoregulation pathway.

D. Edwards, P. Gresshoff, M. Lorenc, 2012, Plant biotechnology journal.

Enzyme-driven metabolomic screening: a proof-of-principle method for discovery of plant defence compounds targeted by pathogens.

Michelle L Colgrave, Kemal Kazan, J. Manners, 2016, The New phytologist.

A multiple near isogenic line (multi-NIL) RNA-seq approach to identify candidate genes underpinning QTL

S. Shabala, D. Gardiner, Meixue Zhou, 2018, Theoretical and Applied Genetics.

Putative interchromosomal rearrangements in the hexaploid wheat (Triticum aestivum L.) genotype ‘Chinese Spring’ revealed by gene locations on homoeologous chromosomes

J. Doležel, J. Stiller, G. Yan, 2015, BMC Evolutionary Biology.

Genome Sequences of Pseudomonas spp. Isolated from Cereal Crops

J. Manners, R. Shivas, D. Gardiner, 2013, Genome Announcements.

Genetic, Biochemical, and Morphological Diversity of the Legume Biofuel Tree Pongamia pinnata

D. Edwards, P. Gresshoff, P. Scott, 2013 .

Genomic Analysis of Xanthomonas translucens Pathogenic on Wheat and Barley Reveals Cross-Kingdom Gene Transfer Events and Diverse Protein Delivery Systems

J. Manners, D. Gardiner, K. Kazan, 2014, PloS one.

A pan-transcriptome analysis shows that disease resistance genes have undergone more selection pressure during barley domestication

J. Stiller, Chunji Liu, Yanling Ma, 2019, BMC Genomics.

Century-old chromatin architecture preserved with formaldehyde

Jennifer M. Taylor, C. Frère, J. Stiller, 2023, bioRxiv.

Targeted identification of genomic regions using TAGdb

D. Edwards, Kaitao Lai, Michael Imelfort, 2010, Plant Methods.

Sequence analysis of the canola genome

D. Edwards, Adam Skarshewski, Kaitao Lai, 2011 .

Genetic and physical mapping of flowering time loci in oilseed rape (Brassica napus L.)

N. Wratten, D. Edwards, E. Dennis, 2016 .

Differences between diploid donors are the main contributing factor for subgenome asymmetry measured in either gene ratio or relative diversity in allopolyploids.

Yaxi Liu, Guoyue Chen, Haiyan Hu, 2021, Genome.

Genome Sequence of Fusarium graminearum Isolate CS3005

D. Gardiner, K. Kazan, J. Stiller, 2014, Genome Announcements.

Second-generation sequencing for gene discovery in the Brassicaceae.

D. Edwards, Sahana Manoli, A. Hayward, 2012, Plant biotechnology journal.

Gene Discovery in Legume Nodulation: From Soybean to Lotus japonicus

P. Gresshoff, B. Carroll, A. Men, 1998 .