Xiaojun Nie

发表

Preparation of high molecular weight gDNA and bacterial artificial chromosome (BAC) libraries in plants.

S. S. Biradar, Xiaojun Nie, Kewei Feng, 2014, Methods in molecular biology.

Shifting the limits in wheat research and breeding using a fully annotated reference genome

Jonathan D. G. Jones, Karl G. Kugler, J. Rogers, 2018, Science.

Global Identification of MicroRNAs and Their Targets in Barley under Salinity Stress

W. Tong, W. Ji, Xiaojun Nie, 2015, PloS one.

Hybrid sequencing reveals insight into heat sensing and signaling of bread wheat

Chuang Ma, Qixin Sun, Siyuan Chen, 2019, The Plant journal : for cell and molecular biology.

N6‐methyladenosine regulatory machinery in plants: composition, function and evolution

Xiaojun Nie, S. Weining, Hong Yue, 2019, Plant biotechnology journal.

Identification and Analysis of RNA Editing Sites in the Chloroplast Transcripts of Aegilops tauschii L.

Meng Wang, Hui Liu, Xiaojun Nie, 2016, Genes.

Genome-Wide Identification and Expression Analysis of the HD-Zip Gene Family in Wheat (Triticum aestivum L.)

M. Wang, Xiaojun Nie, S. Weining, 2018, Genes.

Genome-Wide Identification, Evolution, and Co-expression Network Analysis of Mitogen-Activated Protein Kinase Kinase Kinases in Brachypodium distachyon

W. Tong, Xiaojun Nie, Kewei Feng, 2016, Front. Plant Sci..

The improved assembly of 7DL chromosome provides insight into the structure and evolution of bread wheat

Weiming He, L. Mao, W. Tong, 2019, Plant biotechnology journal.

Genome-wide identification, phylogeny and expression analysis of AP2/ERF transcription factors family in Brachypodium distachyon

M. Wang, Xiaojun Nie, Kewei Feng, 2016, BMC Genomics.

Integrate Small RNA and Degradome Sequencing to Reveal Drought Memory Response in Wheat (Triticum aestivum L.)

N. Su, Xiaojun Nie, S. Weining, 2022, International journal of molecular sciences.

Genetic Diversity of Transcription Factor Genes in Triticum and Mining for Promising Haplotypes for Beneficial Agronomic Traits

Xiaojun Nie, Licao Cui, Guang Yang, 2022, Frontiers in Plant Science.

Genome-Wide Identification and Characterization of Salinity Stress-Responsive miRNAs in Wild Emmer Wheat (Triticum turgidum ssp. dicoccoides)

Xiaojun Nie, Kewei Feng, S. Weining, 2017, Genes.

Genome-wide sequence and expressional analysis of autophagy Gene family in bread wheat (Triticum aestivum L.).

Xiaojun Nie, S. Weining, Ting Zhang, 2018, Journal of plant physiology.

Genome-wide identification and characterization of caffeoyl-coenzyme A O-methyltransferase genes related to the Fusarium head blight response in wheat

Ruoyu Zhang, Xiaojun Nie, S. Weining, 2021, BMC genomics.

Comparative analysis of codon usage patterns in chloroplast genomes of the Asteraceae family

F. You, Xiaojun Nie, Kewei Feng, 2013, Plant Molecular Biology Reporter.

Characteristics and Expression Pattern of MYC Genes in Triticum aestivum, Oryza sativa, and Brachypodium distachyon

Xiaojun Nie, Yue Liu, Shoukun Chen, 2019, Plants.

Genome-wide identification, expression profiles and regulatory network of MAPK cascade gene family in barley

Xiaojun Nie, Licao Cui, Guang Yang, 2019, BMC Genomics.

Genome‐wide microsatellite characterisation and marker development in Chenopodium quinoa

Xiaojun Nie, S. Weining, X. Chang, 2019, Annals of Applied Biology.

Population transcriptomic analysis identifies the comprehensive lncRNAs landscape of spike in wheat (Triticum aestivum L.)

Xiaojun Nie, Licao Cui, Pingchuan Deng, 2022, BMC Plant Biology.

Direct comparison of β-glucan content in wild and cultivated barley

Xiaojun Nie, S. Weining, Diddugodage Chamila Jeewani, 2018 .

GENOME-WIDE IDENTIFICATION AND ANALYSIS OF THE CSLF GENE FAMILY IN BARLEY (HORDEUM VULGARE L.)

Xiaojun Nie, S. Weining, G. Xing, 2020, Journal of Microbiology, Biotechnology and Food Sciences.

Multi-omics reveals the key and specific miRNA-mRNA modules underlying salt tolerance in wild emmer wheat (Triticum dicoccoides L.)

R. Cao, Qi Zhao, Xiaojun Nie, 2022, BMC Genomics.

BGFD: an integrated multi-omics database of barley gene families

Qinglin Ke, Xiaojun Nie, Licao Cui, 2022, BMC Plant Biology.

Comparative analysis of codon usage patterns in chloroplast genomes of the Asteraceae family

F. You, Xiaojun Nie, Kewei Feng, 2014, Plant Molecular Biology Reporter.

Selection and evaluation of reference genes for quantitative gene expression analysis in broomcorn millet (Panicum miliaceum L.)

Siyan Liu, M. Wang, Xiaojun Nie, 2016, Journal of Plant Biology.

Transcriptional Dynamics of Grain Development in Barley (Hordeum vulgare L.)

Xiaojun Nie, S. Weining, Xianghong Du, 2019, International journal of molecular sciences.

Melatonin: A Small Molecule but Important for Salt Stress Tolerance in Plants

W. Tong, Xiaojun Nie, S. Weining, 2019, International journal of molecular sciences.

Genome-wide identification, evolution and expression analysis of NAC gene family under salt stress in wild emmer wheat (Triticum dicoccoides. L).

Qi Zhao, Xiaojun Nie, Haibo Hu, 2023, International journal of biological macromolecules.

Conservation analysis of long non-coding RNAs in plants

Shu Liu, Liang Wu, Xiaojun Nie, 2018, Science China Life Sciences.

Conservation analysis of long non-coding RNAs in plants

Shu Liu, Liang Wu, Xiaojun Nie, 2017, Science China Life Sciences.

Comparative Analysis of the Transcriptional Response of Tolerant and Sensitive Wheat Genotypes to Drought Stress in Field Conditions

Xiaojun Nie, Kewei Feng, Shuzuo Lv, 2018, Agronomy.

Genome-Wide Identification of Wheat ZIP Gene Family and Functional Characterization of the TaZIP13-B in Plants

Hongjie Li, Xiaojun Nie, Shoucheng Chai, 2021, Frontiers in Plant Science.

Co-Regulation of Long Non-Coding RNAs with Allele-Specific Genes in Wheat Responding to Powdery Mildew Infection

W. Ji, Xiaojun Nie, Hong Zhang, 2020, Agronomy.

Frequent intra- and inter-species introgression shapes the landscape of genetic variation in bread wheat

Zhonghua Wang, N. Chen, Yu Jiang, 2019, Genome Biology.

Genome-Wide Investigation of Spliceosomal SM/LSM Genes in Wheat (Triticum aestivum L.) and Its Progenitors

W. Tong, N. Su, Xiaojun Nie, 2021, Agronomy.

De novo Assembly and Characterization of the Transcriptome of Broomcorn Millet (Panicum miliaceum L.) for Gene Discovery and Marker Development

Hui Liu, Xiaojun Nie, S. Weining, 2016, Front. Plant Sci..

Molecular Sciences Identification and Characterization of Micrornas from Barley (hordeum Vulgare L.) by High-throughput Sequencing

Xianghong Du, Xiaojun Nie, S. S. Biradar, 2022 .

Computational Identification and Comparative Analysis of miRNAs in Wheat Group 7 Chromosomes

Maohui Luo, W. Tong, D. Edwards, 2013, Plant Molecular Biology Reporter.

Genome-wide Identification, Evolution and Expression Analysis of Basic Helix-loop-helix (bHLH) Gene Family in Barley (Hordeum vulgare L.)

Qinglin Ke, Tingting Li, Xiaojun Nie, 2020, Current genomics.

Frequent intra- and inter-species introgression shapes the landscape of genetic variation in bread wheat

Zhonghua Wang, N. Chen, Yu Jiang, 2019, Genome Biology.

Evolution and Identification of the WRKY Gene Family in Quinoa (Chenopodium quinoa)

Xiaojun Nie, S. Weining, Lanying Wang, 2019, Genes.

Transcriptome-wide identification and expression profiles of the WRKY transcription factor family in Broomcorn millet (Panicum miliaceum L.)

Siyan Liu, M. Wang, Xiaojun Nie, 2016, BMC Genomics.

Genome-wide identification, phylogeny and expressional profiles of mitogen activated protein kinase kinase kinase (MAPKKK) gene family in bread wheat (Triticum aestivum L.)

M. Wang, Xiaojun Nie, Kewei Feng, 2016, BMC Genomics.

Additional file 1: Figure S1. of Transcriptome-wide identification and expression profiles of the WRKY transcription factor family in Broomcorn millet (Panicum miliaceum L.)

Siyan Liu, Xiaojun Nie, S. Weining, 2016 .

Genome-wide characterization of microsatellites in Triticeae species: abundance, distribution and evolution

M. Wang, W. Tong, Xiaojun Nie, 2016, Scientific Reports.

Complete Chloroplast Genome Sequence of a Major Invasive Species, Crofton Weed (Ageratina adenophora)

F. Wan, S. S. Biradar, Xiaojun Nie, 2012, PloS one.

Comprehensive evaluating of wild and cultivated emmer wheat (Triticum turgidum L.) genotypes response to salt stress

Xiaojun Nie, Kewei Feng, S. Weining, 2018, Plant Growth Regulation.

Sequencing and Characterization of the Whole Chloroplast Genome of Triticum paleocolchicum Men

Lining Zhang, Xiaojun Nie, Tong Wang, 2019 .

A novel high-accuracy genome assembly method utilizing a high-throughput workflow

Rajeev K. Varshney, Jiang Xu, Liping Xing, 2020, bioRxiv.

The TIFY Gene Family in Wheat and its Progenitors: Genome-wide Identification, Evolution and Expression Analysis

Jun Li, W. Ji, Xiaojun Nie, 2019, Current genomics.

Complete Chloroplast Genome Sequence of Broomcorn Millet (Panicum miliaceum L.) and Comparative Analysis with Other Panicoideae Species

W. Tong, Hui Liu, Xiaojun Nie, 2018, Agronomy.

A large‐scale genomic association analysis identifies the candidate causal genes conferring stripe rust resistance under multiple field environments

R. Singh, Z. Kang, Dejun Han, 2020, Plant biotechnology journal.

Construction and Characterization of a Bacterial Artificial Chromosome Library for the Hexaploid Wheat Line 92R137

Zhonghua Wang, Xianming Chen, Lili Huang, 2014, BioMed research international.

Comparative Analysis of Asteraceae Chloroplast Genomes: Structural Organization, RNA Editing and Evolution

Xiaojun Nie, Kewei Feng, S. Weining, 2015, Plant Molecular Biology Reporter.

Genome-Wide Identification, Evolution, and Expression Analysis of LBD Transcription Factor Family in Bread Wheat (Triticum aestivum L.)

Ruoyu Zhang, Xiaojun Nie, S. Weining, 2021, Frontiers in Plant Science.

Genome-wide analysis of Calcium-dependent protein kinase (CDPK) family and functional characterization of TaCDPK25-U in response to drought stress in wheat

Yimin Yan, Xiaojun Nie, S. Weining, 2023, Environmental and Experimental Botany.

Genome-wide identification of PYL gene family in wheat: Evolution, expression and 3D structure analysis.

W. Tong, Xiaojun Nie, S. Weining, 2020, Genomics.

Genome-wide identification, phylogeny and expression analysis of AP2/ERF transcription factors family in Brachypodium distachyon

M. Wang, Xiaojun Nie, Kewei Feng, 2016, BMC Genomics.

Comparative analysis of β-glucan content in wild and cultivated barley (Hordeum vulgare)

Xiaojun Nie, S. Weining, G. Xing, 2018, The Indian Journal of Agricultural Sciences.

Genomic and Phenotypic Divergence in Wild Barley Driven by Microgeographic Adaptation

B. Levi, Xiaojun Nie, S. Weining, 2020, Advanced science.

Characterization of microRNAs and their targets in wild barley (Hordeum vulgare subsp. spontaneum) using deep sequencing.

Xiaojun Nie, Kewei Feng, S. Weining, 2016, Genome.

Identification and characterisation of RNA editing sites in chloroplast transcripts of einkorn wheat (Triticum monococcum)

Xiaojun Nie, S. Weining, G. Xing, 2018 .

Genome-Wide Identification and Characterization of RNA/DNA Differences Associated with Drought Response in Wheat

Xiaojun Nie, Guang Yang, Mengqi Li, 2022, International journal of molecular sciences.

Patterns and impacting factors of gene evolutionary rate between wild and cultivated emmer wheat (Triticum turgidum)

Xiaojun Nie, S. Weining, Jianan Lu, 2022, Journal of Systematics and Evolution.

QTL MAPPING OF PLANT HEIGHT , SPIKE LENGTH , PEDUNCLE LENGTH AND NUMBER OF GRAINS PER PLANT IN BARLEY ( HORDEUM VULGARE L . ) USING ‘ STEPTOE / MOREX ’ DH POPULATION GROWN IN NORTHWEST OF CHINA

A. H. Lahori, Xiaojun Nie, S. Weining, 2018 .

BarleyExpDB: an integrative gene expression database for barley

Xiaojun Nie, Licao Cui, Yihan Li, 2023, BMC Plant Biology.

Comparative Analysis of Asteraceae Chloroplast Genomes: Structural Organization, RNA Editing and Evolution

F. Wan, Xiaojun Nie, Kewei Feng, 2015, Plant Molecular Biology Reporter.

Genome-Wide Identification and Analysis of MAPK and MAPKK Gene Families in Bread Wheat (Triticum aestivum L.)

M. Wang, Xiaojun Nie, S. Weining, 2017, Genes.

Analysis of codon usage patterns of the chloroplast genomes in the Poaceae family

S. S. Biradar, Xiaojun Nie, S. Weining, 2012 .

Genome-wide identification of ZIP gene family members in wheat

Hongjie Li, Xiaojun Nie, Shoucheng Chai, 2019 .

Transcriptome-wide identification and expression profiles of the WRKY transcription factor family in Broomcorn millet (Panicum miliaceum L.)

Siyan Liu, M. Wang, Xiaojun Nie, 2016, BMC Genomics.

Meteorological Influences on Spatiotemporal Variation of PM2.5 Concentrations in Atmospheric Pollution Transmission Channel Cities of the Beijing–Tianjin–Hebei Region, China

Jiang-bo Gao, Xiangming Xiao, Xiaojun Nie, 2022, International journal of environmental research and public health.

Large-scale identification of microsatellites for a major invasive weed, Ageratina adenophora, using the Illumina sequencing technology.

F. Wan, S. S. Biradar, Xiaojun Nie, 2014 .

Genetic basis of expression and splicing underlying spike architecture in wheat (Triticum aestivum L.)

R. Henry, Mingxun Chen, Dejun Han, 2023, bioRxiv.

Selection and evaluation of reference genes for quantitative gene expression analysis in broomcorn millet (Panicum miliaceum L.)

Siyan Liu, M. Wang, Xiaojun Nie, 2016, Journal of Plant Biology.

Shifting the limits in wheat research and breeding using a fully annotated reference genome

Jonathan D. G. Jones, Karl G. Kugler, J. Rogers, 2018, Science.

Genome-wide identi cation and characterization of caffeoyl-coenzyme A O-methyltransferase genes related to Fusarium head blight response in wheat

Ruoyu Zhang, Xiaojun Nie, S. Weining, 2021 .

Genome-wide identification, phylogeny and expressional profiles of mitogen activated protein kinase kinase kinase (MAPKKK) gene family in bread wheat (Triticum aestivum L.)

M. Wang, Xiaojun Nie, Kewei Feng, 2016, BMC Genomics.

Genome-wide identification and characterization of caffeoyl-coenzyme A O-methyltransferase genes related to the Fusarium head blight response in wheat

Xiaojun Nie, S. Weining, Guang Yang, 2021, BMC Genomics.

Detection and characterization of spike architecture based on deep learning and X-ray computed tomography in barley

Xiaojun Nie, S. Weining, Yimin Ling, 2023, Plant Methods.

Combined GWAS and eGWAS reveals the genetic basis underlying drought tolerance in emmer wheat (Triticum turgidum L.).

Xiaojun Nie, S. Weining, Licao Cui, 2024, The New phytologist.