A. Bernini

发表

NMR studies of BPTI aggregation by using paramagnetic relaxation reagents.

M. Botta, V. Venditti, A. Barge, 2006, Biochimica et biophysica acta.

Probing the protein space for extending the detection of weak homology folds.

A. Bernini, O. Spiga, N. Niccolai, 2013, Journal of theoretical biology.

Machine learning application for development of a data-driven predictive model able to investigate quality of life scores in a rare disease

B. Marzocchi, D. Braconi, L. Millucci, 2020, Orphanet Journal of Rare Diseases.

Interactive alkaptonuria database: investigating clinical data to improve patient care in a rare disease

Giovanna Maria Dimitri, B. Marzocchi, D. Giustarini, 2019, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

Peptides and small molecules blocking the CXCR4/CXCL12 axis overcome bone marrow‑induced chemoresistance in acute leukemias.

A. Arcangeli, S. Pillozzi, A. Bernini, 2018, Oncology reports.

Hydration studies on the archaeal protein Sso7d using NMR measurements and MD simulations

R. Consonni, A. Bernini, O. Spiga, 2011, BMC Structural Biology.

Molecular definition of the interaction between a tumor-specific tetrabranched peptide and LRP6 receptor

A. Bernini, L. Bracci, J. Brunetti, 2020, Amino Acids.

Chip-Based and Wearable Tools for Isothermal Amplification and Electrochemical Analysis of Nucleic Acids

Patrick Severin Sfragano, I. Palchetti, O. Crociani, 2022, Chemosensors.

Antioxidant activity of ferulic acid alkyl esters in a heterophasic system: a mechanistic insight.

A. Bernini, A. Sega, R. M. Facino, 2004, Journal of agricultural and food chemistry.

Near-infrared quantum dots labelled with a tumor selective tetrabranched peptide for in vivo imaging

A. Pini, E. Paccagnini, P. Lupetti, 2018, Journal of Nanobiotechnology.

The patient’s pathway for breast cancer in the COVID‐19 era: An Italian single‐center experience

A. Bernini, D. Casella, A. Neri, 2020, The breast journal.

Stable peptide inhibitors prevent binding of lethal and oedema factors to protective antigen and neutralize anthrax toxin in vivo.

C. Ricci, A. Pini, F. Tonello, 2006, The Biochemical journal.

A structurally driven analysis of thiol reactivity in mammalian albumins.

V. Venditti, A. Bernini, O. Spiga, 2011, Biopolymers.

Rational design and molecular diversity for the construction of anti-alpha-bungarotoxin antidotes with high affinity and in vivo efficiency.

A. Pini, A. Bernini, L. Bracci, 2003, Chemistry & biology.

Unraveling Heparan Sulfate Proteoglycan Binding Motif for Cancer Cell Selectivity

A. Pini, E. Karousou, A. Passi, 2019, Front. Oncol..

A molecular spectroscopy approach for the investigation of early phase ochronotic pigment development in Alkaptonuria

F. Manetti, M. C. Baratto, A. Atrei, 2021, Scientific Reports.

cDNA cloning and expression of the phytoene synthase gene in sunflower.

A. Bernini, M. Fambrini, C. Pugliesi, 2005, Journal of plant physiology.

Investigations into the killing activity of an antimicrobial peptide active against extensively antibiotic-resistant K. pneumon iae and P. aeruginosa.

A. Pini, E. Paccagnini, P. Lupetti, 2017, Biochimica et biophysica acta. Biomembranes.

An improved NMR approach for metabolomics of intact serum samples.

D. Campanacci, I. Palchetti, D. Grasso, 2022, Analytical biochemistry.

NMR Studies on Structure and Dynamics of the Monomeric Derivative of BS-RNase: New Insights for 3D Domain Swapping

Andrea Bernini, Rolf Boelens, Neri Niccolai, 2012, PloS one.

NMR studies of lysozyme surface accessibility by using different paramagnetic relaxation probes.

V. Venditti, W. Wong, A. Bernini, 2006, Journal of the American Chemical Society.

Machine learning application for patient stratification and phenotype/genotype investigation in a rare disease

Giovanna Maria Dimitri, Andrea Bernini, Ottavia Spiga, 2021, Briefings Bioinform..

The protonation thermodynamics of cyclodextrin-containing polymers for drug inclusion

M. Casolaro, R. Mendichi, A. Bernini, 2010 .

Structure and function correlations between the rat liver threonine deaminase and aminotransferases.

M. Scarselli, A. Bernini, O. Spiga, 2003, Biochimica et biophysica acta.

NMR studies of the inclusion complex between β-cyclodextrin and paroxetine

M. Scarselli, A. Bernini, O. Spiga, 2004 .

Nuclear Magnetic Resonance of Amino Acids, Peptides, and Proteins

A. Bernini, P. Temussi, 2011 .

Cross-host evolution of severe acute respiratory syndrome coronavirus in palm civet and human.

Guo-Ping Zhao, Zong-Ming Guo, Antoine Danchin, 2005, Proceedings of the National Academy of Sciences of the United States of America.

Efficacy and toxicity of the antimicrobial peptide M33 produced with different counter-ions

A. Pini, G. Rossolini, A. Bernini, 2011, Amino Acids.

Molecular Basis of Branched Peptides Resistance to Enzyme Proteolysis

A. Pini, A. Bernini, L. Bracci, 2007, Chemical biology & drug design.

Probing the surface of a sweet protein: NMR study of MNEI with a paramagnetic probe

P. Temussi, M. Scarselli, C. Dalvit, 2001, Protein science : a publication of the Protein Society.

Synthetic Peptides outside the Spike Protein Heptad Repeat Regions as Potent Inhibitors of Sars-Associated Coronavirus

Y. Guan, Honglin Chen, K. Yuen, 2005, Antiviral therapy.

Cancer selectivity of tetrabranched neurotensin peptides is generated by simultaneous binding to sulfated glycosaminoglycans and protein receptors.

A. Pini, A. Bernini, L. Bracci, 2013, Journal of medicinal chemistry.

Journal of Virology & Antiviral Research Identification of Inhibitors Binding Site of Ebola L Polymerase Based on its Homology Model

A. Bernini, O. Spiga, A. Trezza, 2016 .

A Computational Approach From Gene to Structure Analysis of the Human ABCA4 Transporter Involved in Genetic Retinal Diseases.

Andrea Bernini, Andrea Sodi, Ottavia Spiga, 2017, Investigative ophthalmology & visual science.

Mimicking the nicotinic receptor binding site by a single chain Fv selected by competitive panning from a synthetic phage library

N Niccolai, A. Pini, A. Bernini, 2001, Journal of neurochemistry.

Homogentisate 1,2-dioxygenase (HGD) gene variants, their analysis and genotype–phenotype correlations in the largest cohort of patients with AKU

J. Královičová, D. Ascher, L. Ranganath, 2019, European Journal of Human Genetics.

Tertiary structure prediction of SARS coronavirus helicase

V. Venditti, J. Tanner, Jian-Dong Huang, 2006, Biochemical and Biophysical Research Communications.

Interdomain Tilt Angle Determines Integrin-dependent Function of the Ninth and Tenth FIII Domains of Human Fibronectin*

I. Campbell, C. F. van der Walle, A. Bernini, 2004, Journal of Biological Chemistry.

Protein–thiol substitution or protein dethiolation by thiol/disulfide exchange reactions: The albumin model

V. Venditti, A. Bernini, O. Spiga, 2007, Proteins.

ProCoCoA: A quantitative approach for analyzing protein core composition

Anna Tramontano, Diego Garlaschelli, Andrea Bernini, 2013, Comput. Biol. Chem..

Prediction of quaternary assembly of SARS coronavirus peplomer

Jian-Dong Huang, Pei Hao, Guoping Zhao, 2004, Biochemical and Biophysical Research Communications.

Atom depth analysis delineates mechanisms of protein intermolecular interactions.

A. Bernini, N. Niccolai, Davide Alocci, 2013, Biochemical and biophysical research communications.

Probing protein surface accessibility with solvent and paramagnetic molecules

Andrea Bernini, Ottavia Spiga, Neri Niccolai, 2009 .

Three-dimensional computation of atom depth in complex molecular structures

Andrea Bernini, Ottavia Spiga, Neri Niccolai, 2005, Bioinform..

Biochemical filtering of a protein-protein docking simulation identifies the structure of a complex between a recombinant antibody fragment and alpha-bungarotoxin.

Andrea Bernini, Neri Niccolai, Luisa Bracci, 2003, The Biochemical journal.

Long range electromagnetic effects drive protein-protein approaches: an egg of Coulomb

A. Toccafondi, A. Bernini, N. Niccolai, 2022, bioRxiv.

Untargeted NMR Metabolomics Reveals Alternative Biomarkers and Pathways in Alkaptonuria

D. Grasso, B. Marzocchi, A. Santucci, 2022, International journal of molecular sciences.

Pharmacological Chaperones and Protein Conformational Diseases: Approaches of Computational Structural Biology

D. Grasso, A. Santucci, A. Bernini, 2023, International journal of molecular sciences.

Transient pockets as mediators of gas molecules routes inside proteins: The case study of dioxygen pathway in homogentisate 1, 2-dioxygenase and its implication in Alkaptonuria development

Andrea Bernini, Silvia Galderisi, Ottavia Spiga, 2020, Comput. Biol. Chem..

Toward a generalized computational workflow for exploiting transient pockets as new targets for small molecule stabilizers: Application to the homogentisate 1, 2-dioxygenase mutants at the base of rare disease Alkaptonuria

Fabrizio Manetti, Andrea Bernini, Ottavia Spiga, 2017, Comput. Biol. Chem..

ApreciseKUre: an approach of Precision Medicine in a Rare Disease

Andrea Bernini, Ottavia Spiga, Vittoria Cicaloni, 2017, BMC Medical Informatics and Decision Making.

Homogentisic acid induces aggregation and fibrillation of amyloidogenic proteins.

Andrea Bernini, Pietro Lupetti, Ottavia Spiga, 2017, Biochimica et biophysica acta. General subjects.

MD and NMR studies of α-bungarotoxin surface accessibility

V. Venditti, A. Bernini, O. Spiga, 2007 .

A branched peptide mimotope of the nicotinic receptor binding site is a potent synthetic antidote against the snake neurotoxin alpha-bungarotoxin.

Andrea Bernini, Neri Niccolai, Luisa Bracci, 2002, Biochemistry.

NMR and MD studies on the interaction between ligand peptides and alpha-bungarotoxin.

M. Scarselli, A. Bernini, O. Spiga, 2004, Journal of molecular biology.

NMR structure of alpha-bungarotoxin free and bound to a mimotope of the nicotinic acetylcholine receptor.

M. Scarselli, A. Bernini, O. Spiga, 2002, Biochemistry.

Molecular modelling of S1 and S2 subunits of SARS coronavirus spike glycoprotein

A. Bernini, O. Spiga, A. Ciutti, 2003, Biochemical and Biophysical Research Communications.

Searching for protein binding sites from Molecular Dynamics simulations and paramagnetic fragment-based NMR studies.

M. Assfalg, H. Molinari, A. Arcangeli, 2014, Biochimica et biophysica acta.

Efficacy and toxicity of the antimicrobial peptide M33 produced with different counter-ions

A. Pini, G. Rossolini, A. Bernini, 2012, Amino Acids.

Hot spot mapping of protein surfaces with TEMPOL: Bovine pancreatic RNase A as a model system.

D. Picone, R. Spadaccini, A. Bernini, 2017, Biochimica et biophysica acta. Proteins and proteomics.

NMR studies on the surface accessibility of the archaeal protein Sso7d by using TEMPOL and Gd(III)(DTPA-BMA) as paramagnetic probes.

V. Venditti, R. Consonni, A. Bernini, 2008, Biophysical chemistry.

NMR studies of protein hydration and TEMPOL accessibility.

H. Molinari, P. Temussi, M. Scarselli, 2003, Journal of molecular biology.

NMR Studies of Protein Surface Accessibility*

H. Molinari, G. Esposito, P. Temussi, 2001, The Journal of Biological Chemistry.

NMR studies of the inclusion complex between beta-cyclodextrin and paroxetine.

M. Scarselli, A. Bernini, O. Spiga, 2004, European Journal of Pharmaceutical Sciences.

Process calculi for biological processes

Pierpaolo Degano, Moreno Falaschi, Linda Brodo, 2018, Natural Computing.

Genetic differentiation between Cinta Senese and commercial pig breeds using microsatellite

A. Bernini, O. Spiga, N. Niccolai, 2012 .

On the mechanisms of bananin activity against severe acute respiratory syndrome coronavirus

J. Tanner, Jian-Dong Huang, B. Zheng, 2010, The FEBS journal.

The surface accessibility of {\alpha}-bungarotoxin monitored by a novel paramagnetic probe

M. Botta, V. Venditti, W. Wong, 2011, 1105.0126.

The surface accessibility of α-bungarotoxin monitored by a novel paramagnetic probe

M. Botta, W. Wong, A. Bernini, 2011 .

Metal ion complexation and folding of linear peptides.

M. Scarselli, A. Bernini, O. Spiga, 2002, Biophysical chemistry.

Tendamistat surface accessibility to the TEMPOL paramagnetic probe

A. Lesk, H. Molinari, G. Esposito, 1999, Journal of biomolecular NMR.

Genetic Analysis of Patients with Congenital Hypogonadotropic Hypogonadism: A Case Series

P. Maltese, M. Bertelli, A. Bernini, 2023, International journal of molecular sciences.

The use of a ditopic Gd(III) paramagnetic probe for investigating α-bungarotoxin surface accessibility.

M. Botta, V. Venditti, W. Wong, 2012, Journal of inorganic biochemistry.

Circulating gastrin and ghrelin levels in patients with colorectal cancer: correlation with tumour stage, Helicobacter pylori infection and BMI.

A. Bernini, R. Leoncini, E. Marinello, 2007, Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie.

Homogentisate 1,2-dioxygenase (HGD) gene variants, their analysis and genotype–phenotype correlations in the largest cohort of patients with AKU

J. Královičová, D. Ascher, L. Ranganath, 2019, European Journal of Human Genetics.

On the dynamics of water molecules at the protein solute interfaces

N Niccolai, V. Venditti, A. Bernini, 2004, Homeopathy.

NMR studies on Ni(II) induced cyclization of a histidine‐tagged peptide

M. Scarselli, A. Bernini, O. Spiga, 2002, Journal of peptide science : an official publication of the European Peptide Society.

F. Manetti, A. Santucci, A. Bernini, 2017, Comput. Biol. Chem..

Comparison of the conformation of floral odorants: an NMR and molecular dynamics studyElectronic supplementary information (ESI) available: additional NMR data for compounds 1???4. See http://www.rsc.org/suppdata/p2/b2/b205255e/

A. Bernini, A. Sega, C. Anselmi, 2002 .

Phytochemical Composition, Anti-Inflammatory Property, and Anti-Atopic Effect of Chaetomorpha linum Extract

E. Dreassi, A. Bernini, O. Spiga, 2024, Marine drugs.