R. Viner

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Ultra High Resolution Linear Ion Trap Orbitrap Mass Spectrometer (Orbitrap Elite) Facilitates Top Down LC MS/MS and Versatile Peptide Fragmentation Modes*

M. Mann, A. Makarov, E. Denisov, 2011, Molecular & Cellular Proteomics.

A draft map of the mouse pluripotent stem cell spatial proteome

L. Gatto, K. Lilley, A. M. Arias, 2016, Nature Communications.

Protein modification during biological aging: selective tyrosine nitration of the SERCA2a isoform of the sarcoplasmic reticulum Ca2+-ATPase in skeletal muscle.

C. Schöneich, D. Ferrington, R. Viner, 1999 .

Protein modification during biological aging: selective tyrosine nitration of the SERCA2a isoform of the sarcoplasmic reticulum Ca2+-ATPase in skeletal muscle.

C. Schöneich, D. Ferrington, R. Viner, 1999, The Biochemical journal.

First Community-Wide, Comparative Cross-Linking Mass Spectrometry Study

Karl Mechtler, Michael J MacCoss, Jürgen Cox, 2019, Analytical chemistry.

The distinctive gastric fluid proteome in gastric cancer reveals a multi-biomarker diagnostic profile

Oi Lian Kon, Soo Yong Tan, Rosa Viner, 2008, BMC Medical Genomics.

TMTpro reagents: a set of isobaric labeling mass tags enables simultaneous proteome-wide measurements across 16 samples

Devin K. Schweppe, Edward L. Huttlin, S. Gygi, 2020, Nature Methods.

Robust and Sensitive Relative Quantification of Isobarically Labeled Glycans by LTQ Orbitrap Robust and Sensitive Relative Quantification of Isobarically Labeled Glycans by LTQ Orbitrap Qy

D. Horn, R. Orlando, R. Viner, 2009 .

A Novel Germline Variant in CSF3R Reduces N-Glycosylation and Exerts Potent Oncogenic Effects in Leukemia.

O. Abdel-Wahab, C. Bertozzi, P. Azadi, 2018, Cancer research.

Toward Increased Reliability, Transparency, and Accessibility in Cross-linking Mass Spectrometry.

Karl Mechtler, Andrew R Jones, Christoph H Borchers, 2020, Structure.

Analysis of Proteins, Protein Complexes, and Organellar Proteomes Using Sheathless Capillary Zone Electrophoresis - Native Mass Spectrometry

Marshall Bern, A. M. Belov, Alexander R Ivanov, 2017, Journal of The American Society for Mass Spectrometry.

Effect of different solubilizing agents on the aggregation state and catalytic activity of two purified rabbit cytochrome P450 isozymes, CYP1A2 (LM4) and CYP2B4 (LM2).

M. Alterman, V. Kagan, R. Viner, 1995, Biochemical and biophysical research communications.

Expanding the depth and sensitivity of cross-link identification by differential ion mobility using FAIMS

R. Viner, C. Frese, F. Liu, 2020, bioRxiv.

Towards Increased Reliability, Transparency and Accessibility in Crosslinking Mass Spectrometry

Andrew R. Jones, J. Cox, A. Sali, 2020, 2007.00383.

Probing H2O2-mediated Structural Dynamics of the Human 26S Proteasome Using Quantitative Cross-linking Mass Spectrometry (QXL-MS)*

Lan Huang, Xiaorong Wang, R. Viner, 2019, Molecular & Cellular Proteomics.

Quantitative proteomics and terminomics to elucidate the role of ubiquitination and proteolysis in adaptive immunity

C. Overall, R. Viner, T. Klein, 2016, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences.

A small heat shock protein from Artemia franciscana is phosphorylated at serine 50.

J. Clegg, T. MacRae, R. Viner, 2004, Biochimica et biophysica acta.

Influence of trehalose on the molecular chaperone activity of p26, a small heat shock/α-crystallin protein

J. Clegg, R. Viner, 2001, Cell stress & chaperones.

A Fully Automated Workflow for Glycopeptide Analysis

L. Xin, R. Viner, B. Delanghe, 2011 .

A Novel Workflow for Glycopeptide Analysis Using Cellulose-Based Separation Cartridges, TMT-Labeling and LTQ Orbitrap ETD

Edward D Bodnar, H. Perreault, R. Viner, 2010 .

A streamlined workflow for twoplexing of N-linked glycan analysis using light (12C6) and heavy (13C6) isotopologues of 3-aminobenzenesulfonic acid.

J. Bones, R. Viner, S. Carillo, 2020, Analytica chimica acta.

In-depth analyses of native N-linked glycans facilitated by high-performance anion exchange chromatography-pulsed amperometric detection coupled to mass spectrometry

R. Harfouche, C. Pohl, J. Rohrer, 2017, Analytical and Bioanalytical Chemistry.

Ultra High Resolution Linear Ion Trap Orbitrap Mass Spectrometer (Orbitrap Elite) Facilitates Top Down LC MS/MS and Versatile Peptide Fragmentation Modes* □ S

A. Makarov, E. Denisov, Annette Michalski, 2012 .

Automated Glycan Structural Isomer Differentiation Using Bioinformatics Tool.

Ningombam Sanjib Meitei, R. Viner, J. Saba, 2012 .

Combining high-energy C-trap dissociation and electron transfer dissociation for protein O-GlcNAc modification site assignment.

Lance Wells, Rosa Viner, David Horn, 2011, Journal of proteome research.

Novel Glycan Column Technology for the LC-MS Analysis of Labeled and Native N-Glycans Released from Proteins and Antibodies

Udayanath Aich, Z. Hao, Xiaodong Liu, 2013 .

A Complete Workflow Solution for Monoclonal Antibody Glycoform Characterization Combining a Novel Glycan Column Technology and BenchTop Orbitrap LC-MS / MS

Udayanath Aich, Z. Hao, Xiaodong Liu, 2013 .

MLC Seq: De novo sequencing of full-length tRNA isoforms by mass ladder complementation

J. Russo, X. Bao, Qi Chen, 2021, bioRxiv.

Accumulation of nitrotyrosine on the SERCA2a isoform of SR Ca‐ATPase of rat skeletal muscle during aging: a peroxynitrite‐mediated process?

A. Hühmer, C. Schöneich, D. Ferrington, 1996, FEBS letters.

Nitric oxide-dependent modification of the sarcoplasmic reticulum Ca-ATPase: localization of cysteine target sites.

C. Schöneich, R. Viner, T. Williams, 2000, Free radical biology & medicine.

An allosteric MALT1 inhibitor is a molecular corrector rescuing function in an immunodeficient patient

R. Hersperger, C. Overall, M. Renatus, 2019, Nature Chemical Biology.

Benzophenone-sensitized photooxidation of sarcoplasmic reticulum membranes: site-specific modification of the Ca(2+)-ATPase.

R. Viner, D. Bigelow, A. Krainev, 1997, Free radical biology & medicine.

Peroxynitrite modification of protein thiols: oxidation, nitrosylation, and S-glutathiolation of functionally important cysteine residue(s) in the sarcoplasmic reticulum Ca-ATPase.

C. Schöneich, R. Viner, T. Williams, 1999, Biochemistry.

C. Schöneich, D. Ferrington, R. Viner, 1999, Mechanisms of Ageing and Development.

Direct Mass Spectrometry Analysis of Protein Complexes and Intact Proteins up to >70 kDa from Tissue

H. Cooper, A. Konijnenberg, R. Viner, 2019, Analytical chemistry.

In vivo aging of rat skeletal muscle sarcoplasmic reticulum Ca-ATPase. Chemical analysis and quantitative simulation by exposure to low levels of peroxyl radicals.

C. Schöneich, D. Ferrington, R. Viner, 1997, Biochimica et biophysica acta.

Comparison of Immobilized Protease and In-Solution Approaches for MS Sample Preparation

E. Hilder, Ryan D. Bomgarden, R. Viner, 2012 .

Advantages of the LTQ Orbitrap for Protein Identification in Complex Digests

V. Zabrouskov, R. Viner, S. Peterman, 2016 .

Identification of oxidation-sensitive peptides within the cytoplasmic domain of the sarcoplasmic reticulum Ca2+-ATPase.

C. Schöneich, R. Viner, T. Williams, 1997, Biochemistry.

Top-Down Hydrogen-Deuterium Exchange Analysis of Protein Structures Using Ultraviolet Photodissociation.

C. Borchers, V. Zabrouskov, E. Petrotchenko, 2018, Analytical chemistry.

Probing H2O2-mediated Structural Dynamics of the Human 26S Proteasome Using Quantitative Cross-linking Mass Spectrometry (QXL-MS).

Lan Huang, Xiaorong Wang, R. Viner, 2019, Molecular & cellular proteomics : MCP.

Optimization of Crosslinked Peptide Analysis on an Orbitrap Fusion Lumos Mass Spectrometer

A. Heck, Ryan D. Bomgarden, R. Viner, 2016 .

Selective early cardiolipin peroxidation after traumatic brain injury: an oxidative lipidomics analysis

Rosa Viner, P. Kochanek, R. Clark, 2007, Annals of neurology.

Sensitive and Accurate Quantitation of Phosphopeptides Using TMT Isobaric Labeling Technique.

Ryan D. Bomgarden, R. Viner, A. Robitaille, 2017, Journal of proteome research.

The paracaspase MALT1 cleaves HOIL1 reducing linear ubiquitination by LUBAC to dampen lymphocyte NF-κB signalling

Joshua M. Scurll, M. Gold, A. Dufour, 2015, Nature Communications.

Mass spectral analysis of neuropeptide expression and distribution in the nervous system of the lobster Homarus americanus.

Lingjun Li, R. Viner, Ruibing Chen, 2010, Journal of proteome research.

High Performance Anion Exchange and Hydrophilic Interaction Liquid Chromatography Approaches for Comprehensive Mass Spectrometry-Based Characterization of the N-Glycome of a Recombinant Human Erythropoietin.

C. Pohl, J. Rohrer, R. Viner, 2018, Journal of Proteome Research.

Combining native and ‘omics’ mass spectrometry to identify endogenous ligands bound to membrane proteins

Denis Shutin, Carol V. Robinson, Joseph Gault, 2020, Nature Methods.

The proteasome-interacting Ecm29 protein disassembles the 26S proteasome in response to oxidative stress

Ilan E. Chemmama, A. Sali, Lan Huang, 2017, The Journal of Biological Chemistry.

Proteome-Wide Analysis of Trypanosoma cruzi Exponential and Stationary Growth Phases Reveals a Subcellular Compartment-Specific Regulation

A. Silber, M. M. Teixeira, R. Viner, 2018, Genes.

Breast tumors educate the proteome of stromal tissue in an individualized but coordinated manner

Li Ding, David Fenyö, Jason M Held, 2017, Science Signaling.

High resolution top-down experimental strategies on the Orbitrap platform.

Rosa Viner, Eugen Damoc, R. Viner, 2017, Journal of proteomics.

Glycoproteomic Analysis of the Secretome of Human Endothelial Cells

Marshall Bern, Manuel Mayr, Rosa Viner, 2013, Molecular & Cellular Proteomics.

Novel LC-MS² product dependent parallel data acquisition function and data analysis workflow for sequencing and identification of intact glycopeptides.

Tsung-Hsien Pu, Kay-Hooi Khoo, Rosa Viner, 2014, Analytical chemistry.

Interlaboratory Study on Differential Analysis of Protein Glycosylation by Mass Spectrometry: The ABRF Glycoprotein Research Multi-Institutional Study 2012*

Haixu Tang, Daniel Kolarich, Wolfgang Jabs, 2013, Molecular & Cellular Proteomics.

Increasing the Productivity of Glycopeptides Analysis by Using Higher-Energy Collision Dissociation-Accurate Mass-Product-Dependent Electron Transfer Dissociation

Rosa Viner, S. Dutta, R. Viner, 2012, International journal of proteomics.

Optimized fragmentation schemes and data analysis strategies for proteome-wide cross-link identification

Rosa Viner, Fan Liu, Albert J. R. Heck, 2017, Nature Communications.

Glycoproteomic Analysis of the Aortic Extracellular Matrix in Marfan Patients

A. Zwinderman, M. Jahangiri, M. Mayr, 2019, Arteriosclerosis, thrombosis, and vascular biology.

Glycoproteomics Reveals Decorin Peptides With Anti-Myostatin Activity in Human Atrial Fibrillation

Thomas Thum, Marshall Bern, Manuel Mayr, 2016, Circulation.

Quantification of post-translationally modified peptides of bovine alpha-crystallin using tandem mass tags and electron transfer dissociation.

V. Zabrouskov, R. Viner, T. Second, 2009, Journal of proteomics.

Quantitation of iTRAQ Labeled Peptides Using Higher Energy Collisional Dissociation on the LTQ Orbitrap

V. Zabrouskov, R. Viner, Terry Zhang, 2008 .

Cross-linking/Mass Spectrometry: A Community-Wide, Comparative Study Towards Establishing Best Practice Guidelines

Yi Shi, Karl Mechtler, Lan Huang, 2018 .

Regulation of the human 26 S proteasome by Ecm 29 1 The Proteasome-Interacting Ecm 29 Protein Disassembles the 26 S Proteasome in Response to Oxidative Stress

Ilan E. Chemmama, A. Sali, Lan Huang, 2017 .

The oxidative inactivation of sarcoplasmic reticulum Ca(2+)-ATPase by peroxynitrite.

A. Hühmer, C. Schöneich, R. Viner, 1996, Free radical research.

Comprehensive glycoprofiling of the epimastigote and trypomastigote stages of Trypanosoma cruzi.

M. Larsen, M. Thaysen‐Andersen, R. Viner, 2017, Journal of proteomics.

TMTpro reagents: a set of isobaric labeling mass tags enables simultaneous proteome-wide measurements across 16 samples

Devin K. Schweppe, Edward L. Huttlin, S. Gygi, 2020, Nature Methods.

Improving Spectral Validation Rates in Hydrogen-Deuterium Exchange Data Analysis.

D. Schriemer, R. Viner, S. Raval, 2021, Analytical chemistry.

Retention Time Prediction for TMT-Labeled Peptides in Proteomic LC-MS Experiments.

V. Spicer, O. Krokhin, R. Viner, 2022, Journal of proteome research.

Tagless extraction‐retentate chromatography: A new global protein digestion strategy for monitoring differential protein expression

S. Weinberger, R. Viner, Patrick Ho, 2002, Electrophoresis.

TomahaqCompanion: A Tool for the Creation and Analysis of Isobaric Label Based Multiplexed Targeted Assays.

Jae Choi, Devin K Schweppe, Steven P Gygi, 2018, Journal of proteome research.

Combining native and ‘omics’ mass spectrometry to identify endogenous ligands bound to membrane proteins

C. Robinson, D. Lane, G. McAlister, 2020, Nature Methods.

Real-Time Library Search Increases Cross-Link Identification Depth across All Levels of Sample Complexity

R. Huguet, R. Viner, D. B. Lima, 2022, bioRxiv.

MALDI produced ions inspected with a linear ion trap-orbitrap hybrid mass analyzer

S. Horning, R. Viner, G. Stafford, 2009 .

Proteomic Quantification and Site-Mapping of S-Nitrosylated Proteins Using Isobaric iodoTMT Reagents

Jiankun Cui, Jianlin Cheng, D. Lubahn, 2014, Journal of proteome research.

Expanding the Depth and Sensitivity of Cross-Link Identification by Differential Ion Mobility Using High-Field Asymmetric Waveform Ion Mobility Spectrometry

R. Viner, C. Frese, Fan Liu, 2020 .

Proteomic Profiling of IgG1 Producing CHO Cells Using LC/LC-SPS-MS3: The Effects of Bioprocessing Conditions on Productivity and Product Quality

B. Karger, J. Bones, R. Viner, 2021, Frontiers in Bioengineering and Biotechnology.

Developing a Multiplexed Quantitative Cross-Linking Mass Spectrometry Platform for Comparative Structural Analysis of Protein Complexes.

Lan Huang, Rosa Viner, Lan Huang, 2016, Analytical chemistry.

Evaluation and Optimization of High-Field Asymmetric Waveform Ion Mobility Spectrometry for Multiplexed Quantitative Site-specific N-glycoproteomics

K. Pan, H. Urlaub, Yanlong Ji, 2021, bioRxiv.

A Membrane‐Permeable and Immobilized Metal Affinity Chromatography (IMAC) Enrichable Cross‐Linking Reagent to Advance In Vivo Cross‐Linking Mass Spectrometry

A. Diehl, Ryan D. Bomgarden, R. Viner, 2021, Angewandte Chemie.

Evaluation of Advanced Precursor Determination for Tandem Mass Tag (TMT)-Based Quantitative Proteomics across Instrument Platforms.

S. Carr, Susan Klaeger, K. Clauser, 2018, Journal of Proteome Research.

A simple cellulose column procedure for selective enrichment of glycopeptides and characterization by nano LC coupled with electron-transfer and high-energy collisional-dissociation tandem mass spectrometry.

Edward D Bodnar, H. Perreault, R. Viner, 2010, Carbohydrate research.

Production and characterization of an AAV1-VP3-only capsid: An analytical benchmark standard

Ke Ma, R. McKenna, M. Mietzsch, 2023, Molecular therapy. Methods & clinical development.

Optimized TMT-Based Quantitative Cross-Linking Mass Spectrometry Strategy for Large-Scale Interactomic Studies.

R. Viner, Diogo Borges Lima, Fan Liu, 2022, Analytical chemistry.

Mapping the architecture of the initiating phosphoglycosyl transferase from S. enterica O-antigen biosynthesis in a liponanoparticle

B. Imperiali, G. Dodge, R. Viner, 2023, bioRxiv.

Kinase Inhibitor Profi ling of TrkA-and TrkB-Expressing Neuroblastoma Cell Lines Using Desthiobiotin Nucleotide Probes

M. Rosenblatt, Ryan D. Bomgarden, R. Viner, 2011 .

Added Value of Internal Fragments for Top-Down Mass Spectrometry of Intact Monoclonal Antibodies and Antibody-Drug Conjugates.

Iain D G Campuzano, Iain D. G. Campuzano, J. Loo, 2023, Analytical chemistry.

Automating data analysis for hydrogen/deuterium exchange mass spectrometry using data-independent acquisition methodology

J. Tainer, S. Lees-Miller, D. Schriemer, 2023, bioRxiv.

Interlaboratory Study on Differential Analysis of Protein Glycosylation by Mass Spectrometry: The ABRF Glycoprotein Research Multi-Institutional Study 2012*

Carthene R. Bazemore-Walker, Paula J. Griffin, H. Desaire, 2013, Molecular & Cellular Proteomics.

Exploring alternative proteases and fragmentation methods for proteomics

Kiyoko F. Aoki-Kinoshita, Monika S. Doblin, Kristina L. Ford, 2022 .

Sensitive and Accurate Quantitation of Phosphopeptides Using TMT Isobaric Labeling Technique.

Ryan D. Bomgarden, R. Viner, A. Robitaille, 2017, Journal of proteome research.

Complete Molecular Weight Profiling of Low-Molecular Weight Heparins Using Size Exclusion Chromatography-Ion Suppressor-High-Resolution Mass Spectrometry.

Joseph Zaia, Joshua Klein, Rosa Viner, 2016, Analytical chemistry.