Chengjian Tu

发表

Depletion of abundant plasma proteins and limitations of plasma proteomics.

Kristin L Cheek, R. Slebos, D. Liebler, 2010, Journal of proteome research.

Combinatorial peptide ligand library treatment followed by a dual-enzyme, dual-activation approach on a nanoflow liquid chromatography/orbitrap/electron transfer dissociation system for comprehensive analysis of swine plasma proteome.

J. Canty, M. Halfon, Brian J. Page, 2011, Analytical chemistry.

Large-scale, ion-current-based proteomics investigation of bronchoalveolar lavage fluid in chronic obstructive pulmonary disease patients.

Q. Hu, Jianmin Wang, S. Sethi, 2014, Journal of proteome research.

Quantitative proteomic profiling of paired cancerous and normal colon epithelial cells isolated freshly from colorectal cancer patients

L. Nie, R. Straubinger, Chengjian Tu, 2017, Proteomics. Clinical applications.

An IonStar Experimental Strategy for MS1 Ion Current-Based Quantification Using Ultrahigh-Field Orbitrap: Reproducible, In-Depth, and Accurate Protein Measurement in Large Cohorts.

Q. Hu, Chengjian Tu, Jun Li, 2017, Journal of proteome research.

Intrinsically Disordered Proteins as Important Players during Desiccation Stress of Soybean Radicles.

V. Uversky, Hua Cheng, Xiaoying Shi, 2017, Journal of proteome research.

Proteomic Network Analysis of Bronchoalveolar Lavage Fluid in Ex-Smokers to Discover Implicated Protein Targets and Novel Drug Treatments for Chronic Obstructive Pulmonary Disease

R. Samudrala, G. Broderick, S. Sethi, 2022, Pharmaceuticals.

Comparative Characterization of Osteoclasts Derived From Murine Bone Marrow Macrophages and RAW 264.7 Cells Using Quantitative Proteomics

Ding Xu, M. Oursler, Shuying Yang, 2018, JBMR plus.

Surfactant Cocktail-Aided Extraction/Precipitation/On-Pellet Digestion Strategy Enables Efficient and Reproducible Sample Preparation for Large-Scale Quantitative Proteomics.

M. Zand, Chengjian Tu, Jun Li, 2018, Analytical chemistry.

Highly Multiplexed and Reproducible Ion-Current-Based Strategy for Large-Scale Quantitative Proteomics and the Application to Protein Expression Dynamics Induced by Methylprednisolone in 60 Rats

D. DuBois, R. Almon, W. Jusko, 2014, Analytical chemistry.

Trypanosoma brucei PRMT1 Is a Nucleic Acid Binding Protein with a Role in Energy Metabolism and the Starvation Stress Response

E. Debler, Chengjian Tu, K. Paul, 2018, mBio.

Evidence of allosteric coupling between substrate binding and Adx recognition in the vitamin-D carbon-24 hydroxylase CYP24A1.

Chengjian Tu, D. F. Estrada, P. R. Wilderman, 2020, Biochemistry.

Dynamics of Zebrafish Heart Regeneration Using an HPLC-ESI-MS/MS Approach.

Y. Shyr, Yan Guo, Q. Sheng, 2018, Journal of proteome research.

Identification of Potential Megalin/Cubilin Substrates Using Extensive Proteomics Quantification from Kidney Megalin-Knockdown Mice

M. Morris, Chengjian Tu, J. Qu, 2022, The AAPS Journal.

An ion-current-based, comprehensive and reproducible proteomic strategy for comparative characterization of the cellular responses to novel anti-cancer agents in a prostate cell model.

Chengjian Tu, Jun Li, D. Hangauer, 2012, Journal of proteomics.

Proteomic Analysis of Charcoal-Stripped Fetal Bovine Serum Reveals Changes in the Insulin-like Growth Factor Signaling Pathway.

Michael V. Fiandalo, Yue Wu, J. Mohler, 2018, Journal of proteome research.

Mapping dynamic histone modification patterns during arsenic‐induced malignant transformation of human bladder cells

Jinqiu Zhu, Chengjian Tu, Xue Wang, 2018, Toxicology and applied pharmacology.

High-quality and robust protein quantification in large clinical/pharmaceutical cohorts with IonStar proteomics investigation

Chengjian Tu, Xue Wang, Miao Qu, 2022, Nature Protocols.

Comparative Proteomics Analysis of Exosomes Identifies Key Pathways and Protein Markers Related to Breast Cancer Metastasis

C. Frangou, Jianmin Zhang, Chengjian Tu, 2023, International journal of molecular sciences.

Proteomic Network Analysis of Bronchoalveolar Lavage Fluid in Ex-Smokers to Discover Implicated Protein Targets and Novel Drug Treatments for Chronic Obstructive Pulmonary Disease

R. Samudrala, G. Broderick, S. Sethi, 2022, bioRxiv.

IonStar enables high-precision, low-missing-data proteomics quantification in large biological cohorts

Qiang Hu, Jun Li, Lei Nie, 2018, Proceedings of the National Academy of Sciences.

Tandem analysis of transcriptome and proteome changes after a single dose of corticosteroid: a systems approach to liver function in pharmacogenomics.

Debra C DuBois, Richard R Almon, William J Jusko, 2015, Omics : a journal of integrative biology.

Ion-current-based Proteomic Profiling of the Retina in a Rat Model of Smith-Lemli-Opitz Syndrome*

Chengjian Tu, Jun Li, Jun Qu, 2013, Molecular & Cellular Proteomics.

New Insights into the Disease Progression Control Mechanisms by Comparing Long-Term-Nonprogressors versus Normal-Progressors among HIV-1-Positive Patients Using an Ion Current-Based MS1 Proteomic Profiling.

B. Nair, S. Mahajan, S. Schwartz, 2015, Journal of proteome research.

Ion-Current-Based Temporal Proteomic Profiling of Influenza-A-Virus-Infected Mouse Lungs Revealed Underlying Mechanisms of Altered Integrity of the Lung Microvascular Barrier.

Xing Qiu, S. Ghaemmaghami, M. Zand, 2016, Journal of proteome research.

Ion Current-Based Proteomic Profiling for Understanding the Inhibitory Effect of Tumor Necrosis Factor Alpha on Myogenic Differentiation.

Chengjian Tu, Jun Li, D. Hangauer, 2016, Journal of proteome research.

Large-Scale, Ion-Current-Based Proteomic Investigation of the Rat Striatal Proteome in a Model of Short- and Long-Term Cocaine Withdrawal.

A. C. Thompson, R. Straubinger, Chengjian Tu, 2016, Journal of proteome research.

A Presurgical-Window Intervention Trial of Isothiocyanate-Rich Broccoli Sprout Extract in Patients with Breast Cancer.

S. Edge, Yuehua Wu, A. Hutson, 2022, Molecular nutrition & food research.

Regulator of G protein signaling 12 enhances osteoclastogenesis by suppressing Nrf2-dependent antioxidant proteins to promote the generation of reactive oxygen species

Ziqing Li, A. Ng, C. Fu, 2019, eLife.

Optimization of Search Engines and Postprocessing Approaches to Maximize Peptide and Protein Identification for High-Resolution Mass Data.

Quanhu Sheng, Yu Shyr, Chengjian Tu, 2015, Journal of proteome research.

Characterization and Proteomic-Transcriptomic Investigation of Monocarboxylate Transporter 6 Knockout Mice: Evidence of a Potential Role in Glucose and Lipid Metabolism

M. Morris, Chengjian Tu, Ming Zhang, 2019, Molecular Pharmacology.

Improving retinal mitochondrial function as a treatment for age-related macular degeneration

D. Ferrington, Chengjian Tu, S. Montezuma, 2020, Redox biology.

ICan: An Optimized Ion-Current-Based Quantification Procedure with Enhanced Quantitative Accuracy and Sensitivity in Biomarker Discovery

Quanhu Sheng, Yu Shyr, Jun Li, 2014, Journal of proteome research.

Systematic Assessment of Survey Scan and MS2-Based Abundance Strategies for Label-Free Quantitative Proteomics Using High-Resolution MS Data

Quanhu Sheng, Jun Li, Chengjian Tu, 2014, Journal of proteome research.

Proteomic profiling of the retinas in a neonatal rat model of oxygen-induced retinopathy with a reproducible ion-current-based MS1 approach.

Jun Li, Lianshui Wang, Chengjian Tu, 2015, Journal of proteome research.

Rgs12 enhances osteoclastogenesis by suppressing Nrf2 activity and promoting the formation of reactive oxygen species

Ziqing Li, M. Oursler, Shuying Yang, 2018, bioRxiv.

Regulator of G protein signaling 12 enhances osteoclastogenesis by suppressing Nrf 2-dependent antioxidant proteins to promote the generation of reactive oxygen species

Ziqing Li, A. Ng, C. Fu, 2019 .

A peptide-retrieval strategy enables significant improvement of quantitative performance without compromising confidence of identification.

Quanhu Sheng, Yu Shyr, Chengjian Tu, 2017, Journal of proteomics.

Performance Investigation of Proteomic Identification by HCD/CID Fragmentations in Combination with High/Low-Resolution Detectors on a Tribrid, High-Field Orbitrap Instrument

Quanhu Sheng, Yu Shyr, Jun Qu, 2016, PloS one.