J. Daly

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Genome sequence and comparative microarray analysis of serotype M18 group A Streptococcus strains associated with acute rheumatic fever outbreaks

Todd M. Smith, J. V. Van Gompel, J. Musser, 2002, Proceedings of the National Academy of Sciences of the United States of America.

Economic Analysis of Rapid and Sensitive Polymerase Chain Reaction Testing in the Emergency Department for Influenza Infections in Children

R. Nelson, A. Blaschke, J. Daly, 2015, The Pediatric infectious disease journal.

Multicenter Evaluation of the Portrait Staph ID/R Blood Culture Panel for Rapid Identification of Staphylococci and Detection of the mecA Gene

N. Ledeboer, S. Young, J. Daly, 2017, Journal of Clinical Microbiology.

Automated collection of pathogen-specific diagnostic data for real-time syndromic epidemiological studies

Kirk M. Ririe, B. Malin, B. Althouse, 2017, bioRxiv.

Association of 2009 Pandemic Influenza A (H1N1) Infection and Increased Hospitalization With Parapneumonic Empyema in Children in Utah

C. Byington, Seemalata Jain, A. Blaschke, 2010, The Pediatric infectious disease journal.

Rapid Detection of Shiga Toxin-Producing Escherichia coli by Optical Immunoassay

J. Daly, Choong H. Park, L. Teel, 2007, Journal of Clinical Microbiology.

Tularemia with vesicular skin lesions may be mistaken for infection with herpes viruses.

C. Byington, J. Bender, J. Christenson, 2008, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

Comparison of Sorbitol MacConkey Agar and a Two-Step Method Which Utilizes Enzyme-Linked Immunosorbent Assay Toxin Testing and a Chromogenic Agar To Detect and Isolate EnterohemorrhagicEscherichia coli

K. Carroll, J. Daly, T. Novicki, 2000, Journal of Clinical Microbiology.

Temporal association of the appearance of mucoid strains of Streptococcus pyogenes with a continuing high incidence of rheumatic fever in Utah.

E. Kaplan, J. Bale, J. Musser, 2004, Pediatrics.

Resurgence of acute rheumatic fever in the intermountain area of the United States.

L. G. Veasy, S. Roth, H. Hill, 1987, The New England journal of medicine.

Automated Real-Time Collection of Pathogen-Specific Diagnostic Data: Syndromic Infectious Disease Epidemiology

Kirk M. Ririe, B. Malin, B. Althouse, 2018, JMIR public health and surveillance.

Invasive Haemophilus influenzae disease in Utah children: an 11-year population-based study in the era of conjugate vaccine.

Rosemary C. She, J. Bender, R. She, 2010, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

An epidemiological investigation of a sustained high rate of pediatric parapneumonic empyema: risk factors and microbiological associations.

C. Byington, M. Samore, S. Kaplan, 2002, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

Evaluation of the Wayson variation of a methylene blue staining procedure for the detection of microorganisms in cerebrospinal fluid

W. Gooch, J. Daly, J. Matsen, 1985, Journal of clinical microbiology.

Non-invasive sample collection for respiratory virus testing by multiplex PCR

Mandy A. Allison, B. LaFleur, C. Byington, 2011, Journal of Clinical Virology.

Use of rapid, nonradioactive DNA probes in culture confirmation tests to detect Streptococcus agalactiae, Haemophilus influenzae, and Enterococcus spp. from pediatric patients with significant infections

W. Gooch, J. Daly, N. Clifton, 1991, Journal of clinical microbiology.

Molecular Analysis of Group A Streptococcus Type emm18 Isolates Temporally Associated with Acute Rheumatic Fever Outbreaks in Salt Lake City, Utah

J. Musser, L. G. Veasy, E. Korgenski, 2002, Journal of Clinical Microbiology.

Molecular characterization of Streptococcus pyogenes isolates collected during periods of increased acute rheumatic fever activity in Utah

J. Bale, L. G. Veasy, E. Korgenski, 2004, The Pediatric infectious disease journal.

Molecular Analysis Improves Pathogen Identification and Epidemiologic Study of Pediatric Parapneumonic Empyema

C. Byington, X. Sheng, A. Blaschke, 2011, The Pediatric infectious disease journal.

The Changing Epidemiology of Invasive Pneumococcal Disease at a Tertiary Children's Hospital Through the 7-valent Pneumococcal Conjugate Vaccine Era: A Case for Continuous Surveillance

C. Byington, A. Blaschke, E. Mason, 2012, The Pediatric infectious disease journal.

The effect of rapid respiratory viral diagnostic testing on antibiotic use in a children's hospital.

C. Byington, J. Christenson, J. Daly, 2002, Archives of pediatrics & adolescent medicine.

in Utah 2007 Pneumococcal Empyema from 2001 to Molecular Epidemiology of Pediatric

C. Byington, A. Blaschke, K. Hulten, 2013 .

Evolution of the Epidemiology of Pneumococcal Disease Among Utah Children Through the Vaccine Era

C. Byington, A. Blaschke, H. Weng, 2011, The Pediatric infectious disease journal.

Invasive Pneumococcal Disease in Children: Changing Serotypes and Clinical Expression of Disease

M. Samore, J. Daly, 2010 .

Molecular Epidemiology of Pediatric Pneumococcal Empyema from 2001 to 2007 in Utah

C. Byington, X. Sheng, A. Blaschke, 2009, Journal of Clinical Microbiology.

Pneumococcal necrotizing pneumonia in Utah: does serotype matter?

C. Byington, E. Mason, J. Bender, 2006, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

Reply to Calbo and Garau

C. Byington, M. Samore, J. Daly, 2005 .

Enterovirus D68 outbreak detection through a syndromic disease epidemiology network.

B. Althouse, C. Ginocchio, K. St. George, 2020, Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology.

Clinical and Molecular Epidemiology of Invasive Haemophilus influenzae Serotype a Infections in Utah Children.

A. Blaschke, E. Korgenski, J. Daly, 2019, Journal of the Pediatric Infectious Diseases Society.

The Changing Epidemiology of Invasive Pneumococcal Disease at a Tertiary Children ’ s Hospital through the PCV 7 Era

C. Byington, A. Blaschke, J. Daly, 2013 .

Haemophilus ducreyi

J. Daly, 1985, Infection Control.

How well does physician selection of microbiologic tests identify Clostridium difficile and other pathogens in paediatric diarrhoea? Insights using multiplex PCR-based detection.

E. Korgenski, M. Vaughn, J. Daly, 2015, Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.

Invasive Pneumococcal Disease in Infants Younger Than 90 Days Before and After Introduction of PCV7

C. Byington, E. Mason, J. Daly, 2013, Pediatrics.

Invasive Pneumococcal Disease in Infants Younger Than 90 Days Before and After Introduction of PCV 7 WHAT

E. Mason, J. Daly, 2013 .

Influenza Virus Infection in Infants Less Than Three Months of Age

C. Byington, R. Srivastava, P. Gesteland, 2009, The Pediatric infectious disease journal.

Evaluation of the FilmArray® Respiratory Panel for Clinical Use in a Large Children's Hospital

J. Daly, M. Couturier, D. Hillyard, 2013, Journal of clinical laboratory analysis.

Clindamycin-resistant group B Streptococcus and failure of intrapartum prophylaxis to prevent early-onset disease.

C. Byington, L. Savitz, A. Blaschke, 2010, The Journal of pediatrics.

Serious bacterial infections in febrile infants younger than 90 days of age: the importance of ampicillin-resistant pathogens.

Tiffany S. Glasgow, C. Byington, J. Daly, 2003, Pediatrics.

Clinical Evaluation and Cost Analysis of Great Basin Shiga Toxin Direct Molecular Assay for Detection of Shiga Toxin-Producing Escherichia coli in Diarrheal Stool Specimens

N. Ledeboer, P. Granato, J. Dien Bard, 2016, Journal of Clinical Microbiology.

A large scale clinical evaluation of the AmpliVue and Illumigene molecular tests for the identification of Clostridium difficile-associated diarrhea in adult and pediatric patients.

J. Daly, A. Leber, W. Greene, 2015, Diagnostic microbiology and infectious disease.

Multicenter Clinical Evaluation of the Portrait Toxigenic C. difficile Assay for Detection of Toxigenic Clostridium difficile Strains in Clinical Stool Specimens

S. Kehl, L. Peterson, N. Ledeboer, 2012, Journal of Clinical Microbiology.

Evaluation of rapid, commercial latex techniques for serogrouping beta-hemolytic streptococci

J. Daly, K. Seskin, 1988, Journal of clinical microbiology.

blood culture panel for the rapid 1 identification of Staphylococci and detection of mecA gene 2 3

N. Ledeboer, S. Young, J. Daly, 2017 .

Increasing Incidence of Invasive Haemophilus influenzae Disease in Adults, Utah, USA

K. Hanson, H. Weng, J. Bender, 2011, Emerging infectious diseases.

FilmArray, an Automated Nested Multiplex PCR System for Multi-Pathogen Detection: Development and Application to Respiratory Tract Infection

Carrie L. Byington, Kirk M. Ririe, C. Byington, 2011, PloS one.

A multicenter evaluation of viral bloodstream detections in children presenting to the Emergency Department with suspected systemic infection

K. Chapin, R. Selvarangan, A. Blaschke, 2021, BMC Pediatrics.

Rhinovirus in Febrile Infants and Risk of Bacterial Infection

C. Byington, A. Presson, J. Wilkes, 2018, Pediatrics.

Resurgence of group A streptococcal disease: Rheumatic fever

J. Daly, 1989 .

Rapid Detection of Campylobacter jejuniin Stool Specimens by an Enzyme Immunoassay and Surveillance forCampylobacter upsaliensis in the Greater Salt Lake City Area

K. Carroll, M. Hindiyeh, J. Daly, 2000, Journal of Clinical Microbiology.

Retrospective Evaluation of Infants Aged 1 to 60 Days with Residual Cerebrospinal Fluid (CSF) Tested Using the FilmArray Meningitis/Encephalitis (ME) Panel

A. Blaschke, J. Dien Bard, E. Korgenski, 2018, Journal of Clinical Microbiology.

Retrospective Evaluation of Infants Aged 1-60 Days With Residual CSF Tested Using 1 the FilmArray ® Meningitis/Encephalitis (ME) Panel

A. Blaschke, J. D. Bard, E. Korgenski, 2018 .

Gonococci with mutations to low-level penicillin resistance exhibit increased sensitivity to the oxygen-independent bactericidal activity of human polymorphonuclear leukocyte granule extracts

J. Daly, P. Sparling, T. J. Lee, 1982, Infection and immunity.

Correction: FilmArray, an Automated Nested Multiplex PCR System for Multi-Pathogen Detection: Development and Application to Respiratory Tract Infection

Kirk M. Ririe, C. Byington, D. Teng, 2011, PLOS ONE.

Invasive Pneumococcal Disease in Infants Younger

C. Byington, E. Mason, J. Daly, 2013 .

Epidemiology of Streptococcus pneumoniae-Induced Hemolytic Uremic Syndrome in Utah Children

C. Byington, E. Mason, J. Bender, 2010, The Pediatric infectious disease journal.

Lack of correlation between streptococcal Fc receptors and symptomatic pharyngitis.

P. Fisher, W. Gooch, J. Daly, 1986, Diagnostic microbiology and infectious disease.

Gordonia species: emerging pathogens in pediatric patients that are identified by 16S ribosomal RNA gene sequencing.

C. Byington, A. Blaschke, J. Bender, 2007, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

Differential primary plating medium for enhancement of pigment production by Pseudomonas aeruginosa

J. Daly, J. Matsen, R. Boshard, 1984, Journal of clinical microbiology.

Adenoviral infections in children: the impact of rapid diagnosis.

C. Byington, J. Daly, Andrew T Pavia, 2004, Pediatrics.

Evaluation of the FilmArray Blood Culture Identification Panel: Results of a Multicenter Controlled Trial

K. Carroll, M. Loeffelholz, P. Schreckenberger, 2016, Journal of Clinical Microbiology.

Costs and Infant Outcomes After Implementation of a Care Process Model for Febrile Infants

Lucy Savitz, Xiaoming Sheng, Kent Korgenski, 2012, Pediatrics.

Multicenter Evaluation of BioFire FilmArray Respiratory Panel 2 for Detection of Viruses and Bacteria in Nasopharyngeal Swab Samples

P. Schreckenberger, J. Daly, A. Harrington, 2018, Journal of Clinical Microbiology.

Multicenter Evaluation of BioFire FilmArray Meningitis/Encephalitis Panel for Detection of Bacteria, Viruses, and Yeast in Cerebrospinal Fluid Specimens

K. Carroll, K. Chapin, J. Mestas, 2016, Journal of Clinical Microbiology.

Extended-spectrum beta-lactamase-producing pathogens in a children's hospital: a 5-year experience.

B. LaFleur, C. Byington, A. Blaschke, 2009, American journal of infection control.

Impact of the Pneumococcal Conjugate Vaccine on Pneumococcal Parapneumonic Empyema

Andrew Pavia, Kent Korgenski, Carrie L. Byington, 2006, The Pediatric infectious disease journal.

322. Evaluation of the BioFire® Bone and Joint Infection (BJI) Panel for the Detection of Microorganisms and Antimicrobial Resistance Genes in Synovial Fluid Specimens

T. Bauer, J. Mestas, S. Butler-Wu, 2020 .

Preclinical Assessment of a Fully Automated Multiplex PCR Panel for Detection of Central Nervous System Pathogens

K. Hanson, A. Blaschke, J. Daly, 2015, Journal of Clinical Microbiology.

Use of quantitative 16S rRNA PCR to determine bacterial load does not augment conventional cerebrospinal fluid (CSF) cultures among children undergoing treatment for CSF shunt infection.

B. van Yserloo, A. Blaschke, D. Gillespie, 2014, Diagnostic microbiology and infectious disease.

Changing Trends in Parapneumonic Empyema (PPE) in the United States during the Pneumococcal Conjugate Vaccines Era

C. Byington, A. Blaschke, E. Korgenski, 2015 .

Temporal trends of invasive disease due to Streptococcus pneumoniae among children in the intermountain west: emergence of nonvaccine serogroups.

C. Byington, G. Stoddard, M. Samore, 2005, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

Incidence, Morbidity, and Costs of Human Metapneumovirus Infection in Hospitalized Children.

C. Byington, A. Blaschke, J. Daly, 2016, Journal of the Pediatric Infectious Diseases Society.

Evaluation of the Strep-A-Chek technique for presumptive identification of group A beta-hemolytic streptococci and group D enterococci.

J. Daly, M. Rufener, Michelle L. Rufener, 1987, Diagnostic microbiology and infectious disease.

Multicenter Evaluation of the Solana Group A Streptococcus Assay: Comparison with Culture

N. Ledeboer, P. Granato, J. Daly, 2016, Journal of Clinical Microbiology.

Rapid identification of pathogens from positive blood cultures by multiplex polymerase chain reaction using the FilmArray system.

Kirk M. Ririe, C. Byington, K. Ririe, 2012, Diagnostic microbiology and infectious disease.

Antimicrobial susceptibility of clinical isolates of Haemophilus influenzae to ampicillin-sulbactam.

M. Larocco, C. Inderlied, J. Daly, 1990, Diagnostic microbiology and infectious disease.

Informing the Front Line about Common Respiratory Viral Epidemics

Matthew H. Samore, Brent C. James, Rajendu Srivastava, 2007, AMIA.

Rapid detection of Streptococcus pyogenes in pediatric patient specimens by DNA probe

E. Korgenski, J. Daly, L. Steed, 1993, Journal of clinical microbiology.

Evolving epidemiologic characteristics of invasive group a streptococcal disease in Utah, 2002-2010.

C. Byington, A. Blaschke, H. Hill, 2012, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

Detection of 23 Gastrointestinal Pathogens Among Children Who Present With Diarrhea

E. Korgenski, M. Vaughn, J. Daly, 2016, Journal of the Pediatric Infectious Diseases Society.

Seasonal Invasive Pneumococcal Disease in Children: Role of Preceding Respiratory Viral Infection

C. Byington, X. Sheng, J. Bender, 2008, Pediatrics.

Evaluation of the BIOMIC Video Reader System for Determining Interpretive Categories of Isolates on the Basis of Disk Diffusion Susceptibility Results

E K Korgenski, J A Daly, E. Korgenski, 1998, Journal of Clinical Microbiology.

Surveillance and detection of erythromycin resistance in Bordetella pertussis isolates recovered from a pediatric population in the Intermountain West region of the United States

E. Korgenski, J. Daly, J. A. Daly, 1997, Journal of clinical microbiology.

Duration of Bordetella pertussis Polymerase Chain Reaction Positivity in Confirmed Pertussis Illness.

R. Srivastava, J. Daly, B. Stone, 2014, Journal of the Pediatric Infectious Diseases Society.

Epidemiology, Complications, and Cost of Hospitalization in Children With Laboratory-Confirmed Influenza Infection

C. Byington, R. Srivastava, P. Gesteland, 2006, Pediatrics.

Clinical and molecular epidemiology of invasive Staphylococcus aureus infection in Utah children; continued dominance of MSSA over MRSA

M. Yandell, A. Blaschke, K. Hulten, 2020, PloS one.

Detection of Group A Streptococcus in Pharyngeal Swab Specimens by Use of the AmpliVue GAS Isothermal Helicase-Dependent Amplification Assay

P. Pancholi, N. Ledeboer, P. Granato, 2015, Journal of Clinical Microbiology.

Rapid Identification of Pathogens from Positive Blood Cultures by Multiplex PCR using the FilmArray System

Kirk M. Ririe, C. Byington, K. Ririe, 2012 .

Optical immunoassay for streptococcal pharyngitis: evaluation of accuracy with routine and mucoid strains associated with acute rheumatic fever outbreak in the intermountain area of the United States

E. Korgenski, J. Daly, E. Llausás-Magaña, 1994, Journal of clinical microbiology.

In vitro activity of meropenem, imipenem, cefepime and ceftazidime against Pseudomonas aeruginosa isolates from cystic fibrosis patients.

J. Christenson, E. Korgenski, J. Daly, 2000, The Journal of antimicrobial chemotherapy.

A comparison of Thermo Electron RSV OIA to viral culture and direct fluorescent assay testing for respiratory syncytial virus.

J. Daly, W. Aldous, E. W. Taggart, 2005, Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology.

1 Multicenter Evaluation of the BioFire FilmArray Respiratory Panel 2 for the Detection of 2 Viruses and Bacteria in Nasopharyngeal Swab Samples 3

J. Daly, A. Harrington, B. Kensinger, 2018 .

Description of a multiplex Bordetella pertussis and Bordetella parapertussis LightCycler PCR assay with inhibition control.

Ann Croft, Karen C Carroll, K. Carroll, 2003, Diagnostic microbiology and infectious disease.

A comparison of Binax NOW to viral culture and direct fluorescent assay testing for respiratory syncytial virus.

J. Daly, W. Aldous, E. W. Taggart, 2004, Diagnostic microbiology and infectious disease.

Pneumococcal necrotizing pneumonia in Utah: Does serotype matter? (Clinical Infectious Disease (May 1, 2008) 46 (1346-1352))

C. Byington, E. Mason, E. Korgenski, 2008 .

Multicenter Evaluation of the BIOFIRE Blood Culture Identification 2 Panel for Detection of Bacteria, Yeasts, and Antimicrobial Resistance Genes in Positive Blood Culture Samples

Rosemary C. She, V. Sambri, R. She, 2023, Journal of clinical microbiology.

Multicenter Evaluation of BioFire FilmArray Respiratory Panel 2 for Detection of Viruses and Bacteria in Nasopharyngeal Swab Samples

P. Schreckenberger, J. Daly, A. Harrington, 2018, Journal of Clinical Microbiology.

Continued early onset group B streptococcal infections in the era of intrapartum prophylaxis

C. Byington, G. Stoddard, J. Daly, 2009, Journal of Perinatology.

Clinical Impact of Multiplex Molecular Diagnostic Testing in Children with Acute Gastroenteritis Presenting to An Emergency Department: A Multicenter Prospective Study

K. Chapin, R. Selvarangan, D. Leung, 2023, medRxiv.

Rhinovirus in Febrile Infants and Risk of Bacterial Infection

C. Byington, A. Presson, A. Blaschke, 2018, Pediatrics.

Influenza Virus Infection in Infants Less Than Three Months of Age

C. Byington, R. Srivastava, P. Gesteland, 2009, The Pediatric infectious disease journal.