W. Klimke

发表

Towards Viral Genome Annotation Standards, Report from the 2010 NCBI Annotation Workshop

Q. Zeng, T. Tatusova, R. Scheuermann, 2010, Viruses.

Solving the Problem: Genome Annotation Standards before the Data Deluge

T. Tatusova, K. Pruitt, C. O’Donovan, 2011, Standards in genomic sciences.

The COMBREX Project: Design, Methodology, and Initial Results

Michael Y. Galperin, S. Salzberg, R. Greiner, 2013, PLoS biology.

Toward an online repository of Standard Operating Procedures (SOPs) for (meta)genomic annotation.

Samuel V. Angiuoli, G. Cochrane, T. Tatusova, 2008, Omics : a journal of integrative biology.

Meeting report: GenBank microbial genomic taxonomy workshop (12–13 May, 2015)

Heike Sichtig, Rita R. Colwell, George M. Garrity, 2016, Standards in Genomic Sciences.

F factor conjugation is a true type IV secretion system.

L. Frost, T. Lawley, W. Klimke, 2003, FEMS microbiology letters.

Benchmark datasets for phylogenomic pipeline validation, applications for foodborne pathogen surveillance

Ruth E. Timme, Richa Agarwala, Lee S. Katz, 2017, PeerJ.

Towards a Library of Standard Operating Procedures (SOPs) for (meta)genomic annotation

Samuel V. Angiuoli, G. Cochrane, T. Tatusova, 2008 .

Tra Proteins Characteristic of F-Like Type IV Secretion Systems Constitute an Interaction Group by Yeast Two-Hybrid Analysis

L. Frost, W. Klimke, M., 2004 .

Curation of the AMRFinderPlus databases: applications, functionality and impact

D. Haft, A. Prasad, M. Feldgarden, 2022, Microbial genomics.

Database resources of the National Center for Biotechnology Information in 2023

Thomas L. Madden, Donald C. Comeau, Eneida L. Hatcher, 2022, Nucleic Acids Res..

Database resources of the National Center for Biotechnology Information

Evan Bolton, Mark Johnson, Rebecca Orris, 2017, Nucleic Acids Res..

Proposal for assignment of allele numbers for mobile colistin resistance (mcr) genes.

Jianzhong Shen, D. Haft, A. Prasad, 2018, The Journal of antimicrobial chemotherapy.

NCBI Reference Sequences: current status, policy and new initiatives

Tatiana A. Tatusova, Donna R. Maglott, Kim D. Pruitt, 2008, Nucleic Acids Res..

AMRFinderPlus and the Reference Gene Catalog facilitate examination of the genomic links among antimicrobial resistance, stress response, and virulence

D. Haft, G. Tyson, A. Prasad, 2021, Scientific Reports.

Validating the AMRFinder Tool and Resistance Gene Database by Using Antimicrobial Resistance Genotype-Phenotype Correlations in a Collection of Isolates

Shaohua Zhao, Douglas J. Slotta, Daniel H. Haft, 2019, Antimicrobial Agents and Chemotherapy.

Using the NCBI AMRFinder Tool to Determine Antimicrobial Resistance Genotype-Phenotype Correlations Within a Collection of NARMS Isolates

D. Haft, P. McDermott, G. Tyson, 2019, bioRxiv.

FDA-ARGOS is a database with public quality-controlled reference genomes for diagnostic use and regulatory science

Heike Sichtig, Jonathan E. Allen, Uwe Scherf, 2019, Nature Communications.

A Standard Numbering Scheme for Class C β-Lactamases

J. Frère, A. Oliver, D. Haft, 2019, Antimicrobial Agents and Chemotherapy.

Comparative Genomic Analyses of Seventeen Streptococcus pneumoniae Strains: Insights into the Pneumococcal Supragenome

Evan Powell, Stephen D. Bentley, Julian Parkhill, 2007, Journal of bacteriology.

The National Center for Biotechnology Information's Protein Clusters Database

Tatiana A. Tatusova, Richa Agarwala, Stacy Ciufo, 2008, Nucleic Acids Res..

A Standard Numbering Scheme for Class C (cid:2) -Lactamases

J. Frère, A. Oliver, D. Haft, 2021 .

Entry exclusion in F-like plasmids requires intact TraG in the donor that recognizes its cognate TraS in the recipient.

L. Frost, W. Klimke, J. Manchak, 2007, Microbiology.

The mating pair stabilization protein, TraN, of the F plasmid is an outer-membrane protein with two regions that are important for its function in conjugation.

L. Frost, W. Klimke, J. M. Rodriguez-Maillard, 2005, Microbiology.

Genetic Analysis of the Role of the Transfer Gene,traN, of the F and R100-1 Plasmids in Mating Pair Stabilization during Conjugation

L. Frost, W. Klimke, 1998, Journal of bacteriology.

FDA-ARGOS: A Public Quality-Controlled Genome Database Resource for Infectious Disease Sequencing Diagnostics and Regulatory Science Research

Heike Sichtig, Jonathan E. Allen, Tom Slezak, 2018, bioRxiv.

Analysis and characterization of the IncFV plasmid pED208 transfer region.

L. Frost, W. Klimke, R. Skurray, 2002, Plasmid.

Comparison of Proteins Involved in Pilus Synthesis and Mating Pair Stabilization from the Related Plasmids F and R100-1: Insights into the Mechanism of Conjugation

L. Frost, W. Klimke, J. Manchak, 1999, Journal of bacteriology.

Lessons learned in virulence factor identification and data management from a hackathon on microbial virulence

E. Holloway, Kumardeep Chaudhary, M. Feldgarden, 2022, F1000Research.

Implementation of Nationwide Real-time Whole-genome Sequencing to Enhance Listeriosis Outbreak Detection and Investigation.

Yi Chen, Ruth Timme, Marc Allard, 2016, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

Strains: Insights into the Pneumococcal Supragenome

Julian Parkhill, Garth D. Ehrlich, Justin S. Hogg, 2007 .

Comment on: Resistance gene naming and numbering: is it a new gene or not?

D. Haft, A. Prasad, R. Bonomo, 2016, The Journal of antimicrobial chemotherapy.

The Use of Whole-Genome Sequencing by the Federal Interagency Collaboration for Genomics for Food and Feed Safety in the United States.

R. Agarwala, B. Bruce, P. Gerner-Smidt, 2022, Journal of food protection.

Meeting report: GenBank microbial genomic taxonomy workshop (12–13 May, 2015)

R. Agarwala, T. Tatusova, T. Madden, 2016, Standards in Genomic Sciences.

Database resources of the National Center for Biotechnology Information

Thomas L. Madden, Donald C. Comeau, Evan E. Bolton, 2020, Nucleic Acids Res..

NCBI Reference Sequences: current status, policy and new initiatives

T. Tatusova, D. Maglott, K. Pruitt, 2008, Nucleic Acids Res..