Alun Jones

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PGTools: A Software Suite for Proteogenomic Data Analysis and Visualization.

Shivashankar H. Nagaraj, J. Pearson, N. Waddell, 2015, Journal of proteome research.

Characterisation of multiple Caribbean ciguatoxins and congeners in individual specimens of horse-eye jack (Caranx latus) by high-performance liquid chromatography/mass spectrometry.

R. Lewis, J. Vernoux, Alun Jones, 2002, Toxicon : official journal of the International Society on Toxinology.

Multiple ciguatoxins present in Indian Ocean reef fish.

R. Lewis, Alun Jones, B. Hamilton, 2002, Toxicon : official journal of the International Society on Toxinology.

Isolation and characterisation of Indian Ocean ciguatoxin.

R. Lewis, J. Vernoux, Alun Jones, 2002, Toxicon : official journal of the International Society on Toxinology.

Identification of slow and fast-acting toxins in a highly ciguatoxic barracuda (Sphyraena barracuda) by HPLC/MS and radiolabelled ligand binding.

R. Lewis, J. Vernoux, Alun Jones, 2003, Toxicon : official journal of the International Society on Toxinology.

Rapid extraction combined with LC-tandem mass spectrometry (CREM-LC/MS/MS) for the determination of ciguatoxins in ciguateric fish flesh.

R. Lewis, Alun Jones, Aijun Yang, 2009, Toxicon : official journal of the International Society on Toxinology.

Ciguatoxin Detection Methods and High‐Throughput Assays

I. Vetter, R. Lewis, Alun Jones, 2017 .

Optimized deep-targeted proteotranscriptomic profiling reveals unexplored Conus toxin diversity and novel cysteine frameworks

R. Taft, Ivon Harliwong, Alun Jones, 2015, Proceedings of the National Academy of Sciences.

Albumins and their processing machinery are hijacked for cyclic peptides in sunflower.

D. Craik, N. Daly, M. Colgrave, 2011, Nature chemical biology.

In situ neutralization in Boc-chemistry solid phase peptide synthesis. Rapid, high yield assembly of difficult sequences.

Stephen B. H. Kent, Paul F. Alewood, Alun Jones, 2009 .

Multiple Reaction Monitoring for the Accurate Quantification of Amino Acids: Using Hydroxyproline to Estimate Collagen Content.

M. Colgrave, Alun Jones, P. Allingham, 2019, Methods in molecular biology.

Multiple reaction monitoring for the accurate quantification of amino acids: using hydroxyproline to estimate collagen content.

M. Colgrave, Alun Jones, P. Allingham, 2012, Methods in molecular biology.

Hydroxyproline quantification for the estimation of collagen in tissue using multiple reaction monitoring mass spectrometry.

M. Colgrave, Alun Jones, P. Allingham, 2008, Journal of chromatography. A.

Adiponectin multimerization is dependent on conserved lysines in the collagenous domain: evidence for regulation of multimerization by alterations in posttranslational modifications.

J. Whitehead, J. Prins, Alun Jones, 2006, Molecular endocrinology.

Formation of mononuclear and chloro-bridged binuclear copper(II) complexes of patellamide D, a naturally occurring cyclic peptide: influence of anion and solvent.

D. Fairlie, L. Gahan, J. Tyndall, 2004, Journal of inorganic biochemistry.

crystal Structure and Electrospray Ionization Mass Spectrometry, Electron Paramagnetic Resonance, and Magnetic Susceptibility Study of [Cu2(ascidH2)(1,2-.mu.-CO3)(H2O)2].cntdot.2H2O, the Bis(copper(II)) Complex of Ascidiacyclamide (ascidH4), a Cyclic Peptide Isolated from the Ascidian Lissoclinum pa

D. Fairlie, C. Hawkins, L. Gahan, 1994 .

Solid phase synthesis of hydroxyethylamine peptide bond isosteres: Synthesis of the potent HIV-1 protease inhibitor JG365

S. Kent, Alun Jones, R. Brinkworth, 1992 .

Cyclic tetrapeptides via the ring contraction strategy: chemical techniques useful for their identification.

Douglas A. Horton, M. Smythe, Alun Jones, 2008, Organic & biomolecular chemistry.

Synthesis, structure elucidation, in vitro biological activity, toxicity, and Caco-2 cell permeability of lipophilic analogues of alpha-conotoxin MII.

D. Craik, David John Adams, R. Lewis, 2003, Journal of medicinal chemistry.

Ni2+-Based Immobilized Metal Ion Affinity Chromatography of Lactose Operon Repressor Protein from Escherichia Coli

T. Velkov, Alun Jones, M. L. Lim, 2008, Preparative biochemistry & biotechnology.

A sensitive LC/MS/MS assay of 25OH vitamin D3 and 25OH vitamin D2 in dried blood spots.

P. Mortensen, D. Hougaard, B. No̸rgaard-Pedersen, 2009, Clinica chimica acta; international journal of clinical chemistry.

α-Conotoxin EpI, a Novel Sulfated Peptide from Conus episcopatus That Selectively Targets Neuronal Nicotinic Acetylcholine Receptors*

David John Adams, R. Lewis, J. Cuevas, 1998, The Journal of Biological Chemistry.

Eukaryotic elongation factor 1 complex subunits are critical HIV-1 reverse transcription cofactors

D. Harrich, C. Abbott, Ann Apolloni, 2012, Proceedings of the National Academy of Sciences.

Urinary Biomarkers for Detection of Early and Advanced Chronic Kidney Disease - A Pilot Study

M. Cooper, W. Hoy, Alun Jones, 2015 .

Transcriptomic-Proteomic Correlation in the Predation-Evoked Venom of the Cone Snail, Conus imperialis

R. Lewis, Alun Jones, P. Alewood, 2019, Marine drugs.

Recombinant expression of Munc18c in a baculovirus system and interaction with syntaxin4.

D. James, Jennifer L. Martin, C. Gee, 2003, Protein expression and purification.

Mammalian farnesyltransferase α subunit regulates vacuolar protein sorting-associated protein 4A (Vps4A)--dependent intracellular trafficking through recycling endosomes.

Guillermo A. Gomez, K. Alexandrov, W. Johnston, 2015, Biochemical and biophysical research communications.

Quantitative analysis of backbone-cyclised peptides in plants.

Marilyn A. Anderson, D. Craik, M. Colgrave, 2008, Journal of chromatography. B, Analytical technologies in the biomedical and life sciences.

Mass landscapes of seven scorpion species: The first analyses of Australian species with 1,5-DAN matrix

Jennifer J. Smith, Alun Jones, P. Alewood, 2012, Journal of venom research.

Peptide quantification by matrix-assisted laser desorption ionisation time-of-flight mass spectrometry: investigations of the cyclotide kalata B1 in biological fluids.

D. Craik, M. Colgrave, Alun Jones, 2005, Journal of chromatography. A.

Optimizing the connectivity in disulfide-rich peptides: α-conotoxin SII as a case study

E. Moczydlowski, Alun Jones, J. Bingham, 2005 .

Deep Venomics Reveals the Mechanism for Expanded Peptide Diversity in Cone Snail Venom*

Q. Kaas, R. Lewis, Alun Jones, 2012, Molecular & Cellular Proteomics.

Remarkable inter- and intra-species complexity of conotoxins revealed by LC/MS

R. Lewis, Alun Jones, Jasmine L. Davis, 2009, Peptides.

Chemical and functional identification and characterization of novel sulfated alpha-conotoxins from the cone snail Conus anemone.

David John Adams, R. Lewis, A. Nicke, 2004, Journal of medicinal chemistry.

Differential proteomic analysis of bovine conceptus fluid proteins in pregnancies generated by assisted reproductive technologies

S. Lehnert, Alun Jones, M. Holland, 2008, Proteomics.

In situ neutralization in Boc chemistry SPPS: High yield assembly of difficult sequences

S. Kent, M. Schnölzer, Alun Jones, 1992 .

Binding of Copper(II) to the Cyclic Octapeptide Patellamide D

D. Fairlie, C. Hawkins, L. Gahan, 1994 .

A recombinant diheme SoxAX cytochrome – Implications for the relationship between EPR signals and modified heme‐ligands

A. McEwan, U. Kappler, Alun Jones, 2005, FEBS letters.

Exposed proteins of the Schistosoma japonicum tegument.

A. Loukas, D. McManus, Malcolm K. Jones, 2010, International journal for parasitology.

p-Cresol As a Reversible Acylium Ion Scavenger in Solid-Phase Peptide Synthesis

W. Meutermans, Alun Jones, P. Alewood, 1998 .

In Situ Neutralization in Boc-chemistry Solid Phase Peptide Synthesis

S. Kent, M. Schnölzer, Alun Jones, 2007, International Journal of Peptide Research and Therapeutics.

Microcin J25 has a threaded sidechain-to-backbone ring structure and not a head-to-tail cyclized backbone.

Ulf Göransson, Norelle L Daly, David J Craik, 2003, Journal of the American Chemical Society.

Combining Sense and Nonsense Codon Reassignment for Site-Selective Protein Modification with Unnatural Amino Acids.

Kirill Alexandrov, Alun Jones, Mark E. Polinkovsky, 2017, ACS synthetic biology.

Solution Structure, Membrane Interactions, and Protein Binding Partners of the Tetraspanin Sm-TSP-2, a Vaccine Antigen from the Human Blood Fluke Schistosoma mansoni*

A. Loukas, D. Craik, K. Rosengren, 2014, The Journal of Biological Chemistry.

Characterisation of inosine monophosphate dehydrogenase expression during retinal development: differences between variants and isoforms.

J. Whitehead, Alun Jones, N. Barnett, 2008, The international journal of biochemistry & cell biology.

Identification of immuno-reactive proteins from a sheep gastrointestinal nematode, Trichostrongylus colubriformis, using two-dimensional electrophoresis and mass spectrometry.

P. Hunt, K. Kongsuwan, Alun Jones, 2007, International journal for parasitology.

Flexibility versus Rigidity for Orally Bioavailable Cyclic Hexapeptides

Alun Jones, D. Fairlie, A. Lucke, 2015, Chembiochem : a European journal of chemical biology.

Class IIa Histone Deacetylases Drive Toll-like Receptor-Inducible Glycolysis and Macrophage Inflammatory Responses via Pyruvate Kinase M2.

M. Sweet, D. Fairlie, M. Hodson, 2020, Cell reports.

Discovering proteins for chemoprevention and chemotherapy by curcumin in liver fluke infection-induced bile duct cancer

T. Boonmars, C. Wongkham, C. Pairojkul, 2018, PloS one.

Single‐step protease cleavage elution for identification of protein–protein interactions from GST pull‐down and mass spectrometry

J. Stow, Alun Jones, Lin Luo, 2014, Proteomics.

The Weak Complex between RhoGAP Protein ARHGAP22 and Signal Regulatory Protein 14-3-3 Has 1∶2 Stoichiometry and a Single Peptide Binding Mode

D. James, Jennifer L. Martin, Alexander F. Rowland, 2012, PloS one.

The secreted and surface proteomes of the adult stage of the carcinogenic human liver fluke Opisthorchis viverrini

A. Loukas, P. Brindley, T. Laha, 2010, Proteomics.

A Granulin-Like Growth Factor Secreted by the Carcinogenic Liver Fluke, Opisthorchis viverrini, Promotes Proliferation of Host Cells

Jason Mulvenna, Alex Loukas, Alun Jones, 2009, PLoS pathogens.

Proteomic analysis of bovine conceptus fluids during early pregnancy

S. Lehnert, Alun Jones, M. Holland, 2008, Proteomics.

Investigation of the estuarine stonefish (Synanceia horrida) venom composition.

E. Undheim, Alun Jones, P. Alewood, 2019, Journal of proteomics.

Identification of a Novel Class of Nicotinic Receptor Antagonists

David John Adams, C. Schroeder, R. Lewis, 2006, Journal of Biological Chemistry.

Novel neutrophil-derived proteins in bronchoalveolar lavage fluid indicate an exaggerated inflammatory response in pediatric cystic fibrosis patients.

J. Carlin, J. Galati, D. Hume, 2007, Clinical chemistry.

A Novel Family of Chitin-binding Proteins from Insect Type 2 Peritrophic Matrix

R. Pearson, R. Tellam, Alun Jones, 2001, The Journal of Biological Chemistry.

Structural Changes in Cell-Wall and Cell-Membrane Organic Materials Following Exposure to Free Nitrous Acid.

Zhiguo Yuan, P. Bond, Jianhua Guo, 2020, Environmental science & technology.

Differential Protein Expression Marks the Transition From Infection With Opisthorchis viverrini to Cholangiocarcinoma*

C. Wongkham, C. Pairojkul, J. Mulvenna, 2017, Molecular & Cellular Proteomics.

Differential Protein Expression Marks the Transition From Infection With Opisthorchis viverrini to Cholangiocarcinoma*

C. Wongkham, C. Pairojkul, J. Mulvenna, 2016, Molecular & Cellular Proteomics.

Characterisation of individual N-and O-linked glycosylation sites using Edman degradation

N. Packer, A. Gooley, K. Williams, 1995 .

Elp2 mutations perturb the epitranscriptome and lead to a complex neurodevelopmental phenotype

Melissa J. Davis, M. Bodén, S. Hediyeh-zadeh, 2021, Nature Communications.

Enzymatic Cyclization of a Potent Bowman-Birk Protease Inhibitor, Sunflower Trypsin Inhibitor-1, and Solution Structure of an Acyclic Precursor Peptide*

D. Craik, L. Otvos, H. Schirra, 2003, Journal of Biological Chemistry.

Macrophage secretory products induce an inflammatory phenotype in hepatocytes.

M. Sweet, G. Thomas, Alun Jones, 2012, World journal of gastroenterology.

A novel strategy for the targeted analysis of protein and peptide metabolites

Sri H. Ramarathinam, A. Purcell, C. Hunter, 2009, Proteomics.

A defined α-helix in the bifunctional O-glycosylated natriuretic peptide TcNPa from the venom of Tropidechis carinatus.

Brendan L Wilkinson, R. Kini, R. Payne, 2015, Angewandte Chemie.

Challenges in mass spectrometry-based quantification of bioactive peptides: a case study exploring the neuropeptide Y family.

M. Colgrave, Alun Jones, Yaping Jin, 2012, Biopolymers.

Cloning, expression, purification and characterization of a DsbA-like protein from Wolbachia pipientis.

R. Glockshuber, Jennifer L. Martin, N. Cowieson, 2008, Protein expression and purification.

Elongator mutation in mice induces neurodegeneration and ataxia-like behavior

P. Sah, B. Whittle, J. Stow, 2018, Nature Communications.

A HIV-1 Tat mutant protein disrupts HIV-1 Rev function by targeting the DEAD-box RNA helicase DDX1

D. Harrich, K. Spann, F. Meunier, 2014, Retrovirology.

Cyclooligomerization of Thiazole-Containing Tetrapeptides. Symmetrical Macrocycles with up to 76 Amino Acids

D. Fairlie, M. Scanlon, L. Gahan, 1999 .

Identification of disulfide-containing chemical cross-links in proteins using MALDI-TOF/TOF-mass spectrometry.

D. Hume, T. Huber, I. Ross, 2008, Analytical chemistry.

In situ Neutralization in Boc‐Chemistry ‐ Solid Phase Peptide Synthesis.

Stephen B. H. Kent, Paul F. Alewood, Alun Jones, 1993 .

Dehydration converts DsbG crystal diffraction from low to high resolution.

M. A. Edeling, Jennifer L. Martin, S. Raina, 2003, Structure.

Determination of transport in the Caco-2 cell assay of compounds varying in lipophilicity using LC-MS: enhanced transport of Leu-enkephalin analogues.

Istvan Toth, Per Artursson, Alun Jones, 2002, European journal of pharmaceutical sciences : official journal of the European Federation for Pharmaceutical Sciences.

The structure of microcin J25 is a threaded sidechain-to-backbone ring structure and not a head-to-tail cyclized backbone

D. Craik, K. Rosengren, N. Daly, 2003 .

Characterization of a single glycosylated asparagine site on a glycopeptide using solid-phase Edman degradation

N. Packer, A. Gooley, K. Williams, 1994, Glycoconjugate Journal.

Isolation of the murine S100 protein MRP14 (14 kDa migration-inhibitory-factor-related protein) from activated spleen cells: characterization of post-translational modifications and zinc binding.

M. Raftery, C. Geczy, Alun Jones, 1996, The Biochemical journal.

PGTools: A Software Suite for Proteogenomic Data Analysis and Visualization.

Shivashankar H. Nagaraj, J. Pearson, N. Waddell, 2015, Journal of proteome research.