Clemens Wrzodek

发表

A Toxicogenomic Approach for the Prediction of Murine Hepatocarcinogenesis Using Ensemble Feature Selection

A. Zell, Virgile Richard, Johannes Eichner, 2013, PloS one.

Identification of Dlk1-Dio3 imprinted gene cluster noncoding RNAs as novel candidate biomarkers for liver tumor promotion.

A. Zell, P. Couttet, D. Schübeler, 2013, Toxicological sciences : an official journal of the Society of Toxicology.

TFpredict and SABINE: Sequence-Based Prediction of Structural and Functional Characteristics of Transcription Factors

A. Zell, D. Wanke, A. Dräger, 2013, PloS one.

Evaluation of Toxicogenomics Approaches for Assessing the Risk of Nongenotoxic Carcinogenicity in Rat Liver

A. Zell, H. Ellinger-Ziegelbauer, Michael Römer, 2014, PLoS ONE.

ZBIT Bioinformatics Toolbox: A Web-Platform for Systems Biology and Expression Data Analysis

A. Zell, A. Dräger, Michael Römer, 2016, PloS one.

Integrative Pathway-Based Approach for Genome-Wide Association Studies: Identification of New Pathways for Rheumatoid Arthritis and Type 1 Diabetes

A. Zell, T. Gasser, Manu Sharma, 2013, PloS one.

Linking the Epigenome to the Genome: Correlation of Different Features to DNA Methylation of CpG Islands

A. Zell, G. Hinselmann, Johannes Eichner, 2012, PloS one.

Documentation for CpG island feature generator

Clemens Wrzodek, 2012 .

JSBML: a flexible and entirely Java-based library for working with SBML

Andreas Zell, Nicolas Le Novère, Michael Hucka, 2011 .

Precise generation of systems biology models from KEGG pathways

Andreas Zell, Andreas Dräger, Manuel Ruff, 2013, BMC Systems Biology.

Path2Models: large-scale generation of computational models from biochemical pathway maps

Andreas Zell, Claudine Chaouiya, Julio Saez-Rodriguez, 2013, BMC Systems Biology.

Inferring transcriptional regulators for sets of co-expressed genes by multi-objective evolutionary optimization

Andreas Zell, Andreas Dräger, Adrian Schröder, 2011, 2011 IEEE Congress of Evolutionary Computation (CEC).

ModuleMaster: A new tool to decipher transcriptional regulatory networks

Andreas Zell, Andreas Dräger, Klaus Harter, 2010, Biosyst..

KEGGtranslator: visualizing and converting the KEGG PATHWAY database to various formats

Andreas Zell, Andreas Dräger, Clemens Wrzodek, 2011, Bioinform..

JSBML: a flexible Java library for working with SBML

Andreas Zell, Nicolas Le Novère, Michael Hucka, 2011, Bioinform..

InCroMAP: integrated analysis of cross-platform microarray and pathway data

Andreas Zell, Johannes Eichner, Clemens Wrzodek, 2012, Bioinform..

JSBML 1.0: providing a smorgasbord of options to encode systems biology models

Chris J. Myers, Nicolas Le Novère, Bernhard O. Palsson, 2015, Bioinform..

Qualitative translation of relations from BioPAX to SBML qual

Andreas Zell, Nicolas Le Novère, Andreas Dräger, 2012, Bioinform..

Ha‐ras and β‐catenin oncoproteins orchestrate metabolic programs in mouse liver tumors

A. Zell, M. Schwarz, A. Braeuning, 2014, International journal of cancer.

Inferring statin-induced gene regulatory relationships in primary human hepatocytes

Andreas Zell, Andreas Dräger, Adrian Schröder, 2011, Bioinform..

Parkinson’s disease: dopaminergic nerve cell model is consistent with experimental finding of increased extracellular transport of α-synuclein

Andreas Zell, Andreas Dräger, Clemens Wrzodek, 2013, BMC Neuroscience.

Integrated enrichment analysis and pathway-centered visualization of metabolomics, proteomics, transcriptomics, and genomics data by using the InCroMAP software.

Andreas Zell, Lars Rosenbaum, Johannes Eichner, 2014, Journal of chromatography. B, Analytical technologies in the biomedical and life sciences.