Qi Liu

发表

X-MOL: large-scale pre-training for molecular understanding and diverse molecular analysis

Hua Wu, Hao Tian, Yu Sun, 2020, bioRxiv.

MetaMed: Linking Microbiota Functions with Medicine Therapeutics

Wei Jia, Q. Ma, K. Ning, 2019, mSystems.

Systematically Characterizing A-to-I RNA Editing Neoantigens in Cancer

Chi Zhou, Liye Zhang, Qi Liu, 2020, Frontiers in Oncology.

Privacy-preserving integration of multiple institutional data for single-cell type identification with scPrivacy

Chenyu Zhu, Bin Duan, Qi Liu, 2022, bioRxiv.

Privacy-preserving integration of multiple institutional data for single-cell type identification with scPrivacy

Chenyu Zhu, Bin Duan, Qi Liu, 2022, bioRxiv.

Toward a molecular mechanism-based prediction of CRISPR-Cas9 targeting effects

Guohui Chuai, Qi Liu, Qinchang Chen, 2022, Science Bulletin.

A deep generative model for multi-view profiling of single-cell RNA-seq and ATAC-seq data

Guohui Chuai, Chenyu Zhu, Bin Duan, 2022, Genome Biology.

Learning for single-cell assignment

Chen Tang, Bin Duan, Chenyu Zhu, 2020, Science Advances.

FL-QSAR: a federated learning based QSAR prototype for collaborative drug discovery.

Qi Liu, Qiang Yang, Guohui Chuai, 2020, Bioinformatics.

DrSim: Similarity Learning for Transcriptional Phenotypic Drug Discovery

Chenyu Zhu, Bin Duan, Qi Liu, 2021, bioRxiv.

Integrating multiple references for single-cell assignment

Chenyu Zhu, Bin Duan, Qi Liu, 2021, Nucleic acids research.

DeepCRISPR: optimized CRISPR guide RNA design by deep learning

Guohui Chuai, Hanhui Ma, Jifang Yan, 2018, Genome Biology.

Advances and challenges in deep generative models for de novo molecule generation

Qi Liu, Jing Yu, Guohui Chuai, 2018, WIREs Computational Molecular Science.

pTuneos: prioritizing tumor neoantigens from next-generation sequencing data

Guohui Chuai, Chi Zhou, Chenyu Zhu, 2019, Genome Medicine.

Benchmarking and integrating genome-wide CRISPR off-target detection and prediction

Guohui Chuai, Jifang Yan, Dongyu Xue, 2020, Nucleic acids research.

The tumor therapy landscape of synthetic lethality

Chi Zhou, Qi Liu, Zhiting Wei, 2021, Nature Communications.

A deep generative model for multi-view profiling of single-cell RNA-seq and ATAC-seq data

Guohui Chuai, Chenyu Zhu, Bin Duan, 2022, Genome Biology.

Elucidation of the dimeric interplay of dual MRAP2 proteins in the zebrafish

Qi Liu, Chao Zhang, Shaliu Fu, 2021, Journal of cellular physiology.

Systematic exploration of optimized base editing gRNA design and pleiotropic effects with BExplorer.

Guohui Chuai, Jifang Yan, Dongyu Xue, 2022, Genomics, proteomics & bioinformatics.

Genome-wide CRISPR off-target prediction and optimization using RNA-DNA interaction fingerprints

Guohui Chuai, Erwei Zuo, Qi Liu, 2023, Nature communications.

Pan-Peptide Meta Learning for T-cell receptor–antigen binding recognition

Guohui Chuai, Chi Zhou, Qi Liu, 2023, Nature Machine Intelligence.

DeepReac+: deep active learning for quantitative modeling of organic chemical reactions

Guohui Chuai, Dongyu Xue, Yukang Gong, 2021, Chemical science.

Personalized tumor combination therapy optimization using the single-cell transcriptome

Guohui Chuai, Chenyu Zhu, Bin Duan, 2023, Genome Medicine.