M. Goodman

发表

A comparison of the fidelity of copying 5-methylcytosine and cytosine at a defined DNA template site.

S. Creighton, P. Jones, J. C. Shen, 1992, Nucleic acids research.

Sequential folding of UmuC by the Hsp70 and Hsp60 chaperone complexes of Escherichia coli.

H. Echols, M. Rajagopalan, P. McInerney, 1994, The Journal of biological chemistry.

In vitro mutation artifacts after formalin fixation and error prone translesion synthesis during PCR

D. Shibata, M. Goodman, N. Quach, 2004, BMC clinical pathology.

Processive AID-catalysed cytosine deamination on single-stranded DNA simulates somatic hypermutation

M. Goodman, P. Pham, R. Bransteitter, 2003, Nature.

Extension of base mispairs by Taq DNA polymerase: implications for single nucleotide discrimination in PCR.

N. Arnheim, M. Goodman, M. Huang, 1992, Nucleic acids research.

Biochemical Analysis of Hypermutational Targeting by Wild Type and Mutant Activation-induced Cytidine Deaminase*

Myron F. Goodman, Peter Calabrese, M. Goodman, 2004, Journal of Biological Chemistry.

Fidelity mechanisms in DNA replication.

H. Echols, M. Goodman, M F Goodman, 1991, Annual review of biochemistry.

Pre-steady-state kinetic analysis of sequence-dependent nucleotide excision by the 3'-exonuclease activity of bacteriophage T4 DNA polymerase.

J M Beechem, R. Eritja, J. Beechem, 1994, Biochemistry.

Stopped-flow fluorescence study of precatalytic primer strand base-unstacking transitions in the exonuclease cleft of bacteriophage T4 DNA polymerase.

J M Beechem, J. Beechem, L. Bloom, 1998, Biochemistry.

Exonuclease-polymerase active site partitioning of primer-template DNA strands and equilibrium Mg2+ binding properties of bacteriophage T4 DNA polymerase.

R. Eritja, J. Beechem, L. Bloom, 1998, Biochemistry.

Analysis of Strand Slippage in DNA Polymerase Expansions of CAG/CTG Triplet Repeats Associated with Neurodegenerative Disease*

M. Goodman, J. Petruska, M F Goodman, 1998, The Journal of Biological Chemistry.

Biochemical basis of DNA replication fidelity.

S. Creighton, T. Kunkel, L. Bloom, 1993, Critical reviews in biochemistry and molecular biology.

2 – DNA Polymerase Fidelity: Misinsertions and Mismatched Extensions

Myron F. Goodman, M. Goodman, 1995 .

The biochemistry of somatic hypermutation.

Sergio Roa, J. Peled, M. Goodman, 2008, Annual review of immunology.

Escherichia coli DNA polymerase II catalyzes chromosomal and episomal DNA synthesis in vivo.

M. Goodman, P. Foster, G. H. Gudmundsson, 1997, Proceedings of the National Academy of Sciences of the United States of America.

Spontaneous and UV-induced mutations in Escherichia coli K-12 strains with altered or absent DNA polymerase I

M. Radman, M. Goodman, B. Bridges, 1989, Journal of bacteriology.

β,γ-CHF- and β,γ-CHCl-dGTP diastereomers: synthesis, discrete 31P NMR signatures, and absolute configurations of new stereochemical probes for DNA polymerases.

Samuel H. Wilson, V. Batra, Yue Wu, 2012, Journal of the American Chemical Society.

Catalytic effects of mutations of distant protein residues in human DNA polymerase β: theory and experiment.

A. Warshel, J. Sweasy, D. Murphy, 2012, Biochemistry.

DNA Polymerase Fidelity Mechanisms

D. Fygenson, M. Goodman, 2001 .

“Action-at-a-Distance” Mutagenesis

Samuel H. Wilson, R. Eritja, G. Tocco, 1999, The Journal of Biological Chemistry.

Ionization of bromouracil and fluorouracil stimulates base mispairing frequencies with guanine.

R. Eritja, L. Bloom, M. Goodman, 1993, The Journal of biological chemistry.

The Proofreading Pathway of Bacteriophage T4 DNA Polymerase*

L. Bloom, R. Baker, M. Goodman, 1998, The Journal of Biological Chemistry.

Crystal structure of the anti-viral APOBEC3G catalytic domain and functional implications

R. Stevens, Lauren G. Holden, Xiaojiang S. Chen, 2008, Nature.

Base analog and neighboring base effects on substrate specificity of recombinant human G:T mismatch-specific thymine DNA-glycosylase.

J. Jiricny, L. Bloom, R. Day, 1996, Biochemistry.

Effect of β,γ-CHF- and β,γ-CHCl-dGTP halogen atom stereochemistry on the transition state of DNA polymerase β.

Samuel H. Wilson, W. Beard, D. D. Shock, 2012, Biochemistry.

Equilibrium between a wobble and ionized base pair formed between fluorouracil and guanine in DNA as studied by proton and fluorine NMR.

R. Eritja, B. Kaplan, M. Goodman, 1988, The Journal of biological chemistry.

Ionized and wobble base-pairing for bromouracil-guanine in equilibrium under physiological conditions. A nuclear magnetic resonance study on an oligonucleotide containing a bromouracil-guanine base-pair as a function of pH.

R. Eritja, B. Kaplan, M. Goodman, 1989, Journal of molecular biology.

Revealing an internal stabilization deficiency in the DNA polymerase β K289M cancer variant through combined use of chemical biology and X-ray crystallography.

Samuel H. Wilson, J. Sweasy, V. Batra, 2020, Biochemistry.

Stereospecific Formation of a Ternary Complex of (S)‐α,β‐Fluoromethylene‐dATP with DNA Pol β

Samuel H. Wilson, W. Beard, V. Batra, 2012, Chembiochem : a European journal of chemical biology.

NMR studies on an oligodeoxynucleotide containing 2-aminopurine opposite adenine.

R. Eritja, B. Kaplan, M. Goodman, 1987, Biochemistry.

A Structural Basis for the Biochemical Behavior of Activation-induced Deoxycytidine Deaminase Class-switch Recombination-defective Hyper-IgM-2 Mutants*

Xiaojiang S. Chen, M. Goodman, Yunxiang Mu, 2012, The Journal of Biological Chemistry.

Dissecting APOBEC3G Substrate Specificity by Nucleoside Analog Interference*

S. L. Le Grice, M. Goodman, J. Rausch, 2009, Journal of Biological Chemistry.

The prospect of APOBEC3G for the future of HIV therapy

Xiaojiang S. Chen, M. Goodman, R. Bransteitter, 2009 .

Increased dNTP Binding Affinity Reveals a Nonprocessive Role for Escherichia coli β Clamp with DNA Polymerase IV*

M. O’Donnell, L. Bloom, M. Goodman, 2004, Journal of Biological Chemistry.

A Transition-State Perspective on Y-Family DNA Polymerase η Fidelity in Comparison with X-Family DNA Polymerases λ and β.

Samuel H. Wilson, J. Florián, M. Goodman, 2019, Biochemistry.

The biochemical basis and in vivo regulation of SOS-induced mutagenesis promoted by Escherichia coli DNA polymerase V (UmuD'2C).

R. Woodgate, M. Goodman, 2000, Cold Spring Harbor symposia on quantitative biology.

Biochemical basis of SOS-induced mutagenesis in Escherichia coli: reconstitution of in vitro lesion bypass dependent on the UmuD'2C mutagenic complex and RecA protein.

E. G. Frank, R. Eritja, M. O’Donnell, 1998, Proceedings of the National Academy of Sciences of the United States of America.

Random Walk Enzymes: Information Theory, Quantum Isomorphism, and Entropy Dispersion.

M. Goodman, P. Pham, C. Mak, 2019, The journal of physical chemistry. A.

Beta,gamma-CHF- and beta,gamma-CHCl-dGTP Diastereomers: Synthesis, Discrete (31)P NMR Signatures, and Absolute Configurations of New Stereochemical Probes for DNA Polymerases

Samuel H. Wilson, V. Batra, Yue Wu, 2012 .

A Sticker Based Mod el for DNA Comp utation

S. Roweis, E. Winfree, N. Chelyapov, 2022 .

A sticker based model for DNA computation

Erik Winfree, Leonard M. Adleman, Sam T. Roweis, 1996, DNA Based Computers.

DifferentialEffectof Adriamycinon DNA Replicativeand Repair Synthesisin CulturedNeonatal Rat CardiacCells1

M. Seraydarian, M. Goodman, H. Fialkoff, 1979 .

Differential effect of adriamycin on DNA replicative and repair synthesis in cultured neonatal rat cardiac cells.

M. Seraydarian, M. Goodman, H. Fialkoff, 1979, Cancer research.

Kinetics of deoxyribonucleotide insertion and extension at abasic template lesions in different sequence contexts using HIV-1 reverse transcriptase.

R. Eritja, H. Cai, L. Bloom, 1993, The Journal of biological chemistry.

Nucleotide insertion kinetics opposite abasic lesions in DNA.

R. Eritja, B. Kaplan, M. Goodman, 1987, The Journal of biological chemistry.

Purification and characterization of an inducible Escherichia coli DNA polymerase capable of insertion and bypass at abasic lesions in DNA.

M. Radman, K. McEntee, R. Eritja, 1988, The Journal of biological chemistry.

Mutagenic effects of 2-deoxyribonolactone in Escherichia coli. An abasic lesion that disobeys the A-rule.

M. Goodman, Y. Kow, M. Greenberg, 2004, Biochemistry.

Synthesis of Oligonucleotides Containing the Abasic Site Model Compound 1,4-Anhydro-2-Deoxy-D-Ribitol

R. Eritja, B. Kaplan, M. Goodman, 1987 .

The Discovery of Error-prone DNA Polymerase V and Its Unique Regulation by RecA and ATP

M. Goodman, 2014, The Journal of Biological Chemistry.

Absence of a role for DNA polymerase II in SOS-induced translesion bypass of phi X174

M. Goodman, S. Wallace, Y. Kow, 1993, Journal of bacteriology.

Mutations for Worse or Better: Low-Fidelity DNA Synthesis by SOS DNA Polymerase V Is a Tightly Regulated Double-Edged Sword.

Antoine M. van Oijen, R. Woodgate, M. Cox, 2016, Biochemistry.

Visualization of two binding sites for the Escherichia coli UmuD'(2)C complex (DNA pol V) on RecA-ssDNA filaments.

E. G. Frank, R. Woodgate, A. Steven, 2000, Journal of molecular biology.

A phenotype for enigmatic DNA polymerase II: a pivotal role for pol II in replication restart in UV-irradiated Escherichia coli.

R. Woodgate, M. Goodman, S. Rangarajan, 1999, Proceedings of the National Academy of Sciences of the United States of America.

Mutagenesis: Purposeful mutations

M. Goodman, 1998, Nature.

A comprehensive comparison of DNA replication past 2-deoxyribose and its tetrahydrofuran analog in Escherichia coli.

M. Goodman, M. Greenberg, Kelly M Kroeger, 2004, Nucleic acids research.

RecA acts in trans to allow replication of damaged DNA by DNA polymerase V

R. Woodgate, M. Cox, K. Schlacher, 2006, Nature.

Enthalpy-Entropy Compensation in DNA Melting Thermodynamics (*)

M. Goodman, J. Petruska, M F Goodman, 1995, The Journal of Biological Chemistry.

Comparison of nucleotide interactions in water, proteins, and vacuum: model for DNA polymerase fidelity.

M. Goodman, J. Petruska, L. Sowers, 1986, Proceedings of the National Academy of Sciences of the United States of America.

A computational study of the hydrolysis of dGTP analogues with halomethylene-modified leaving groups in solution: implications for the mechanism of DNA polymerases.

A. Warshel, S. C. Kamerlin, M. Goodman, 2009, Biochemistry.

Restricted quantum exchange theory for intramolecular vibrational relaxation in polyatomic molecules

M. Goodman, E. Thiele, J. Stone, 1980 .

A unified model for multiple photon dissociation of SF6

M. Goodman, J. Stone, John A. Horsley, 1979 .

Mechanism of loading the Escherichia coli DNA polymerase III beta sliding clamp on DNA. Bona fide primer/templates preferentially trigger the gamma complex to hydrolyze ATP and load the clamp.

B. Ason, M. O’Donnell, M. Hingorani, 2003, The Journal of biological chemistry.

Crystallization of DNA polymerase II from Escherichia coli.

K. McEntee, W. Anderson, M. Goodman, 1994, Journal of molecular biology.

Reward versus risk: DNA cytidine deaminases triggering immunity and disease.

M. Goodman, P. Pham, R. Bransteitter, 2005, Biochemistry.

Alpha,beta-difluoromethylene deoxynucleoside 5'-triphosphates: a convenient synthesis of useful probes for DNA polymerase beta structure and function.

Samuel H. Wilson, T. Upton, W. Beard, 2009, Organic letters.

α,β-Difluoromethylene deoxynucleoside 5’-triphosphates: a convenient synthesis of useful probes for DNA polymerase β structure and function

Samuel H. Wilson, T. Upton, W. Beard, 2009 .

(R)-beta,gamma-fluoromethylene-dGTP-DNA ternary complex with DNA polymerase beta.

Samuel H. Wilson, T. Upton, W. Beard, 2007, Journal of the American Chemical Society.

Simple and efficient purification of Escherichia coli DNA polymerase V: cofactor requirements for optimal activity and processivity in vitro.

R. Woodgate, M. Goodman, A. Vaisman, 2012, DNA repair.

Restricted intramolecular vibrational relaxation in polyatomics and laser selective effects

M. Goodman, E. Thiele, J. Stone, 1980 .

On the wagon—DNA polymerase joins "H-bonds anonymous"

M. Goodman, 1999, Nature Biotechnology.

Variation of nonexchangeable proton resonance chemical shifts as a probe of aberrant base pair formation in DNA.

M. Goodman, G. Fazakerley, L. Sowers, 1986, Biochemistry.

Effect of a template-located 2',2'-difluorodeoxycytidine on the kinetics and fidelity of base insertion by Klenow (3'-->5'exonuclease-) fragment.

W. E. Schy, L. Bloom, M. Goodman, 1993, Cancer research.

Structural and dynamic properties of a fluorouracil-adenine base pair in DNA studied by proton NMR.

R. Eritja, B. Kaplan, M. Goodman, 1987, The Journal of biological chemistry.

Concerning the effect of laser pulse shape on the product yield in collisionless MPD

M. Goodman, E. Thiele, J. Stone, 1980 .

On the nature of laser-induced energy distributions in polyatomic molecules

M. Goodman, E. Thiele, J. Stone, 1979 .

A re‐examination of the use of rate equations to account for fluence dependence, intramolecular relaxation, and unimolecular decay in laser driven polyatomic molecules.

M. Goodman, J. Stone, 1979 .

Purification and properties of DNA polymerase II from Escherichia coli.

K. McEntee, H. Cai, M. Goodman, 1995, Methods in enzymology.

Replication Bypass of Interstrand Cross-link Intermediates by Escherichia coli DNA Polymerase IV*

I. Minko, R. Lloyd, S. Finkel, 2008, Journal of Biological Chemistry.

UmuD'(2)C is an error-prone DNA polymerase, Escherichia coli pol V.

E. G. Frank, M. O’Donnell, R. Woodgate, 1999, Proceedings of the National Academy of Sciences of the United States of America.

Host cell RecA activates a mobile element-encoded mutagenic DNA polymerase

Antoine M. van Oijen, R. Woodgate, F. Pinaud, 2022, Nucleic acids research.

Insights into the complex levels of regulation imposed on Escherichia coli DNA polymerase V.

R. Woodgate, J. McDonald, M. Goodman, 2016, DNA repair.

DNA polymerase V activity is autoregulated by a novel intrinsic DNA-dependent ATPase

R. Woodgate, M. Cox, M. Goodman, 2014, eLife.

Critical amino acids in Escherichia coli UmuC responsible for sugar discrimination and base-substitution fidelity

R. Woodgate, Wei Yang, J. McDonald, 2012, Nucleic acids research.

Lyase activities intrinsic to Escherichia coli polymerases IV and V.

R. Woodgate, M. Goodman, Xuan Shen, 2005, DNA repair.

Immunoglobulin somatic hypermutation in a defined biochemical system recapitulates affinity maturation and permits antibody optimization

M. Lieber, D. McKemy, M. Goodman, 2022, Nucleic acids research.

Molecular mechanism and energetics of clamp assembly in Escherichia coli. The role of ATP hydrolysis when gamma complex loads beta on DNA.

M. O’Donnell, J. Beechem, M. Hingorani, 2000, The Journal of biological chemistry.

Appendix. Gel kinetic analysis of polymerase fidelity in the presence of multiple enzyme DNA encounters.

D. Fygenson, M. Goodman, 1997, The Journal of biological chemistry.

An abasic site in DNA. Solution conformation determined by proton NMR and molecular mechanics calculations.

R. Eritja, J. Cognet, P. Cuniasse, 1987, Nucleic acids research.

ON THE POSSIBILITY OF INFRARED LASER‐INDUCED CHEMISTRY *

H. Seliger, J. Minkowski, M. Goodman, 1970 .

The active form of DNA polymerase V is UmuD′2C–RecA–ATP

R. Woodgate, M. Cox, M. Goodman, 2009, Nature.

SOS-induced DNA polymerases enhance long-term survival and evolutionary fitness

Bethany Yeiser, S. Finkel, M. Goodman, 2002, Proceedings of the National Academy of Sciences of the United States of America.

The Y-family of DNA polymerases.

T. Kunkel, T. Todo, Z. Livneh, 2001, Molecular cell.

The Essential C Family DnaE Polymerase Is Error-prone and Efficient at Lesion Bypass*

M. O’Donnell, I. Bruck, M. Goodman, 2003, Journal of Biological Chemistry.

Sublevel phosphorescence spectra of anthraquinone. I. Site selective sublevel phosphorescence spectra for octane and hexane solutions. . Toshiro Murao and Tohru Azumi 4460 High-Rydberg atomic fragments from electron-impact dissociation of molecules.

W. C. Lineberger, N. Hush, D. Pritchard, 1979 .

An abridged transition state model to derive structure, dynamics, and energy components of DNA polymerase β fidelity.

J. Florián, P. Jeřábek, M. Goodman, 2011, Biochemistry.

Base mispair extension kinetics. Comparison of DNA polymerase alpha and reverse transcriptase.

M. Goodman, J. Petruska, L. Mendelman, 1990, The Journal of biological chemistry.

Nearest neighbor influences on DNA polymerase insertion fidelity.

M. Boosalis, M. Goodman, J. Petruska, 1989, The Journal of biological chemistry.

Computer simulations of protein functions: searching for the molecular origin of the replication fidelity of DNA polymerases.

Arieh Warshel, Jan Florián, A. Warshel, 2005, Proceedings of the National Academy of Sciences of the United States of America.

Computer simulation of the chemical catalysis of DNA polymerases: discriminating between alternative nucleotide insertion mechanisms for T7 DNA polymerase.

Arieh Warshel, Jan Florián, A. Warshel, 2003, Journal of the American Chemical Society.

Computer simulation studies of the fidelity of DNA polymerases

A. Warshel, J. Florián, M. Goodman, 2003, Biopolymers.

Structure-energy analysis of the role of metal ions in phosphodiester bond hydrolysis by DNA polymerase I

A. Warshel, M. Goodman, J. Petruska, 1995 .

Error-prone repair DNA polymerases in prokaryotes and eukaryotes.

M. Goodman, 2002, Annual review of biochemistry.

Comparison between DNA melting thermodynamics and DNA polymerase fidelity.

I. Tinoco, M. Boosalis, C. Cheong, 1988, Proceedings of the National Academy of Sciences of the United States of America.

Synthesis of Oligodeoxyribonucleotides Containing 2,6-Diaminopurine

R. Eritja, M. Goodman, Angeles Canol, 1994 .

Comparative efficiency of forming m4T.G versus m4T.A base pairs at a unique site by use of Escherichia coli DNA polymerase I (Klenow fragment) and Drosophila melanogaster polymerase alpha-primase complex.

J. Essigmann, M. Goodman, M. Dosanjh, 1990, Biochemistry.

Deoxyribonucleotide pools, base pairing, and sequence configuration affecting bromodeoxyuridine- and 2-aminopurine-induced mutagenesis.

M. Goodman, R. Hopkins, 1980, Proceedings of the National Academy of Sciences of the United States of America.

Efficiency and Accuracy of SOS-induced DNA Polymerases Replicating Benzo[a]pyrene-7,8-diol 9,10-Epoxide A and G Adducts*

D. Jerina, M. O’Donnell, R. Woodgate, 2002, The Journal of Biological Chemistry.

Synthesis and biological evaluation of fluorinated deoxynucleotide analogs based on bis-(difluoromethylene)triphosphoric acid

Samuel H. Wilson, T. Upton, G. Olah, 2010, Proceedings of the National Academy of Sciences.

Crystal structure of a DinB family error-prone DNA polymerase from Sulfolobus solfataricus

L. Silvian, T. Ellenberger, M. Goodman, 2001, Nature Structural Biology.

Mechanism of Translesion DNA Synthesis by DNA Polymerase II

T. Paz-Elizur, Z. Livneh, M. Takeshita, 1996, The Journal of Biological Chemistry.

Roles of E. coli DNA polymerases IV and V in lesion-targeted and untargeted SOS mutagenesis

Roger Woodgate, Myron F. Goodman, Mike O'Donnell, 2000, Nature.

Synthesis of Oligodeoxyribonucleotides Containing 2,6‐Diaminopurine.

R. Eritja, M. Goodman, Andres Cano, 1995 .

Synthesis and properties of defined DNA oligomers containing base mispairs involving 2-aminopurine.

R. Eritja, B. Kaplan, M. Goodman, 1986, Nucleic acids research.

Kinetic analysis of base substitution mutagenesis by transient misalignment of DNA and by miscoding.

T. Kunkel, R. Hamatake, A. Sugino, 1989, The Journal of biological chemistry.

Comparison of HIV-1 and avian myeloblastosis virus reverse transcriptase fidelity on RNA and DNA templates.

M. Goodman, M F Goodman, H Yu, 1992, The Journal of biological chemistry.

DNA polymerase insertion fidelity. Gel assay for site-specific kinetics.

M. Boosalis, M. Goodman, J. Petruska, 1987, The Journal of biological chemistry.

Size of the directing moiety at carbon 5 of cytosine and the activity of human DNA(cytosine-5) methyltransferase.

S. S. Smith, T. A. Hardy, D. Baker, 1987, Biochemical and biophysical research communications.

Synthesis and properties of oligonucleotides containing 2'-deoxynebularine and 2'-deoxyxanthosine.

R. Eritja, K. Itakura, M. Boosalis, 1986, Nucleic acids research.

Abasic frameshift in DNA. Solution conformation determined by proton NMR and molecular mechanics calculations.

R. Eritja, J. Cognet, P. Cuniasse, 1989, Biochemistry.

Kinetics of extension of O6-methylguanine paired with cytosine or thymine in defined oligonucleotide sequences.

M. Goodman, M. Dosanjh, B. Singer, 1991, Biochemistry.

Replication bypass of the acrolein-mediated deoxyguanine DNA-peptide cross-links by DNA polymerases of the DinB family.

M. O’Donnell, I. Minko, R. Lloyd, 2008, Chemical research in toxicology.

Gel Kinetic Analysis of DNA Polymerase Fidelity in the Presence of Proofreading Using Bacteriophage T4 DNA Polymerase (*)

S. Creighton, M. Goodman, 1995, The Journal of Biological Chemistry.

Gel fidelity assay measuring nucleotide misinsertion, exonucleolytic proofreading, and lesion bypass efficiencies.

S. Creighton, L. Bloom, M. Goodman, 1995, Methods in enzymology.

Preparation of Imino and Amino N-15 Enriched 2-Aminopurine Deoxynucleoside

M. Goodman, L. Sowers, T. Khwaja, 1989 .

Halogenated beta,gamma-methylene- and ethylidene-dGTP-DNA ternary complexes with DNA polymerase beta: structural evidence for stereospecific binding of the fluoromethylene analogues.

Samuel H. Wilson, T. Upton, W. Beard, 2010, Journal of the American Chemical Society.

Base pairing and mutagenesis: observation of a protonated base pair between 2-aminopurine and cytosine in an oligonucleotide by proton NMR.

R. Eritja, B. Kaplan, M. Goodman, 1986, Proceedings of the National Academy of Sciences of the United States of America.

Kinetic selection vs. free energy of DNA base pairing in control of polymerase fidelity

E. Kool, Emily M. Harcourt, M. Goodman, 2016, Proceedings of the National Academy of Sciences.

Modifying the beta,gamma leaving-group bridging oxygen alters nucleotide incorporation efficiency, fidelity, and the catalytic mechanism of DNA polymerase beta.

Arieh Warshel, Samuel H. Wilson, Jan Florián, 2007, Biochemistry.

Mechanisms Employed by Escherichia coli to Prevent Ribonucleotide Incorporation into Genomic DNA by Pol V

R. Woodgate, J. McDonald, M. Goodman, 2012, PLoS genetics.

Weak Strand Displacement Activity Enables Human DNA Polymerase β to Expand CAG/CTG Triplet Repeats at Strand Breaks*

M. Goodman, J. Petruska, M. Hartenstine, 2002, The Journal of Biological Chemistry.

The Escherichia coli polB Locus Is Identical to dinA, the Structural Gene for DNA Polymerase II

M. Goodman, Z. Qiu, 1997, The Journal of Biological Chemistry.

The APOBEC-2 crystal structure and functional implications for the deaminase AID

M. Klein, Xiaojiang S. Chen, M. Goodman, 2007, Nature.

Influence of neighboring bases on DNA polymerase insertion and proofreading fidelity.

M. Goodman, J. Petruska, 1985, The Journal of biological chemistry.

Influence of 5'-nearest neighbors on the insertion kinetics of the fluorescent nucleotide analog 2-aminopurine by Klenow fragment.

J. Beechem, L. Bloom, M. Goodman, 1993, Biochemistry.

Hydrogen bonding revisited: geometric selection as a principal determinant of DNA replication fidelity.

M. Goodman, Myron F. Goodman, 1997, Proceedings of the National Academy of Sciences of the United States of America.

Preparation of fluorinated RNA nucleotide analogs potentially stable to enzymatic hydrolysis in RNA and DNA polymerase assays.

G. Prakash, John-Paul Jones, M. Goodman, 2014, Journal of fluorine chemistry.

Two Scaffolds from Two Flips: (α,β)/(β,γ) CH2/NH "Met-Im" Analogues of dTTP.

Samuel H. Wilson, V. Batra, M. Goodman, 2015, Organic letters.

A model for SOS-lesion-targeted mutations in Escherichia coli

M. O’Donnell, R. Woodgate, M. Goodman, 2001, Nature.

The importance of repairing stalled replication forks

Myron F. Goodman, Michael M. Cox, Kenneth N. Kreuzer, 2000, Nature.

Genomic landscape of single-stranded DNA gapped intermediates in Escherichia coli

M. Cox, M. Goodman, P. Pham, 2021, Nucleic acids research.

The unimolecular reaction of isolated CF3CN: The influence of laser fluence/intensity on the rovibronic excitation of CN(X 2Σ+) produced via infrared multiple photon dissociation

M. Goodman, E. Thiele, J. Stone, 1982 .

Collisional effects in the multiphoton dissociation of CF2CFCl

J. Stephenson, M. Goodman, E. Thiele, 1980 .

A Mathematical Model for Scanning and Catalysis on Single-stranded DNA, Illustrated with Activation-induced Deoxycytidine Deaminase*♦

M. Goodman, P. Pham, C. Mak, 2013, The Journal of Biological Chemistry.

A biochemically defined system for mammalian nonhomologous DNA end joining.

Yunmei Ma, K. Schwarz, M. Lieber, 2004, Molecular cell.

AID–RNA polymerase II transcription-dependent deamination of IgV DNA

R. Roeder, S. Malik, M. Goodman, 2019, Nucleic acids research.

Activation-induced deoxycytidine deaminase (AID) co-transcriptional scanning at single-molecule resolution

D. Rueda, Kathy R. Chaurasiya, M. Goodman, 2015, Nature Communications.

Overlapping hotspots in CDRs are critical sites for V region diversification

Aviv Bergman, Myron F. Goodman, Thomas MacCarthy, 2015, Proceedings of the National Academy of Sciences.

AID and Apobec3G haphazard deamination and mutational diversity

M. Goodman, P. Pham, M. Scharff, 2012, Cellular and Molecular Life Sciences.

Better living with hyper‐mutation

M. Goodman, 2016, Environmental and molecular mutagenesis.

Structural analysis of the activation-induced deoxycytidine deaminase required in immunoglobulin diversification.

L. Pedersen, Mayuko Shimoda, M. Goodman, 2016, DNA repair.

GANP Interacts with APOBEC3G and Facilitates Its Encapsidation into the Virions To Reduce HIV-1 Infectivity

A. Koito, Mayuko Shimoda, M. Goodman, 2013, The Journal of Immunology.

A Biochemical Analysis Linking APOBEC3A to Disparate HIV-1 Restriction and Skin Cancer*

M. Goodman, P. Pham, C. Mendez, 2013, The Journal of Biological Chemistry.

GANP regulates recruitment of AID to immunoglobulin variable regions by modulating transcription and nucleosome occupancy

M. Ono, M. Goodman, P. Pham, 2013, Nature Communications.

Analysis of a Single-stranded DNA-scanning Process in Which Activation-induced Deoxycytidine Deaminase (AID) Deaminates C to U Haphazardly and Inefficiently to Ensure Mutational Diversity*♦

M. Goodman, P. Pham, Peter Calabrese, 2011, The Journal of Biological Chemistry.

GANP-mediated Recruitment of Activation-induced Cytidine Deaminase to Cell Nuclei and to Immunoglobulin Variable Region DNA*

M. Goodman, P. Pham, K. Maeda, 2010, The Journal of Biological Chemistry.

V-region mutation in vitro, in vivo, and in silico reveal the importance of the enzymatic properties of AID and the sequence environment

A. Bergman, M. Goodman, P. Pham, 2009, Proceedings of the National Academy of Sciences.

Stochastic properties of processive cytidine DNA deaminases AID and APOBEC3G

M. Goodman, P. Pham, L. Chelico, 2009, Philosophical Transactions of the Royal Society B: Biological Sciences.

Hypermutation at A/T Sites during G·U Mismatch Repair in Vitro by Human B-cell Lysates*

M. Goodman, P. Pham, Ke Zhang, 2008, Journal of Biological Chemistry.

Impact of Phosphorylation and Phosphorylation-null Mutants on the Activity and Deamination Specificity of Activation-induced Cytidine Deaminase*

Huilin Zhou, M. Smolka, M. Goodman, 2008, Journal of Biological Chemistry.

Activation-induced cytidine deaminase deaminates deoxycytidine on single-stranded DNA but requires the action of RNase

M. Goodman, P. Pham, R. Bransteitter, 2003, Proceedings of the National Academy of Sciences of the United States of America.

Somatic hypermutation: a mutational panacea.

M. Goodman, P. Pham, R. Bransteitter, 2004, Advances in protein chemistry.

Probing DNA Base-Dependent Leaving Group Kinetic Effects on the DNA Polymerase Transition State.

Samuel H. Wilson, J. Sweasy, W. Beard, 2018, Biochemistry.

Translesion DNA polymerases.

R. Woodgate, M. Goodman, 2013, Cold Spring Harbor perspectives in biology.

Identifying protein–protein interactions in somatic hypermutation

M. Goodman, M. Scharff, Myron F. Goodman, 2005, The Journal of experimental medicine.

The expanding polymerase universe

M. Goodman, B. Tippin, 2000, Nature Reviews Molecular Cell Biology.

DNA deaminases AID and APOBEC3G act processively on single-stranded DNA.

M. Goodman, P. Pham, L. Chelico, 2007, DNA Repair.

APOBEC3G DNA deaminase acts processively 3′ → 5′ on single-stranded DNA

M. Goodman, P. Pham, Peter Calabrese, 2006, Nature Structural &Molecular Biology.

The mRNA tether model for activation-induced deaminase and its relevance for Ig somatic hypermutation and class switch recombination.

M. Lieber, Kefei Yu, C. Hsieh, 2021, DNA repair.

Methylation protects cytidines from AID-mediated deamination.

Alberto Martin, E. Bouhassira, M. Goodman, 2005, Molecular immunology.

XRCC4:DNA ligase IV can ligate incompatible DNA ends and can ligate across gaps

M. Lieber, Jiafeng Gu, M. Goodman, 2007, The EMBO journal.

AID-initiated purposeful mutations in immunoglobulin genes.

F. Romesberg, M. Goodman, M. Scharff, 2007, Advances in immunology.

First AID (Activation-induced Cytidine Deaminase) Is Needed to Produce High Affinity Isotype-switched Antibodies*

M. Goodman, P. Pham, R. Bransteitter, 2006, Journal of Biological Chemistry.

Integrity of immunoglobulin variable regions is supported by GANP during AID-induced somatic hypermutation in germinal center B cells

Mayuko Shimoda, M. Goodman, P. Pham, 2017, International immunology.

Laser-Induced Decomposition of Polyatomic Molecules: A Comparison of Theory with Experiment

M. Goodman, E. Thiele, J. Stone, 1986 .

Infrared laser photolysis of Freon 12

M. P. Freeman, M. Goodman, D. N. Travis, 1974 .

Experiment and theory for CO2 laser‐induced CF2HCl decomposition rate dependence on pressure and intensity

J. Stephenson, M. Goodman, J. Stone, 1979 .

Engineering processive DNA polymerases with maximum benefit at minimum cost

M. Goodman, L. Reha-Krantz, S. Woodgate, 2014, Front. Microbiol..

Regulation of Mutagenic DNA Polymerase V Activation in Space and Time

Antoine M. van Oijen, C. M. Punter, R. Woodgate, 2015, PLoS genetics.

Preferential D-loop Extension by a Translesion DNA Polymerase Underlies Error-Prone Recombination

M. O’Donnell, R. Pomerantz, I. Kurth, 2013, Nature Structural &Molecular Biology.

Translesion DNA polymerases remodel the replisome and alter the speed of the replicative helicase

M. O’Donnell, L. Langston, M. Goodman, 2009, Proceedings of the National Academy of Sciences.

A sliding-clamp toolbelt binds high- and low-fidelity DNA polymerases simultaneously.

M. O’Donnell, R. Georgescu, P. McInerney, 2005, Molecular cell.

DNA polymerase IV primarily operates outside of DNA replication forks in Escherichia coli

Antoine M. van Oijen, R. Woodgate, A. V. van Oijen, 2018, PLoS genetics.

Can Lasers Be Used To Break Chemical Bonds Selectively

M. Goodman, E. Thiele, J. Stone, 1980 .

A derivation of the master equation by restricted quantum exchange

K. Kay, M. Goodman, E. Thiele, 1981 .

The restricted quantum exchange theory of intramolecular T1 and T2 relaxation rates

M. Goodman, E. Thiele, J. Stone, 1981 .

A class of master equations that exhibit a generalized form of canonical invariance and other ‘‘displacement’’ invariances

M. Goodman, E. Thiele, J. Stone, 1981 .

A quantitative test of unimolecular rate theory in the multiphoton dissociation of CF2CFCl

S. Bialkowski, J. Stephenson, M. Goodman, 1981 .

COLLISIONAL EFFECTS IN THE MULTIPHOTON DISSOCIATION OF CHLOROTRIFLUOROETHYLENE

J. Stephenson, M. Goodman, E. Thiele, 1980 .

Laser-induced rate processes in gases: Intermolecular and intramolecular relaxation in a polyatomic molecule

M. Goodman, J. Stone, 1978 .

Laser‐induced rate processes in gases: Dynamics of polyatomic systems

M. Goodman, J. Stone, D. Dows, 1976 .

Laser‐induced rate processes in gases: Phase coherence in an N‐level model

M. Goodman, E. Thiele, J. Stone, 1973 .

Competitive processivity‐clamp usage by DNA polymerases during DNA replication and repair

M. O’Donnell, R. Georgescu, F. J. López de Saro, 2003, The EMBO journal.

AID binds to transcription-induced structures in c-MYC that map to regions associated with translocation and hypermutation

N. Maizels, Michelle L Duquette, M. Goodman, 2005, Oncogene.

DNA Replication and Postreplication Mismatch Repair in Cell-Free Extracts from Cultured Human Neuroblastoma and Fibroblast Cells

G. Tocco, M. Goodman, Pascale David, 1997, The Journal of Neuroscience.

Spectroscopic and calorimetric characterizations of DNA duplexes containing 2-aminopurine.

R. Eritja, K. Breslauer, S. Law, 1996, Biochemistry.

DNA polymerases are error-prone at RecA-mediated recombination intermediates

M. O’Donnell, R. Pomerantz, M. Goodman, 2013, Cell cycle.

Proofreading-defective DNA polymerase II increases adaptive mutation in Escherichia coli.

J. Trimarchi, H. Cai, M. Goodman, 1995, Proceedings of the National Academy of Sciences of the United States of America.

Purification and Properties of Wild-type and Exonuclease-deficient DNA Polymerase II from Escherichia coli(*)

T. Kunkel, K. McEntee, M. Goodman, 1995, The Journal of Biological Chemistry.

DNA replication fidelity and base mispairing mutagenesis

E. Branscomb, M. Goodman, 1986 .

Role of High-Fidelity Escherichia coli DNA Polymerase I in Replication Bypass of a Deoxyadenosine DNA-Peptide Cross-Link

I. Minko, R. Lloyd, S. Finkel, 2011, Journal of bacteriology.

DNA replication fidelity: kinetics and thermodynamics.

M. Goodman, 1988, Mutation research.

Adriamycin interactions with T4 DNA polymerase. Two modes of template-mediated inhibition.

M. Goodman, G. M. Lee, G. M. Lee, 1977, The Journal of biological chemistry.

Oncogene homologue Sch9 promotes age-dependent mutations by a superoxide and Rev1/Polζ-dependent mechanism

Jia Hu, Min Wei, F. Madia, 2009, The Journal of cell biology.

Mutation induced by DNA damage: a many protein affair.

H. Echols, M. Goodman, 1990, Mutation research.

Activity of the purified mutagenesis proteins UmuC, UmuD', and RecA in replicative bypass of an abasic DNA lesion by DNA polymerase III.

M. O’Donnell, R. Woodgate, H. Echols, 1992, Proceedings of the National Academy of Sciences of the United States of America.

Division of labor—sequential ATP hydrolysis drives assembly of a DNA polymerase sliding clamp around DNA

M. O’Donnell, M. Hingorani, L. Bloom, 1999, The EMBO journal.

Pre-steady State Analysis of the Assembly of Wild Type and Mutant Circular Clamps of Escherichia coli DNA Polymerase III onto DNA*

M. O’Donnell, J. Beechem, L. Bloom, 1998, The Journal of Biological Chemistry.

A new model for SOS-induced mutagenesis: how RecA protein activates DNA polymerase V

R. Woodgate, M. Cox, M. Goodman, 2010, Critical reviews in biochemistry and molecular biology.

John W. (Jan) Drake: A Biochemical View of a Geneticist Par Excellence

M. Goodman, L. Reha-Krantz, 2020, Genetics.

Analysis of mutational changes at the HLA locus in single human sperm

H A Erlich, N. Arnheim, H. Erlich, 1995, Human mutation.

Effects of the C4'-oxidized abasic site on replication in Escherichia coli. An unusually large deletion is induced by a small lesion.

M. Goodman, M. Greenberg, Jaeseung Kim, 2004, Biochemistry.

In vitro effects of a C4'-oxidized abasic site on DNA polymerases.

M. Goodman, M. Greenberg, Jaeseung Kim, 2004, Biochemistry.

Abasic Translesion Synthesis by DNA Polymerase β Violates the “A-rule”

Samuel H. Wilson, R. Eritja, G. Tocco, 1997, The Journal of Biological Chemistry.

Abasic translesion synthesis by DNA polymerase beta violates the "A-rule". Novel types of nucleotide incorporation by human DNA polymerase beta at an abasic lesion in different sequence contexts.

R. Eritja, S. H. Wilson, G. Tocco, 1997, The Journal of biological chemistry.

Competitive Fitness During Feast and Famine: How SOS DNA Polymerases Influence Physiology and Evolution in Escherichia coli

S. Finkel, M. Goodman, Christopher H. Corzett, 2013, Genetics.

Escherichia coli DNA Polymerase V Subunit Exchange

R. Woodgate, M. Goodman, Xuan Shen, 2003, Journal of Biological Chemistry.

Replication restart in UV‐irradiated Escherichia coli involving pols II, III, V, PriA, RecA and RecFOR proteins

R. Woodgate, M. Goodman, S. Rangarajan, 2002, Molecular microbiology.

Effect of 3' flanking neighbors on kinetics of pairing of dCTP or dTTP opposite O6-methylguanine in a defined primed oligonucleotide when Escherichia coli DNA polymerase I is used.

J. Essigmann, M. Goodman, M. Dosanjh, 1989, Proceedings of the National Academy of Sciences of the United States of America.

Comparison of polymerase insertion and extension kinetics of a series of O2-alkyldeoxythymidine triphosphates and O4-methyldeoxythymidine triphosphate.

M. Goodman, S. Spengler, F. Chavez, 1989, Biochemistry.

Roles of DNA polymerase V and RecA protein in SOS damage-induced mutation.

M. Cox, K. Schlacher, M. Goodman, 2006, Chemical reviews.

RecA acts as a switch to regulate polymerase occupancy in a moving replication fork

M. O’Donnell, M. Goodman, C. Indiani, 2013, Proceedings of the National Academy of Sciences.

Single-molecule live-cell imaging reveals RecB-dependent function of DNA polymerase IV in double strand break repair

R. Woodgate, S. Jergic, M. Cox, 2020, Nucleic acids research.

Reconstitution of repair-gap UV mutagenesis with purified proteins from Escherichia coli: a role for DNA polymerases III and II.

Z. Livneh, M. O’Donnell, O. Cohen-Fix, 1996, Proceedings of the National Academy of Sciences of the United States of America.

Lessons from 50 years of SOS DNA-damage-induced mutagenesis

K. Schlacher, M. Goodman, 2007, Nature Reviews Molecular Cell Biology.

Fidelity of Escherichia coli DNA Polymerase IV

M. O’Donnell, M. Goodman, P. Pham, 2002, The Journal of Biological Chemistry.

Gene Targeting in Rat Embryo Fibroblasts Promoted by the Polyomavirus Large T Antigen Associated With Neurological Diseases

Myron F. Goodman, Norman Arnheim, N. Arnheim, 1996 .

Stability of intrastrand hairpin structures formed by the CAG/CTG class of DNA triplet repeats associated with neurological diseases.

N. Arnheim, M. Goodman, J. Petruska, 1996, Nucleic acids research.

Investigating the mechanisms of ribonucleotide excision repair in Escherichia coli.

R. Woodgate, J. McDonald, M. Goodman, 2014, Mutation research.

Asymmetry in forming 2-aminopurine . hydroxymethylcytosine heteroduplexes; A model giving misincorporation frequencies and rounds of DNA replication from base-pair populations in vivo.

M. Goodman, R. Hopkins, 1979, Journal of molecular biology.

DNA Mismatch Repair Catalyzed by Extracts of Mitotic, Postmitotic, and Senescent Drosophila Tissues and Involvement of mei-9 Gene Function for Full Activity

M. Goodman, Arvinder Bhui-Kaur, John T. Tower, 1998, Molecular and Cellular Biology.

Modifications to the dNTP triphosphate moiety: from mechanistic probes for DNA polymerases to antiviral and anti-cancer drug design.

M. Goodman, C. McKenna, B. Kashemirov, 2010, Biochimica et biophysica acta.

The biochemical basis of 5-bromouracil- and 2-aminopurine-induced mutagenesis.

R. Lasken, M. Goodman, D. Mhaskar, 1985, Basic life sciences.

Base Stacking and Even/Odd Behavior of Hairpin Loops in DNA Triplet Repeat Slippage and Expansion with DNA Polymerase*

M. Goodman, J. Petruska, M. Hartenstine, 2000, The Journal of Biological Chemistry.

Expression of error-prone polymerases in BL2 cells activated for Ig somatic hypermutation

C. Woo, M. Goodman, V. Poltoratsky, 2001, Proceedings of the National Academy of Sciences of the United States of America.

Laser sideband spectroscopy: a macromolecular probe.

M. Goodman, E. Thiele, 1973, Analytical biochemistry.

Laser stimulation of chemical reactions and scattered field detection

M. Goodman, E. Thiele, J. Stone, 1973 .

Laser-Induced Rate Processes in Gases: Dynamics, Unimolecular Decay, and Scattered Field

M. Goodman, E. Thiele, 1972 .

Error-Prone Candidates Vie for Somatic Mutation

M. Goodman, V. Poltoratsky, M. Scharff, 2000, The Journal of experimental medicine.

Involvement of Escherichia coli DNA polymerase II in response to oxidative damage and adaptive mutation

K. McEntee, D. Touati, S. Lovett, 1994, Journal of bacteriology.

Adriamycin and daunorubicin inhibition of mutant T4 DNA polymerases.

N. Bachur, M. Goodman, M. Bessman, 1974, Proceedings of the National Academy of Sciences of the United States of America.

DNA polymerase fidelity: comparing direct competition of right and wrong dNTP substrates with steady state and pre-steady state kinetics.

M. Goodman, J. Petruska, Keriann Oertell, 2010, Biochemistry.

Error induction and correction by mutant and wild type T4 DNA polymerases. Kinetic error discrimination mechanisms.

D. Galas, E. Branscomb, M. Goodman, 1979, The Journal of biological chemistry.

On the fidelity of DNA replication. The accuracy of T4 DNA polymerases in copying phi X174 DNA in vitro.

T. Kunkel, L. Loeb, M. Goodman, 1984, The Journal of biological chemistry.

Kinetic measurement of 2-aminopurine X cytosine and 2-aminopurine X thymine base pairs as a test of DNA polymerase fidelity mechanisms.

M. Goodman, S. Watanabe, 1982, Proceedings of the National Academy of Sciences of the United States of America.

DNA polymerase fidelity: from genetics toward a biochemical understanding.

D. Fygenson, M. Goodman, M F Goodman, 1998, Genetics.

Fidelity of Escherichia coli DNA Polymerase III Holoenzyme

M. O’Donnell, D. Fygenson, L. Bloom, 1997, The Journal of Biological Chemistry.

Molecular Mechanism and Energetics of Clamp Assembly inEscherichia coli

M. O’Donnell, J. Beechem, M. Hingorani, 2000, The Journal of Biological Chemistry.

Dynamics of Loading the β Sliding Clamp of DNA Polymerase III onto DNA*

Z. Kelman, M. O’Donnell, J. Beechem, 1996, The Journal of Biological Chemistry.

Mutator and antimutator phenotypes of suppressed amber mutants in genes 32, 41, 44, 45, and 62 in bacteriophage T4

M. Goodman, S. Watanabe, 1978, Journal of virology.

Studies on the biochemical basis of spontaneous mutation. III. Rate model for DNA polymerase-effected nucleotide misincorporation.

N. Muzyczka, M. Goodman, M. Bessman, 1974, Journal of molecular biology.

Studies on the biochemical basis of spontaneous mutation. II. The incorporation of a base and its analogue into DNA by wild-type, mutator and antimutator DNA polymerases.

N. Muzyczka, R. Schnaar, M. Goodman, 1974, Journal of molecular biology.

The biochemical basis of 5-bromouracil-induced mutagenesis. Heteroduplex base mispairs involving bromouracil in G x C----A x T and A x T----G x C mutational pathways.

R. Lasken, M. Goodman, 1984, The Journal of biological chemistry.

DNA polymerase β catalytic efficiency mirrors the Asn279–dCTP H‐bonding strength

A. Warshel, J. Florián, Václav Martínek, 2007 .

Pol β catalytic efficiency mirrors the Asn279-dCTP H-bonding strength

A. Warshel, Václav Martínek, M. Goodman, 2007 .

Exploring the role of large conformational changes in the fidelity of DNA polymerase β

Samuel H. Wilson, A. Warshel, W. Beard, 2007, Proteins.

A Dynamic Polymerase Exchange with Escherichia coli DNA Polymerase IV Replacing DNA Polymerase III on the Sliding Clamp*♦

H. Maki, M. Goodman, Asako Furukohri, 2008, Journal of Biological Chemistry.

Coping with replication 'train wrecks' in Escherichia coli using Pol V, Pol II and RecA proteins.

M. Goodman, M F Goodman, 2000, Trends in biochemical sciences.

Relating DNA base-pairing in aqueous media to DNA polymerase fidelity.

M. Goodman, J. Petruska, 2017, Nature reviews. Chemistry.

A Change in the Rate-Determining Step of Polymerization by the K289M DNA Polymerase β Cancer-Associated Variant.

J. Sweasy, M. Goodman, C. McKenna, 2017, Biochemistry.

Transition State in DNA Polymerase β Catalysis: Rate-Limiting Chemistry Altered by Base-Pair Configuration

Samuel H. Wilson, W. Beard, Yue Wu, 2014, Biochemistry.

Simulating the effect of DNA polymerase mutations on transition-state energetics and fidelity: evaluating amino acid group contribution and allosteric coupling for ionized residues in human pol beta.

A. Warshel, Yun Xiang, J. Florián, 2006, Biochemistry.

Crystal Structure of DinB from Sulfolobus solfataricus

L. Silvian, T. Ellenberger, M. Goodman, 2001 .

A sliding clamp monkey wrench

L. Bloom, M. Goodman, 2001, Nature Structural Biology.

A Model for Escherichia coli DNA Polymerase III Holoenzyme Assembly at Primer/Template Ends

M. O’Donnell, J. Beechem, M. Hingorani, 2000, The Journal of Biological Chemistry.

DNA polymerase II is encoded by the DNA damage-inducible dinA gene of Escherichia coli.

K. McEntee, M. Goodman, C. A. Bonner, 1990, Proceedings of the National Academy of Sciences of the United States of America.

Fidelity of Eucaryotic DNA Polymerase δ Holoenzyme fromSchizosaccharomyces pombe *

Z. Kelman, M. O’Donnell, J. Hurwitz, 2000, The Journal of Biological Chemistry.

To Slip or Skip, Visualizing Frameshift Mutation Dynamics for Error-prone DNA Polymerases*

M. Goodman, B. Tippin, J. Bertram, 2004, Journal of Biological Chemistry.

Abasic template lesions are strong chain terminators for DNA primase but not for DNA polymerase alpha during the synthesis of new DNA strands.

M. Goodman, R. Kuchta, L. Zerbe, 1999, Biochemistry.

A RecA Protein Surface Required for Activation of DNA Polymerase V

R. Woodgate, M. Cox, D. Vo, 2015, PLoS genetics.

Purification of a Soluble UmuD′C Complex from Escherichia coli

K. McEntee, R. Woodgate, I. Bruck, 1996, The Journal of Biological Chemistry.

Biochemical Basis of Immunological and Retroviral Responses to DNA-targeted Cytosine Deamination by Activation-induced Cytidine Deaminase and APOBEC3G*

M. Goodman, P. Pham, J. Petruska, 2009, The Journal of Biological Chemistry.

Structural and dynamic properties of a bromouracil-adenine base pair in DNA studied by proton NMR.

R. Eritja, B. Kaplan, M. Goodman, 1987, Journal of biomolecular structure & dynamics.

Molecular Mechanism and Energetics of Clamp Assembly in Escherichia coli THE ROLE OF ATP HYDROLYSIS WHEN g COMPLEX LOADS b ON DNA*

M. O’Donnell, J. Beechem, M. Hingorani, 2000 .

Resolving a Fidelity Paradox

Mike O'Donnell, M. O’Donnell, M. Goodman, 2002, The Journal of Biological Chemistry.

Roles of DNA polymerases V and II in SOS-induced error-prone and error-free repair in Escherichia coli

R. Woodgate, M. Goodman, P. Pham, 2001, Proceedings of the National Academy of Sciences of the United States of America.

Polymerase Processivity: Measurement and Mechanisms

L. Bloom, M. Goodman, 2001 .

Sloppier copier DNA polymerases involved in genome repair.

M. Goodman, B. Tippin, Myron F. Goodman, 2000, Current opinion in genetics & development.

Modulation of RecA Nucleoprotein Function by the Mutagenic UmuD′C Protein Complex*

R. Woodgate, S. Kowalczykowski, W. Rehrauer, 1998, The Journal of Biological Chemistry.

Nucleotide Insertion and Primer Extension at Abasic Template Sites in Different Sequence Contexts a

R. Eritja, L. Bloom, M. Goodman, 1994, Annals of the New York Academy of Sciences.

Absence of a Role for DNA Polymerase II in SOS-Induced Translesion Bypass of ( X 174 YOKE WAH KOW , 1 GUSTAVO FAUNDEZ , '

M. Goodman, S. Wallace, C. A. Bonner, 2022 .

Replication of an oxidized abasic site in Escherichia coli by a dNTP-stabilized misalignment mechanism that reads upstream and downstream nucleotides.

M. Goodman, M. Greenberg, Jaeseung Kim, 2006, Biochemistry.

Human DNA Polymerase ι Promiscuous Mismatch Extension*

E. G. Frank, R. Woodgate, A. Tissier, 2001, The Journal of Biological Chemistry.

The Steric Gate of DNA Polymerase ι Regulates Ribonucleotide Incorporation and Deoxyribonucleotide Fidelity*

R. Woodgate, Wei Yang, K. Donigan, 2014, The Journal of Biological Chemistry.

Deoxyribonucleotide Fidelity Regulates Ribonucleotide Incorporation ι The Steric Gate of DNA Polymerase Enzymology : published online February 14

R. Woodgate, Wei Yang, K. Donigan, 2014 .

Role of RNase H enzymes in maintaining genome stability in Escherichia coli expressing a steric-gate mutant of pol VICE391.

R. Woodgate, A. V. van Oijen, J. McDonald, 2019, DNA repair.

Structural Model for Deoxycytidine Deamination Mechanisms of the HIV-1 Inactivation Enzyme APOBEC3G*♦

D. Erie, Xiaojiang S. Chen, M. Goodman, 2010, The Journal of Biological Chemistry.

A Model for Oligomeric Regulation of APOBEC3G Cytosine Deaminase-dependent Restriction of HIV*

D. Erie, M. Goodman, L. Chelico, 2008, Journal of Biological Chemistry.

An Analytic Approach to Time Averages and Chaotic Behavior in Quantum Mechanics

M. Goodman, E. Thiele, J. Stone, 1982 .

Two distinct modes of RecA action are required for DNA polymerase V-catalyzed translesion synthesis

R. Woodgate, M. Cox, M. Goodman, 2002, Proceedings of the National Academy of Sciences of the United States of America.

Processive DNA synthesis by DNA polymerase II mediated by DNA polymerase III accessory proteins.

K. McEntee, R. Eritja, M. O’Donnell, 1992, The Journal of biological chemistry.

Mapping Functional Substrate-Enzyme Interactions in the pol β Active Site through Chemical Biology: Structural Responses to Acidity Modification of Incoming dNTPs.

Samuel H. Wilson, W. Beard, V. Batra, 2018, Biochemistry.

DNA polymerase beta fidelity: halomethylene-modified leaving groups in pre-steady-state kinetic analysis reveal differences at the chemical transition state.

Arieh Warshel, Samuel H. Wilson, Jan Florián, 2008, Biochemistry.

RecA and SSB genome-wide distribution in ssDNA gaps and ends in Escherichia coli

M. Cox, M. Goodman, P. Pham, 2023, Nucleic acids research.

Specificity and enzymatic mechanism of the editing exonuclease of Escherichia coli DNA polymerase III.

M. O’Donnell, H. Echols, M. Goodman, 1991, The Journal of biological chemistry.

Activation-induced deoxycytidine deaminase: Structural basis for favoring WRC hot motif specificities unique among APOBEC family members.

L. Pedersen, Mayuko Shimoda, M. Goodman, 2017, DNA repair.

Escherichia coli UmuC active site mutants: effects on translesion DNA synthesis, mutagenesis and cell survival.

R. Woodgate, Wei Yang, J. McDonald, 2012, DNA repair.

The fidelity of base selection by the polymerase subunit of DNA polymerase III holoenzyme.

H. Echols, M. Goodman, D. Sloane, 1988, Nucleic acids research.

DNA polymerase V and RecA protein, a minimal mutasome.

R. Woodgate, K. Leslie, M. Cox, 2005, Molecular cell.

On the enzymatic basis for mutagenesis by manganese.

E. Branscomb, M. Goodman, S. Keener, 1983, The Journal of biological chemistry.

Adriamycin: effect on mammalian cardiac cells in culture. I. Cell population and energy metabolism.

M. Seraydarian, M. Goodman, L. Artaza, 1977, Journal of molecular and cellular cardiology.

A model for laser isotope separation in SF6

M. Goodman, J. Stone, D. Dows, 1976 .

Laser-induced multiphoton decomposition: isotope separation in SF6

M. Goodman, J. Stone, D. Dows, 1976 .

Nontransient phase-coherent effects in multilevel systems

M. Goodman, J. Stone, 1976 .

Probing the phase coherence time of multiphoton excited molecules

J. Diels, M. Goodman, E. Thiele, 1981 .

Laser‐induced rate processes in gases: Reduction of generalized to ordinary master equation

M. Goodman, E. Thiele, J. Stone, 1975 .

Phase coherence and collision models in radiatively driven oscillators

M. Goodman, E. Thiele, J. Stone, 1975 .

Mutations caught in the act

Myron F. Goodman, M. Goodman, 1995, Nature.

Generation and Repair of Postreplication Gaps in Escherichia coli

Antoine M. van Oijen, A. V. van Oijen, S. Lovett, 2023, Microbiology and molecular biology reviews : MMBR.

Cardiotoxic effects of adriamycin in mammalian cardiac cells in culture.

M. Seraydarian, M. Goodman, 1976, Recent advances in studies on cardiac structure and metabolism.

The SOS Error-Prone DNA Polymerase V Mutasome and β-Sliding Clamp Acting in Concert on Undamaged DNA and during Translesion Synthesis

R. Woodgate, M. Cox, L. Bloom, 2021, Cells.

Base mispair extension kinetics. Binding of avian myeloblastosis reverse transcriptase to matched and mismatched base pair termini.

S. Creighton, N. Arnheim, H. Cai, 1992, Journal of Biological Chemistry.

Steric and electrostatic effects in DNA synthesis by the SOS-induced DNA polymerases II and IV of Escherichia coli.

Adam P. Silverman, E. Kool, M. Goodman, 2007, Biochemistry.

AID and Apobec3G haphazard deamination and mutational diversity

M. Goodman, P. Pham, M. Scharff, 2013, Cellular and Molecular Life Sciences.

A new class of errant DNA polymerases provides candidates for somatic hypermutation.

M. Goodman, B. Tippin, 2001, Philosophical transactions of the Royal Society of London. Series B, Biological sciences.

Floquet theory analysis of stable and unstable motion

M. Goodman, E. Thiele, J. Stone, 1985 .

Modulation of DNA polymerase IV activity by UmuD and RecA* observed by single-molecule time-lapse microscopy

S. Jergic, A. V. van Oijen, M. Cox, 2019, bioRxiv.

Single-stranded DNA Scanning and Deamination by APOBEC3G Cytidine Deaminase at Single Molecule Resolution*♦

T. Upton, D. Rueda, M. Goodman, 2012, The Journal of Biological Chemistry.

Conformational regulation of Escherichia coli DNA polymerase V by RecA and ATP

R. Woodgate, F. Pinaud, M. Cox, 2019, PLoS genetics.

Purification and characterization of Escherichia coli DNA polymerase V.

R. Woodgate, K. Schlacher, M. Goodman, 2006, Methods in enzymology.

A fidelity assay using "dideoxy" DNA sequencing: a measurement of sequence dependence and frequency of forming 5-bromouracil X guanine base mispairs.

R. Lasken, M. Goodman, 1985, Proceedings of the National Academy of Sciences of the United States of America.

On the molecular basis of transition mutations. Frequency of forming 2-aminopurine-cytosine base mispairs in the G X C----A X T mutational pathway by T4 DNA polymerase in vitro.

M. Goodman, M F Goodman, D N Mhaskar, 1984, The Journal of biological chemistry.

On the molecular basis of transition mutations: frequencies of forming 2-aminopurine.cytosine and adenine.cytosine base mispairs in vitro.

M. Goodman, S. Watanabe, 1981, Proceedings of the National Academy of Sciences of the United States of America.

Mutational Consequences on Replication of M13 Constructs Containing Isomeric Diol Epoxide Adducts in E. coli

D. Jerina, A. Dipple, M. Goodman, 2002 .

2-Aminopurine-induced mutagenesis in T4 bacteriophage: a model relating mutation frequency to 2-aminopurine incorporation in DNA.

M. Goodman, R. Hopkins, W. C. Gore, 1977, Proceedings of the National Academy of Sciences of the United States of America.

Error-prone replication for better or worse.

M. Goodman, P. Pham, B. Tippin, 2004, Trends in microbiology.

Evidence for the absence of DNA proofreading in HeLa cell nuclei.

R. H. Stellwagen, M. L. Wang, M. Goodman, 1981, The Journal of biological chemistry.

ON THE MOLECULAR BASIS OF MUTAGENESIS: ENZYMOLOGICAL AND GENETIC STUDIES WITH THE BACTERIOPHAGE T4 SYSTEM

M. Goodman, L. Clayton, S. Watanabe, 1980 .

UmuD and RecA* modulate the DNA-binding activity of DNA polymerase IV in Escherichia coli

S. Jergic, M. Cox, A. Oijen, 2019 .

Mechanisms of APOBEC3G-catalyzed processive deamination of deoxycytidine on single-stranded DNA

M. Goodman, P. Pham, L. Chelico, 2009, Nature Structural &Molecular Biology.

Purification and properties of two growth stage-dependent deoxyribonucleic acid polymerases from Lactobacillus acidophilus.

M. Goodman, M. Bessman, 1973, The Journal of biological chemistry.

NMR study of the conformation of the 2-aminopurine:cytosine mismatch in DNA.

R. Eritja, D. Wemmer, M. Goodman, 1996, Biochemistry.

RAPID COMMUNlCATION alysis of eaeidpnal Changes at the LOCUS in Single Human Sperm

N. Arnheim, H. Erlich, M. Goodman, 2005 .

A pre-catalytic non-covalent step governs DNA polymerase β fidelity

J. Sweasy, M. Goodman, C. McKenna, 2019, Nucleic acids research.

Evidence of 2-aminopurine-cytosine base mispairs involving two hydrogen bonds.

R. Ratliff, M. Goodman, 1983, The Journal of biological chemistry.

Fidelity of eucaryotic DNA polymerase delta holoenzyme from Schizosaccharomyces pombe.

Z. Kelman, M. O’Donnell, J. Hurwitz, 2000, The Journal of biological chemistry.

Passive polymerase control of DNA replication fidelity: evidence against unfavored tautomer involvement in 2-aminopurine-induced base-transition mutations.

E. Branscomb, M. Goodman, S. Watanabe, 1982, Basic life sciences.

DNA Polymerase β Cancer-Associated Variant I260M Exhibits Nonspecific Selectivity toward the β-γ Bridging Group of the Incoming dNTP.

J. Sweasy, M. Goodman, C. McKenna, 2017, Biochemistry.

DNA Polymerase Beta Cancer-Associated Variant I260M Exhibits Nonspecific Selectivity Towards β - γ Bridging Group of the Incoming dNTP

J. Sweasy, M. Goodman, Khadijeh S. Alnajjar, 2017 .

AN ANALYSIS OF A SINGLE-STRANDED DNA SCANNING PROCESS IN WHICH AID DEAMINATES C TO U HAPHAZARDLY AND INEFFICIENTLY TO ENSURE MUTATIONAL DIVERSITY

M. Goodman, P. Pham, Peter Calabrese, 2011 .

A QUANTITATIVE TEST OF UNIMOLECULAR RATE THEORY IN THE MULTIPHOTON DISSOCIATION OF TRIFLUOROCHLOROETHYLENE

S. Bialkowski, J. Stephenson, M. Goodman, 1981 .

EXPERIMENT AND THEORY FOR CARBON DIOXIDE LASER-INDUCED CHLORODIFLUOROMETHANE DECOMPOSITION RATE DEPENDENCE ON PRESSURE AND INTENSITY

J. Stephenson, M. Goodman, J. Stone, 1979 .

Catalytic effects of mutations of distant protein residues in human DNA polymerase β: theory and experiment.

A. Warshel, J. Sweasy, D. Murphy, 2012, Biochemistry.

In vitro mutation artifacts after formalin fixation and error prone translesion synthesis during PCR

D. Shibata, M. Goodman, N. Quach, 2004, BMC clinical pathology.

A Dynamic Polymerase Exchange with Escherichia coli DNA Polymerase IV Replacing DNA Polymerase III on the Sliding Clamp*♦

H. Maki, M. Goodman, Asako Furukohri, 2008, Journal of Biological Chemistry.

The APOBEC2 Crystal Structure and Functional Implications for AID

M. Klein, Xiaojiang S. Chen, M. Goodman, 2007 .

W. C. Lineberger, N. Hush, D. Pritchard, 1979 .