J. Gobeill

发表

Assisted Knowledge Discovery for the Maintenance of Clinical Guidelines

P. Ruch, Rolf Wipfli, D. Teodoro, 2013, PloS one.

The COMBREX Project: Design, Methodology, and Initial Results

Michael Y. Galperin, S. Salzberg, R. Greiner, 2013, PLoS biology.

DisProt: intrinsic protein disorder annotation in 2020

Silvio C. E. Tosatto, Arne Elofsson, Marco Necci, 2019, Nucleic Acids Res..

A Baseline Approach for Early Detection of Signs of Anorexia and Self-harm in Reddit Posts

Patrick Ruch, Julien Gobeill, Douglas Teodoro, 2019, CLEF.

SIB Literature Services: RESTful customizable search engines in biomedical literature, enriched with automatically mapped biomedical concepts

P. Ruch, E. Pasche, J. Gobeill, 2020, Nucleic Acids Res..

Automatic antibiotherapy guidelines generation using question-answering

Christian Lovis, Patrick Ruch, Julien Gobeill, 2009 .

Automatic Medical Knowledge Acquisition Using Question-Answering

Christian Lovis, Patrick Ruch, Julien Gobeill, 2009, MIE.

Building a Transnational Biosurveillance Network Using Semantic Web Technologies: Requirements, Design, and Preliminary Evaluation

Christian Lovis, Patrick Ruch, Julien Gobeill, 2012, Journal of medical Internet research.

Query and Document Translation by Automatic Text Categorization: A Simple Approach to Establish a Strong Textual Baseline for ImageCLEFmed 2006

H. Müller, J. Gobeill, Patrick Ruch, 2006, CLEF.

EXCELERATE Deliverable D3.2

Damiano Piovesan, S. Tosatto, J. Gobeill, 2022 .

Application of text-mining for updating protein post-translational modification annotation in UniProtKB

I. Xenarios, J. Mcentyre, A. Bridge, 2013, BMC Bioinformatics.

The MedGIFT Group at ImageCLEF 2008

Xin Zhou, Henning Müller, Julien Gobeill, 2009, CLEF.

MedGIFT at ImageCLEF 2008

Henning Müller, Xin Zhou, Julien Gobeill, 2008, CLEF.

University and Hospitals of Geneva Participating at ImageCLEF 2007

Patrick Ruch, Henning Müller, Xin Zhou, 2008, CLEF.

University and Hospitals of Geneva at ImageCLEF 2007

Patrick Ruch, Henning Müller, Xin Zhou, 2007, CLEF.

Translation by Text Categorisation: Medical Image Retrieval in ImageCLEFmed 2006

Patrick Ruch, Henning Müller, Julien Gobeill, 2006, CLEF.

Using argumentation to extract key sentences from biomedical abstracts

Dietrich Rebholz-Schuhmann, Antoine Geissbühler, Patrick Ruch, 2007, Int. J. Medical Informatics.

SciLite: a platform for displaying text-mined annotations as a means to link research articles with biological data

Sophia Ananiadou, Patrick Ruch, Julien Gobeill, 2017, Wellcome open research.

Deep Question Answering for protein annotation

Patrick Ruch, Julien Gobeill, Emilie Pasche, 2015, Database J. Biol. Databases Curation.

Closing the loop: from paper to protein annotation using supervised Gene Ontology classification

Patrick Ruch, Julien Gobeill, Emilie Pasche, 2014, Database J. Biol. Databases Curation.

Overview of the gene ontology task at BioCreative IV

Jung-Hsien Chiang, Zhiyong Lu, Hongfang Liu, 2014, Database J. Biol. Databases Curation.

The SIB Swiss Institute of Bioinformatics’ resources: focus on curated databases

Oliver Horlacher, Damian Szklarczyk, Christian von Mering, 2015, Nucleic Acids Res..

Argumentative Feedback: A Linguistically-Motivated Term Expansion for Information Retrieval

Patrick Ruch, Julien Gobeill, Alan R. Aronson, 2006, ACL.

COVoc and COVTriage: novel resources to support literature triage

D. Osumi-Sutherland, P. Roncaglia, D. Agosti, 2022, Bioinformatics.

UPCLASS: a deep learning-based classifier for UniProtKB entry publications

Patrick Ruch, Julien Gobeill, Douglas Teodoro, 2019, bioRxiv.

Triage by ranking to support the curation of protein interactions

Patrick Ruch, Julien Gobeill, Emilie Pasche, 2017, Database J. Biol. Databases Curation.

SIB Text Mining at TREC Precision Medicine 2020

A. Mottaz, E. Pasche, J. Gobeill, 2020, TREC.

Designing retrieval models to contrast precision-driven ad hoc search vs. recall-driven treatment extraction in Precision Medicine

Patrick Ruch, Julien Gobeill, Emilie Pasche, 2019, TREC.

Accelerating annotation of articles via automated approaches: evaluation of the neXtA5 curation-support tool by neXtProt

Patrick Ruch, Julien Gobeill, Emilie Pasche, 2018, Database J. Biol. Databases Curation.

SIB Text Mining at TREC 2017 Precision Medicine Track

Patrick Ruch, Julien Gobeill, Douglas Teodoro, 2017 .

Customizing a Variant Annotation-Support Tool: an Inquiry into Probability Ranking Principles for TREC Precision Medicine

Patrick Ruch, Julien Gobeill, Douglas Teodoro, 2017, TREC.

Exploiting incoming and outgoing citations for improving Information Retrieval in the TREC 2015 Clinical Decision Support Track

Patrick Ruch, Julien Gobeill, Arnaud Gaudinat, 2015, TREC.

Full-texts representation with Medical Subject Headings, and co-citations network rerank- ing strategies for TREC 2014 Clinical Decision Support Track

Patrick Ruch, Julien Gobeill, Emilie Pasche, 2014, TREC.

BiTeM Group Report for TREC Chemical IR Track 2011

Patrick Ruch, Julien Gobeill, Douglas Teodoro, 2011, TREC.

BiTeM Group Report for TREC Medical Records Track 2011

Patrick Ruch, Julien Gobeill, Douglas Teodoro, 2011, TREC.

Vocabulary-Driven Passage Retrieval for Question-Answering in Genomics

Patrick Ruch, Frédéric Ehrler, Julien Gobeill, 2007, TREC.

SIB Text Mining at TREC Clinical Trials 2021

A. Mottaz, E. Pasche, J. Gobeill, 2022 .

Variomes: a high recall search engine to support the curation of genomic variants

A. Mottaz, E. Pasche, J. Gobeill, 2021, bioRxiv.

Text-Mining Services of the Swiss Variant Interpretation Platform for Oncology

Patrick Ruch, Julien Gobeill, Emilie Pasche, 2020, MIE.

Query and Document Translation by Automatic Text Categorization: A Simple Approach to Establish a Strong Textual Baseline for ImageCLEFmed 2006

Patrick Ruch, Henning Müller, Julien Gobeill, 2006, CLEF.

Automatic IPC Encoding and Novelty Tracking for Effective Patent Mining

Christian Lovis, Patrick Ruch, Julien Gobeill, 2010, NTCIR.

Using Multimodal Mining to Drive Clinical Guidelines Development

Christian Lovis, Patrick Ruch, Julien Gobeill, 2011, MIE.

neXtA5: accelerating annotation of articles via automated approaches in neXtProt

Patrick Ruch, Julien Gobeill, Emilie Pasche, 2016, Database J. Biol. Databases Curation.

Multilingual RECIST classification of radiology reports using supervised learning

S. Pradervand, C. Lovis, O. Michielin, 2023, Frontiers in Digital Health.

Instance-based Learning for Tweet Categorization in CLEF RepLab 2014

Patrick Ruch, Julien Gobeill, Arnaud Gaudinat, 2014, CLEF.

Automatic medical encoding with SNOMED categories

Christian Lovis, Antoine Geissbühler, Patrick Ruch, 2008, BMC Medical Informatics Decis. Mak..

Comparing a rule-based versus statistical system for automatic categorization of MEDLINE documents according to biomedical specialty

Stéfan Jacques Darmoni, Patrick Ruch, Julien Gobeill, 2009, J. Assoc. Inf. Sci. Technol..

Assessing the use of supplementary materials to improve genomic variant discovery

Nona Naderi, A. Mottaz, E. Pasche, 2023, Database J. Biol. Databases Curation.

Machine Learning for Automatic Encoding of French Electronic Medical Records: Is More Data Better?

Patrick Ruch, Julien Gobeill, Rodolphe Meyer, 2020, MIE.

Answering Gene Ontology terms to proteomics questions by supervised macro reading in Medline

Patrick Ruch, Julien Gobeill, Douglas Teodoro, 2012 .

BiTeM at CLEF eHealth Evaluation Lab 2016 Task 2: Multilingual Information Extraction

Patrick Ruch, Julien Gobeill, Emilie Pasche, 2016, CLEF.

Improving average ranking precision in user searches for biomedical research datasets

Thérèse Vachon, Patrick Ruch, Julien Gobeill, 2017, Database J. Biol. Databases Curation.

QA-driven Guidelines Generation for Bacteriotherapy

Christian Lovis, Patrick Ruch, Julien Gobeill, 2009, AMIA.

Question answering for biology and medicine

J. Gobeill, E. Patsche, D. Theodoro, 2009, 2009 9th International Conference on Information Technology and Applications in Biomedicine.

Biomedical Data Management: A Proposal Framework

Christel Daniel-Le Bozec, Christian Lovis, Patrick Ruch, 2009, MIE.

Managing the data deluge: data-driven GO category assignment improves while complexity of functional annotation increases

Patrick Ruch, Julien Gobeill, Emilie Pasche, 2013, Database J. Biol. Databases Curation.

Integration of biomedical data using federated databases

Christian Lovis, Julien Gobeill, Emilie Pasche, 2009 .

From Episodes of Care to Diagnosis Codes: Automatic Text Categorization for Medico-Economic Encoding

Antoine Geissbühler, Patrick Ruch, Julien Gobeill, 2008, AMIA.

The SIB Swiss Institute of Bioinformatics’ resources: focus on curated databases

Joshua L. Payne, Christian J. A. Sigrist, Brian J. Stevenson, 2015, Nucleic Acids Res..

Development and tuning of an original search engine for patent libraries in medicinal chemistry

Thérèse Vachon, Patrick Ruch, Julien Gobeill, 2014, BMC Bioinformatics.

Electronic Processing of Informed Consents in a Global Pharmaceutical Company Environment

Thérèse Vachon, Patrick Ruch, Julien Gobeill, 2014, MIE.

Using Discourse Analysis to Improve Text Categorization in MEDLINE

Antoine Geissbühler, Patrick Ruch, Julien Gobeill, 2007, MedInfo.