S. Greer

发表

Haplotyping germline and cancer genomes using high-throughput linked-read sequencing

Hanlee P. Ji, Grace X. Y. Zheng, John M. Bell, 2015, Nature Biotechnology.

Whole genome analysis identifies the association of TP53 genomic deletions with lower survival in Stage III colorectal cancer

Hanlee P. Ji, John M. Bell, P. van Hummelen, 2019, Scientific Reports.

Haplotype-resolved and integrated genome analysis of the cancer cell line HepG2

Hanlee P. Ji, John M. Bell, W. Wong, 2019, Nucleic acids research.

Haplotype-resolved and integrated genome analysis of the cancer cell line HepG2

Hanlee P. Ji, John M. Bell, W. Wong, 2018, bioRxiv.

Germline variants of ATG7 in familial cholangiocarcinoma alter autophagy and p62

Hanlee P. Ji, John M. Bell, Billy T. Lau, 2022, Scientific Reports.

Complete and haplotype-specific sequence assembly of segmental duplication-mediated genome rearrangements using CRISPR-targeted ultra-long read sequencing (CTLR-Seq)

Hanlee P. Ji, W. Wong, A. Urban, 2020, bioRxiv.

Characterization of the consensus mucosal microbiome of colorectal cancer

Hanlee P. Ji, S. Grimes, L. Nadauld, 2021, bioRxiv.

Concurrent Agonism of Adenosine A2B and Glucocorticoid Receptors in Human Airway Epithelial Cells Cooperatively Induces Genes with Anti-Inflammatory Potential: A Novel Approach to Treat Chronic Obstructive Pulmonary Disease

S. Greer, R. Newton, T. Joshi, 2013, The Journal of Pharmacology and Experimental Therapeutics.

The Human Pangenome’s sequence conservation reveals a landscape of polymorphic structural variations

Hanlee P. Ji, T. Weissman, D. Pavlichin, 2022, bioRxiv.

Large Cancer Pedigree Involving Multiple Cancer Genes including Likely Digenic MSH2 and MSH6 Lynch Syndrome (LS) and an Instance of Recombinational Rescue from LS

Hanlee P. Ji, Billy T. Lau, Yajing Hu, 2022, Cancers.

Single-cell RNA-Seq of follicular lymphoma reveals malignant B-cell types and coexpression of T-cell immune checkpoints.

Noemi Andor, Hanlee P. Ji, Grace X. Y. Zheng, 2019, Blood.

Exploring the spatiotemporal genetic heterogeneity in metastatic lung adenocarcinoma using a nuclei flow‐sorting approach

L. Bubendorf, M. Barrett, C. Ruiz, 2018, The Journal of pathology.

Comprehensive, integrated, and phased whole-genome analysis of the primary ENCODE cell line K562

Hanlee P. Ji, John M. Bell, W. Wong, 2017, bioRxiv.

KmerKeys: a web resource for searching indexed genome assemblies and variants

Hanlee P. Ji, T. Weissman, S. Grimes, 2021, bioRxiv.

Chromosome-scale mega-haplotypes enable digital karyotyping of cancer aneuploidy

Hanlee P. Ji, John M. Bell, Billy T. Lau, 2017, Nucleic acids research.

Targeted short read sequencing and assembly of re-arrangements and candidate gene loci provide megabase diplotypes

Hanlee P. Ji, L. C. Xia, Hojoon Lee, 2019, Nucleic acids research.

Assembly of Mb-size genome segments from linked read sequencing of CRISPR DNA targets

Hanlee P. Ji, L. C. Xia, Hojoon Lee, 2018, bioRxiv.

Linked read sequencing resolves complex genomic rearrangements in gastric cancer metastases

Hanlee P. Ji, Calvin J. Kuo, James M. Ford, 2017, Genome Medicine.

Linked read sequencing resolves complex genomic rearrangements in gastric cancer metastases

Hanlee P. Ji, Billy T. Lau, L. Nadauld, 2017, Genome Medicine.

Genomic consequences of mating system evolution in the Pacific coastal dune endemic, Abronia umbellata (Nyctaginaceae)

S. Greer, 2016 .

Genetic risk of cholangiocarcinoma is linked to the autophagy gene ATG7

Hanlee P. Ji, John M. Bell, Billy T. Lau, 2019, bioRxiv.

Profiling diverse sequence tandem repeats in colorectal cancer reveals co-occurrence of microsatellite and chromosomal instability involving Chromosome 8

Hanlee P. Ji, S. Grimes, E. Hopmans, 2020, bioRxiv.

Population bottleneck associated with but likely preceded the recent evolution of self-fertilization in a coastal dune plant.

S. Wright, C. Eckert, S. Greer, 2022, Evolution; international journal of organic evolution.

The Gastric Cancer Registry: A Genomic Translational Resource for Multidisciplinary Research in Stomach Malignancies

M. Mills, S. Greer, M. Amieva, 2022, medRxiv.

Haplotype-resolved and integrated genome analysis of ENCODE cell line HepG2

Hanlee P. Ji, Xianglong, John M. Bell, 2018 .

Structural variant analysis for linked-read sequencing data with gemtools

Hanlee P. Ji, S U Greer, H P Ji, 2019, Bioinform..

Implementation of Nanopore sequencing as a pragmatic workflow for copy number variant confirmation in the clinic

Premal Shah, M. Rabinowitz, B. Levy, 2023, Journal of Translational Medicine.

Pan-conserved segment tags identify ultra-conserved sequences across assemblies in the human pangenome

William T. Harvey, Hanlee P. Ji, Dmitri S. Pavlichin, 2023, Cell Reports Methods.

Single-cell RNA-Seq of follicular lymphoma reveals malignant B-cell types and coexpression of T-cell immune checkpoints.

Hanlee P. Ji, Grace X. Y. Zheng, Erin F. Simonds, 2019, Blood.

Comprehensive, integrated, and phased whole-genome analysis of the primary ENCODE cell

Hanlee P. Ji, John M. Bell, A. Abyzov, 2022 .

Haplotype-resolved and integrated genome analysis of the cancer cell line HepG2

Hanlee P. Ji, John M. Bell, A. Abyzov, 2019, Nucleic acids research.

Resolving the 22q11.2 deletion using CTLR-Seq reveals chromosomal rearrangement mechanisms and individual variance in breakpoints.

Hanlee P. Ji, A. Abyzov, Yiling Huang, 2024, Proceedings of the National Academy of Sciences of the United States of America.