A. Nicholson

发表

Prebiotic Chemistry and Chemical Evolution of Nucleic Acids

A. Nicholson, C. Menor‐Salván, 2018, Nucleic Acids and Molecular Biology.

Ribonuclease III cleavage of a bacteriophage T7 processing signal. Divalent cation specificity, and specific anion effects.

A. Nicholson, H. Li, B. Chelladurai, 1993, Nucleic acids research.

Function, mechanism and regulation of bacterial ribonucleases.

A. Nicholson, 1999, FEMS microbiology reviews.

Ribonuclease III mechanisms of double-stranded RNA cleavage

A. Nicholson, 2013, Wiley interdisciplinary reviews. RNA.

Global and local mechanical properties control endonuclease reactivity of a DNA origami nanostructure

Vincenzo Carnevale, Allen W Nicholson, Antonio Suma, 2020, Nucleic acids research.

Allosteric modulation of local reactivity in DNA origami

Vincenzo Carnevale, Antonio Suma, V. Carnevale, 2019, bioRxiv.

Ribosome-Templated Azide-Alkyne Cycloadditions: Synthesis of Potent Macrolide Antibiotics by In Situ Click Chemistry.

Meagan C. Small, B. Cooperman, A. MacKerell, 2016, Journal of the American Chemical Society.

Accurate enzymatic cleavage in vitro of a 2'-deoxyribose-substituted ribonuclease III processing signal.

A. Nicholson, 1992, Biochimica et biophysica acta.

Evidence for a dual functional role of a conserved histidine in RNA·DNA heteroduplex cleavage by human RNase H1

A. Nicholson, N. R. Alla, N. Alla, 2012, The FEBS journal.

Photoaffinity labeling of Escherichia coli ribosomes by an aryl azide analogue of puromycin. On the identification of the major covalently labeled ribosomal proteins and on the mechanism of photoincorporation.

B. Cooperman, A. Nicholson, W. A. Strycharz, 1982, Biochemistry.

Thermotoga maritima ribonuclease III. Characterization of thermostable biochemical behavior and analysis of conserved base pairs that function as reactivity epitopes for the Thermotoga 23S rRNA precursor.

A. Nicholson, Lilian Nathania, L. Nathania, 2010, Biochemistry.

Bacteriophage T7 protein kinase phosphorylates RNase E and stabilizes mRNAs synthesized by T7 RNA polymerase

M. Dreyfus, A. Nicholson, I. Marchand, 2001, Molecular microbiology.

Noncanonical DNA Cleavage by BamHI Endonuclease in Laterally Confined DNA Monolayers Is a Step Function of DNA Density and Sequence

A. Nicholson, S. Redhu, M. Castronovo, 2022, Molecules.

Combined computational and experimental analysis of a complex of ribonuclease III and the regulatory macrodomain protein, YmdB

M. Klein, V. Carnevale, M. Alfonso-Prieto, 2015, Proteins.

Energetically important C-H···F-C pseudohydrogen bonding in water: evidence and application to rational design of oligonucleotides with high binding affinity.

J. Watts, M. Damha, A. Nicholson, 2011, Journal of the American Chemical Society.

57 – Photoaffinity Labeling of Ribosomes

B. Cooperman, A. Nicholson, W. A. Strycharz, 1979 .

Intrinsic double-stranded-RNA processing activity of Escherichia coli ribonuclease III lacking the dsRNA-binding domain.

A. Nicholson, W. Sun, E. Jun, 2001, Biochemistry.

Catalytic mechanism of Escherichia coli ribonuclease III: kinetic and inhibitor evidence for the involvement of two magnesium ions in RNA phosphodiester hydrolysis

A. Nicholson, Weimei Sun, Alexandre V. Pertzev, 2005, Nucleic acids research.

Phosphorylation of elongation factor G and ribosomal protein S6 in bacteriophage T7‐infected Escherichia coli

E. Robertson, A. Nicholson, L. A. Aggison, 1994, Molecular microbiology.

STERIC ACCELERATION OF LACTONIZATION REACTION- AN ANALYSIS OF ′STEREOPOPULATION CONTROL′

A. Nicholson, G. M. Loudon, J. C. James, 1976 .

Structure, reactivity, and biology of double-stranded RNA.

A W Nicholson, A. Nicholson, Allen W. Nicholson, 1996, Progress in nucleic acid research and molecular biology.

The enzymatic synthesis of ribonucleic acid in animal tissue. 3. Further purification of soluble RNA polymerase from lymphoid tissue and some general properties of the enzyme.

A. Nicholson, G. Austin, J. Furth, 1970, Biochimica et biophysica acta.

Molecular characterization of a mouse cDNA encoding Dicer, a ribonuclease III ortholog involved in RNA interference

A. Nicholson, R. H. Nicholson, 2002, Mammalian Genome.

Digital Imprinting of RNA Recognition and Processing on a Self-Assembled Nucleic Acid Matrix

A. Nicholson, S. Redhu, M. Castronovo, 2013, Scientific Reports.

Heterodimer-based analysis of subunit and domain contributions to double-stranded RNA processing by Escherichia coli RNase III in vitro.

A. Nicholson, Wenzhao Meng, 2008, The Biochemical journal.

Characterization of RNA sequence determinants and antideterminants of processing reactivity for a minimal substrate of Escherichia coli ribonuclease III

A. Nicholson, Alexandre V. Pertzev, 2006, Nucleic acids research.

Characterization of a chlorella virus PBCV-1 encoded ribonuclease III.

J. V. Van Etten, J. Gurnon, B. Adams, 2003, Virology.

RNA structure-dependent uncoupling of substrate recognition and cleavage by Escherichia coli ribonuclease III.

A. Nicholson, I. Calin-Jageman, 2003, Nucleic acids research.

Mouse ribonuclease III. cDNA structure, expression analysis, and chromosomal location

K. Fortin, A. Nicholson, R. H. Nicholson, 2002, BMC Genomics.

Ethidium-dependent uncoupling of substrate binding and cleavage by Escherichia coli ribonuclease III.

A. Nicholson, I. Calin-Jageman, A. Amarasinghe, 2001, Nucleic acids research.

Escherichia coli ribonuclease III: affinity purification of hexahistidine-tagged enzyme and assays for substrate binding and cleavage.

A. Nicholson, I. Calin-Jageman, W. Sun, 2001, Methods in enzymology.

Dissecting human dicer: some assembly required.

A. Nicholson, 2012, Journal of molecular biology.

Ribonuclease III and the Role of Double-Stranded RNA Processing in Bacterial Systems

A. Nicholson, 2011 .

Regulation of ribonuclease III processing by double-helical sequence antideterminants.

A. Nicholson, K. Zhang, 1997, Proceedings of the National Academy of Sciences of the United States of America.

Mutational analysis of a ribonuclease III processing signal.

A W Nicholson, A. Nicholson, H. Li, 1993, Biochemistry.

Escherichia coli Ribonucleases: Paradigms for Understanding Cellular RNA Metabolism and Regulation

A. Nicholson, 1997 .

Defining the enzyme binding domain of a ribonuclease III processing signal. Ethylation interference and hydroxyl radical footprinting using catalytically inactive RNase III mutants.

A. Nicholson, H. Li, Allen W. Nicholson, 1996, The EMBO journal.

Direct characterization of influenza viral NS1 mRNA and related sequences from infected HeLa cells and a cell-free transcription system.

R. Lamb, S. Ferrari, A. Nicholson, 1986, Biochimica et biophysica acta.

New approaches to understanding double-stranded RNA processing by ribonuclease III purification and assays of homodimeric and heterodimeric forms of RNase III from bacterial extremophiles and mesophiles.

A. Nicholson, R. H. Nicholson, Lilian Nathania, 2008, Methods in enzymology.

Characterization of Aquifex aeolicus ribonuclease III and the reactivity epitopes of its pre-ribosomal RNA substrates

A. Nicholson, R. H. Nicholson, Zhongjie Shi, 2010, Nucleic acids research.

Mutational analysis of an RNA internal loop as a reactivity epitope for Escherichia coli ribonuclease III substrates.

A. Nicholson, I. Calin-Jageman, 2003, Biochemistry.

Phosphorylation of Escherichia coli translation initiation factors by the bacteriophage T7 protein kinase.

A. Nicholson, E. Robertson, 1992, Biochemistry.

Multivalent forms of the ribonuclease H1 hybrid binding domain are high‐affinity binders of RNA–DNA hybrids

A. Nicholson, A. Stopar, 2022, FEBS letters.

Molecular cloning and expression of the bacteriophage T7 0.7(protein kinase) gene.

A. Nicholson, J. Michalewicz, 1992, Virology.

Protein kinase of bacteriophage T7 induces the phosphorylation of only a small number of proteins in the infected cell.

A. Nicholson, E. Robertson, E. S. Robertson, 1990, Virology.

High-level autoenhanced expression of a single-copy gene in Escherichia coli: overproduction of bacteriophage T7 protein kinase directed by T7 late genetic elements.

M. Dreyfus, A. Nicholson, I. Marchand, 2001, Gene.

Emergent Properties and Functions of Nanoconfined Nucleic Acid Architectures

V. Carnevale, A. Nicholson, S. Redhu, 2015 .

Bacteriophage T7 protein kinase: Site of inhibitory autophosphorylation, and use of dephosphorylated enzyme for efficient modification of protein in vitro.

A. Nicholson, Swapna Gone, 2012, Protein expression and purification.

Physical map and genetic early region of the T7-related coliphage, BA14.

A. Nicholson, E. Hsu, J. Michalewicz, 1991, Gene.

Mechanism of Ribonuclease III Catalytic Regulation by Serine Phosphorylation

M. Alfonso-Prieto, A. Nicholson, Samridhdi Paudyal, 2016, Scientific Reports.

Mechanism of action of Escherichia coli ribonuclease III. Stringent chemical requirement for the glutamic acid 117 side chain and Mn2+ rescue of the Glu117Asp mutant.

A. Nicholson, W. Sun, 2001, Biochemistry.

A conserved sequence element in ribonuclease III processing signals is not required for accurate in vitro enzymatic cleavage.

A. Nicholson, H. Li, B. Chelladurai, 1991, Nucleic acids research.

Accurate in vitro cleavage by RNase III of phosphorothioate-substituted RNA processing signals in bacteriophage T7 early mRNA.

A. Nicholson, H. Robertson, K. R. Niebling, 1988, Nucleic acids research.

Photoaffinity labeling of Escherichia coli ribosomes by an aryl azide analogue of puromycin. Evidence for the functional site specificity of labeling.

B. Cooperman, A. Nicholson, W. A. Strycharz, 1982, Biochemistry.

Photoaffinity labeling of Escherichia coli ribosomes with an aryl azide analogue of puromycin

B. Cooperman, A. Nicholson, 1978, FEBS letters.

Physiology of biodeterioration on canvas paintings

Fernando Poyatos, Fátima Morales, Allen W Nicholson, 2018, Journal of cellular physiology.

Mutational analysis of the nuclease domain of Escherichia coli ribonuclease III. Identification of conserved acidic residues that are important for catalytic function in vitro.

Gang Li, A. Nicholson, Weimei Sun, 2004, Biochemistry.

Structural characterization of a ribonuclease III processing signal.

P. Moore, A. Nicholson, B. Chelladurai, 1994, Nucleic Acids Research.

Ribosome-Templated Azide-Alkyne Cycloadditions: Synthesis of Potent Macrolide Antibiotics by In Situ Click Chemistry.

Meagan C. Small, B. Cooperman, A. MacKerell, 2016, Journal of the American Chemical Society.

Energetically important C-H···F-C pseudohydrogen bonding in water: evidence and application to rational design of oligonucleotides with high binding affinity.

J. Watts, M. Damha, A. Nicholson, 2011, Journal of the American Chemical Society.

RNA Degradation In Vitro

A. Nicholson, 2002 .