Daniel J Rigden

发表

Ensembles generated from crystal structures of single distant homologues solve challenging molecular-replacement cases in AMPLE

Ronan M Keegan, Martyn D Winn, Daniel J Rigden, 2018, Acta crystallographica. Section D, Structural biology.

SIMBAD: a sequence-independent molecular-replacement pipeline

Martin Savko, Ronan M Keegan, Daniel J Rigden, 2017, Acta crystallographica. Section D, Structural biology.

Applications of contact predictions to structural biology

Daniel J Rigden, Felix Simkovic, David Baker, 2017, IUCrJ.

Recent developments in MrBUMP: better search-model preparation, graphical interaction with search models, and solution improvement and assessment

Ronan M Keegan, Martyn D Winn, Daniel J Rigden, 2018, Acta crystallographica. Section D, Structural biology.

Assessing the utility of CASP14 models for molecular replacement

Randy J Read, Ronan M Keegan, Daniel J Rigden, 2021, bioRxiv.

Understanding the cell in terms of structure and function: insights from structural genomics.

Daniel J Rigden, D. Rigden, 2006, Current opinion in biotechnology.

The DxDxDG motif for calcium binding: multiple structural contexts and implications for evolution.

Michael Y. Galperin, Daniel J Rigden, Michael Y Galperin, 2004, Journal of molecular biology.

Cathepsin L digestion of nanobioconjugates upon endocytosis.

Brahim Lounis, Daniel J Rigden, Mathias Brust, 2009, ACS nano.

Kinetic characterization, structure modelling studies and crystallization of Trypanosoma brucei enolase.

Daniel J Rigden, F. Opperdoes, D. Rigden, 2003, European journal of biochemistry.

Molecular replacement using ab initio polyalanine models generated with ROSETTA.

Ronan M Keegan, Martyn D Winn, Daniel J Rigden, 2008, Acta crystallographica. Section D, Biological crystallography.

Structural advances on titin: towards an atomic understanding of multi-domain functions in myofilament mechanics and scaffolding.

Olga Mayans, Daniel J Rigden, O. Mayans, 2015, Biochemical Society transactions.

The histidine phosphatase superfamily: structure and function.

Daniel J Rigden, D. Rigden, 2008, Biochemical Journal.

AMPLE: a cluster-and-truncate approach to solve the crystal structures of small proteins using rapidly computed ab initio models.

Ronan M Keegan, Martyn D Winn, Olga Mayans, 2012, Acta crystallographica. Section D, Biological crystallography.

Amidase domains from bacterial and phage autolysins define a family of gamma-D,L-glutamate-specific amidohydrolases.

Michael Y. Galperin, Daniel J Rigden, Michael Y Galperin, 2003, Trends in biochemical sciences.

Prediction of antimicrobial peptides based on the adaptive neuro-fuzzy inference system application.

Daniel J Rigden, Octavio L Franco, D. Rigden, 2012, Biopolymers.

Genomic determinants of sporulation in Bacilli and Clostridia: towards the minimal set of sporulation-specific genes

Michael Y. Galperin, Daniel J Rigden, Yuri I Wolf, 2012, Environmental microbiology.

Candidate-gene based GWAS identifies reproducible DNA markers for metabolic pyrethroid resistance from standing genetic variation in East African Anopheles gambiae

Daniel J Rigden, Pie Müller, David Weetman, 2018, Scientific Reports.

The putative effector‐binding site of Leishmania mexicana pyruvate kinase studied by site‐directed mutagenesis

Daniel J Rigden, F. Opperdoes, D. Rigden, 2002, FEBS letters.

WHISTLE: a high-accuracy map of the human N6-methyladenosine (m6A) epitranscriptome predicted using a machine learning approach

Jionglong Su, Jia Meng, Daniel J Rigden, 2019, Nucleic acids research.

An extracellular calcium-binding domain in bacteria with a distant relationship to EF-hands.

Michael Y. Galperin, Daniel J Rigden, Michael Y Galperin, 2003, FEMS microbiology letters.

Use of covariance analysis for the prediction of structural domain boundaries from multiple protein sequence alignments.

Daniel J Rigden, D. Rigden, 2002, Protein engineering.

Structural diversity of calcium-binding proteins in bacteria: single-handed EF-hands?

Michael Y. Galperin, Daniel J Rigden, Michael Y Galperin, 2003, Trends in microbiology.