V. Bandarian

发表

Revealing the quaternary structure of a heterogeneous noncovalent protein complex through surface-induced dissociation.

Eric D. Dodds, V. Wysocki, Anne E. Blackwell, 2011, Analytical chemistry.

Refining the Structural Model of a Heterohexameric Protein Complex: Surface Induced Dissociation and Ion Mobility Provide Key Connectivity and Topology Information

Micah T. Nelp, V. Wysocki, V. Bandarian, 2015, ACS central science.

Radical SAM Enzymes Involved in Modifications of RiPP Natural Products

V. Bandarian, William M. Kincannon, William M Kincannon, 2020 .

Deconvoluting the Reduction Potentials for the Three [4Fe-4S] Clusters in an AdoMet Radical SCIFF Maturase

S. Elliott, V. Bandarian, William M. Kincannon, 2018, Biochemistry.

The Radical S-Adenosyl-l-methionine Enzyme MftC Catalyzes an Oxidative Decarboxylation of the C-Terminus of the MftA Peptide.

V. Bandarian, N. Bruender, 2016, Biochemistry.

Analysis of Electrochemical Properties of S-Adenosyl-l-methionine and Implications for Its Role in Radical SAM Enzymes

Sven A. Miller, V. Bandarian, Sven A Miller, 2019, Journal of the American Chemical Society.

An informatic framework for decoding protein complexes by top-down mass spectrometry

Mikhail E. Belov, Neil L. Kelleher, Richard D. LeDuc, 2015, Nature Methods.

The Alpha Subunit of Nitrile Hydratase Is Sufficient for Catalytic Activity and Post-Translational Modification

Micah T. Nelp, L. Breci, A. Astashkin, 2014, Biochemistry.

QueE: A Radical SAM Enzyme Involved in the Biosynthesis of 7-Deazapurine Containing Natural Products.

V. Bandarian, N. Bruender, Julia K Lewis, 2018, Methods in enzymology.

Radical-mediated ring contraction in the biosynthesis of 7-deazapurines.

C. Drennan, V. Bandarian, 2015, Current opinion in structural biology.

Spectroscopic, steady-state kinetic, and mechanistic characterization of the radical SAM enzyme QueE, which catalyzes a complex cyclization reaction in the biosynthesis of 7-deazapurines.

C. Krebs, V. Bandarian, R. McCarty, 2013, Biochemistry.

Radical SAM enzymes involved in the biosynthesis of purine-based natural products.

V. Bandarian, 2012, Biochimica et biophysica acta.

Deciphering deazapurine biosynthesis: pathway for pyrrolopyrimidine nucleosides toyocamycin and sangivamycin.

V. Bandarian, R. McCarty, 2008, Chemistry & biology.

Pathways of thymidine hypermodification

P. Weigele, L. Saleh, Ivan R. Corrêa, 2021, Nucleic acids research.

Inhibition of lysine 2,3-aminomutase by the alternative substrate 4-thialysine and characterization of the 4-thialysyl radical intermediate.

G. H. Reed, P. Frey, V. Bandarian, 2001, Archives of biochemistry and biophysics.

Lysine 2,3-aminomutase and trans-4,5-dehydrolysine: characterization of an allylic analogue of a substrate-based radical in the catalytic mechanism.

G. H. Reed, P. Frey, V. Bandarian, 2000, Biochemistry.

A Radical Clock Probe Uncouples H Atom Abstraction from Thioether Cross-Link Formation by the Radical S-Adenosyl-l-methionine Enzyme SkfB

V. Bandarian, William M. Kincannon, N. Bruender, 2018, Biochemistry.

The Creatininase Homolog MftE from Mycobacterium smegmatis Catalyzes a Peptide Cleavage Reaction in the Biosynthesis of a Novel Ribosomally Synthesized Post-translationally Modified Peptide (RiPP)*

V. Bandarian, N. Bruender, 2017, The Journal of Biological Chemistry.

The creatininase homolog MftE from Mycobacterium smegmatis catalyzes a peptide cleavage reaction in the biosynthesis of a novel RiPP

V. Bandarian, N. Bruender, 2017 .

SkfB Abstracts a Hydrogen Atom from Cα on SkfA To Initiate Thioether Cross-Link Formation.

V. Bandarian, N. Bruender, 2016, Biochemistry.

A Protein-derived Oxygen Is the Source of the Amide Oxygen of Nitrile Hydratases*♦

Micah T. Nelp, V. Wysocki, V. Bandarian, 2016, The Journal of Biological Chemistry.

Correction to Chemical and Biological Reduction of the Radical SAM Enzyme 7-Carboxy-7-deazaguanine Synthase.

V. Bandarian, N. Bruender, A. Young, 2016, Biochemistry.

A tRNA modifying enzyme as a tunable regulatory nexus for bacterial stress responses and virulence

Adam J. Lewis, L. Baird, M. Hadjifrangiskou, 2022, Nucleic acids research.

Evolution of new function in the GTP cyclohydrolase II proteins of Streptomyces coelicolor.

N. Jacobsen, V. Bandarian, J. Spoonamore, 2006, Biochemistry.

Mechanistic studies of the radical SAM enzyme 4-demethylwyosine synthase reveals the site of hydrogen atom abstraction

V. Bandarian, A. Young, 2016 .

The deazapurine biosynthetic pathway revealed: in vitro enzymatic synthesis of PreQ(0) from guanosine 5'-triphosphate in four steps.

Á. Somogyi, N. Jacobsen, Guangxin Lin, 2009, Biochemistry.

TYW1: A Radical SAM Enzyme Involved in the Biosynthesis of Wybutosine Bases.

V. Bandarian, A. Young, 2018, Methods in enzymology.

Leveraging Substrate Promiscuity of a Radical S-Adenosyl-L-methionine RiPP Maturase toward Intramolecular Peptide Cross-Linking Applications

V. Bandarian, William M Kincannon, K. A. Eastman, 2022, ACS central science.

Eukaryotic TYW1 Is a Radical SAM Flavoenzyme

V. Bandarian, A. Young, 2021, Biochemistry.

A Radical Intermediate in Bacillus subtilis QueE during Turnover with the Substrate Analogue 6-Carboxypterin.

R. D. Britt, Jarett Wilcoxen, V. Bandarian, 2018, Journal of the American Chemical Society.

Hydrazine cation radical in the active site of ethanolamine ammonia-lyase: mechanism-based inactivation by hydroxyethylhydrazine.

G. H. Reed, V. Bandarian, 1999, Biochemistry.

Escherichia coli QueD is a 6-carboxy-5,6,7,8-tetrahydropterin synthase.

Á. Somogyi, V. Bandarian, R. McCarty, 2009, Biochemistry.

A Single Enzyme Transforms a Carboxylic Acid into a Nitrile through an Amide Intermediate.

Micah T. Nelp, V. Bandarian, 2015, Angewandte Chemie.

Pyruvate is the source of the two carbons that are required for formation of the imidazoline ring of 4-demethylwyosine.

V. Bandarian, A. Young, 2011, Biochemistry.

Journey on the Radical SAM Road as an Accidental Pilgrim

V. Bandarian, 2022, ACS bio & med chem Au.

Human Viperin Causes Radical SAM-Dependent Elongation of Escherichia coli, Hinting at Its Physiological Role.

Micah T. Nelp, V. Bandarian, Branden M. Stepanski, 2017, Biochemistry.

Characterization of a unique coenzyme B6 radical in the ascarylose biosynthetic pathway [14]

G. H. Reed, Hung‐wen Liu, V. Bandarian, 2000 .

Kinetic characterization of an organic radical in the ascarylose biosynthetic pathway.

G. H. Reed, D. Johnson, D. Ballou, 1996, Biochemistry.

Phospholipase D Toxins of Brown Spider Venom Convert Lysophosphatidylcholine and Sphingomyelin to Cyclic Phosphates

M. Cordes, V. Bandarian, G. Binford, 2013, PloS one.

New developments in RiPP discovery, enzymology and engineering.

Lutz Schmitt, Jin Zhong, Roderich D Süssmuth, 2020, Natural product reports.

Human ferredoxin: overproduction in Escherichia coli, reconstitution in vitro, and spectroscopic studies of iron-sulfur cluster ligand cysteine-to-serine mutants.

G. H. Reed, J. Markley, V. Bandarian, 1996, Biochemistry.

DIOLDEHYDRATASE BINDET COENZYM-B12 IN DER BASE-ON -FORM : ESR-UNTERSUCHUNGEN AN COB(II)-ALAMIN

V. Bandarian, E. Stupperich, J. Rétey, 1998 .

Factors modulating conformational equilibria in large modular proteins: A case study with cobalamin-dependent methionine synthase

R. Matthews, M. Ludwig, V. Bandarian, 2003, Proceedings of the National Academy of Sciences of the United States of America.

Identification of cis-ethanesemidione as the organic radical derived from glycolaldehyde in the suicide inactivation of dioldehydrase and of ethanolamine ammonia-lyase.

G. H. Reed, P. Frey, V. Bandarian, 2000, Biochemistry.

The Copper-Inducible cin Operon Encodes an Unusual Methionine-Rich Azurin-Like Protein and a Pre-Q0 Reductase in Pseudomonas putida KT2440

D. Quaranta, C. Rensing, V. Bandarian, 2007, Journal of bacteriology.

7-Carboxy-7-deazaguanine Synthase: A Radical S-Adenosyl-l-methionine Enzyme with Polar Tendencies

C. Drennan, D. Dowling, V. Bandarian, 2017, Journal of the American Chemical Society.

5'-Deoxyadenosine contacts the substrate radical intermediate in the active site of ethanolamine ammonia-lyase: 2H and 13C electron nuclear double resonance studies.

G. H. Reed, O. Magnusson, V. Schramm, 2001, Biochemistry.

Biosynthesis of pyrrolopyrimidines.

V. Bandarian, R. McCarty, 2012, Bioorganic chemistry.

Redox Mediated Modifications of tRNA Bases

V. Bandarian, A. Young, 2020 .

Ethanolamine ammonia-lyase has a "base-on" binding mode for coenzyme B(12).

G. H. Reed, V. Bandarian, J Rétey, 1999, Archives of biochemistry and biophysics.

Isotope effects in the transient phases of the reaction catalyzed by ethanolamine ammonia-lyase: determination of the number of exchangeable hydrogens in the enzyme-cofactor complex.

G. H. Reed, V. Bandarian, 2000, Biochemistry.

Domain alternation switches B12-dependent methionine synthase to the activation conformation

Vahe Bandarian, Donald P. Huddler, R. Matthews, 2002, Nature Structural Biology.

Mechanistic Studies of the Radical S-Adenosyl-L-methionine Enzyme 4-Demethylwyosine Synthase Reveal the Site of Hydrogen Atom Abstraction.

V. Bandarian, A. Young, 2015, Biochemistry.

Radical mediated ring formation in the biosynthesis of the hypermodified tRNA base wybutosine.

V. Bandarian, A. Young, 2013, Current opinion in chemical biology.

Site-Specific Profiling of 4-Thiouridine Across Transfer RNA Genes in Escherichia coli

V. Bandarian, Praneeth Bommisetti, 2022, ACS omega.

Chemical and Biological Reduction of the Radical SAM Enzyme CPH4 Synthase

V. Bandarian, N. Bruender, A. Young, 2015 .

Biochemical and Spectroscopic Studies of Epoxyqueuosine Reductase: A Novel Iron-Sulfur Cluster- and Cobalamin-Containing Protein Involved in the Biosynthesis of Queuosine.

W. Myers, R. D. Britt, V. Bandarian, 2015, Biochemistry.

Variable Substrate Preference among Phospholipase D Toxins from Sicariid Spiders*

M. Cordes, V. Bandarian, G. Binford, 2015, The Journal of Biological Chemistry.

Biochemical and Spectroscopic Characterization of a Radical S-Adenosyl-L-methionine Enzyme Involved in the Formation of a Peptide Thioether Cross-Link.

R. D. Britt, Jarett Wilcoxen, V. Bandarian, 2016, Biochemistry.

B12-Containing Enzymes

R. Matthews, V. Bandarian, 2013 .

Comparison of a PreQ1 Riboswitch Aptamer in Metabolite-bound and Free States with Implications for Gene Regulation*

J. Wedekind, V. Bandarian, J. Jenkins, 2011, The Journal of Biological Chemistry.

The Structural Basis for Recognition of the PreQ0 Metabolite by an Unusually Small Riboswitch Aptamer Domain*♦

Vahe Bandarian, Andrew T Torelli, J. Wedekind, 2009, Journal of Biological Chemistry.

Molecular basis of cobalamin-dependent RNA modification

S. Elliott, C. Drennan, D. Dowling, 2016, Nucleic acids research.

Elucidation of the substrate of tRNA-modifying enzymes MnmEG leads to in vitro reconstitution of an evolutionarily conserved uridine hypermodification

V. Bandarian, A. Young, Praneeth Bommisetti, 2022, The Journal of biological chemistry.

The chemistry and functional diversity of spider phospholipase D toxins

M. Cordes, V. Bandarian, G. Binford, 2016 .

Analysis of the electron paramagnetic resonance spectrum of a radical intermediate in the coenzyme B(12)-dependent ethanolamine ammonia-lyase catalyzed reaction of S-2-aminopropanol.

G. H. Reed, V. Bandarian, 2002, Biochemistry.

A new use for a familiar fold: the X-ray crystal structure of GTP-bound GTP cyclohydrolase III from Methanocaldococcus jannaschii reveals a two metal ion catalytic mechanism.

V. Bandarian, W. Montfort, S. Roberts, 2008, Biochemistry.

Understanding functional divergence in proteins by studying intragenomic homologues.

V. Bandarian, J. Spoonamore, 2008, Biochemistry.

The Role of S‐Adenosylmethionine as a Poor Man's Adenosylcobalamin in the Reaction of Lysine 2,3‐Aminomutase

G. H. Reed, Christopher H. Chang, P. Frey, 2007 .

New Role for Radical SAM Enzymes in the Biosynthesis of Thio(seleno)oxazole RiPP Natural Products.

V. Bandarian, A. G. Roberts, William M Kincannon, 2021, Biochemistry.

Structural and spectroscopic analyses of the sporulation killing factor biosynthetic enzyme SkfB, a bacterial AdoMet radical sactisynthase

C. Krebs, C. Drennan, V. Bandarian, 2018, The Journal of Biological Chemistry.

Biochemical and Structural Studies of 6-Carboxy-5,6,7,8-tetrahydropterin Synthase Reveal the Molecular Basis of Catalytic Promiscuity within the Tunnel-fold Superfamily*

V. Bandarian, S. Roberts, R. McCarty, 2014, The Journal of Biological Chemistry.

Discovery of epoxyqueuosine (oQ) reductase reveals parallels between halorespiration and tRNA modification

V. Bandarian, G. Molnar, R. McCarty, 2011, Proceedings of the National Academy of Sciences.

Measurement of energetics of conformational change in cobalamin-dependent methionine synthase.

R. Matthews, V. Bandarian, 2004, Methods in enzymology.

Cobalamin-Dependent and Cobalamin-Independent Methionine Synthases: Are There Two Solutions to the Same Chemical Problem?

R. Matthews, Z. Zhou, M. Ludwig, 2003 .

Peptide Selenocysteine Substitutions Reveal Direct Substrate-Enzyme Interactions at Auxiliary Clusters in Radical S-Adenosyl-l-methionine Maturases.

V. Bandarian, N. Blackburn, William M Kincannon, 2023, Journal of the American Chemical Society.

Crystal structure of AdoMet radical enzyme 7‐carboxy‐7‐deazaguanine synthase from Escherichia coli suggests how modifications near [4Fe–4S] cluster engender flavodoxin specificity

C. Drennan, D. Dowling, V. Bandarian, 2019, Protein science : a publication of the Protein Society.

Radical SAM enzyme QueE defines a new minimal core fold and metal-dependent mechanism

C. Drennan, D. Dowling, V. Bandarian, 2013, Nature chemical biology.

Quantitation of rate enhancements attained by the binding of cobalamin to methionine synthase.

R. Matthews, V. Bandarian, 2001, Biochemistry.

Spectroelectrochemical Characterization of the Metal Centers in Carbon Monoxide Dehydrogenase (CODH) and Nickel-deficient CODH from Rhodospirillum rubrum(*)

P. Lindahl, V. Bandarian, P. Ludden, 1996, The Journal of Biological Chemistry.

Dioldehydratase Binds Coenzyme B12 in the "Base-On" Mode: ESR Investigations on Cob(II)alamin.

V. Bandarian, E. Stupperich, J. Rétey, 1998, Angewandte Chemie.

Balanced Input from the tRNA Prenyltransferase MiaA Controls the Stress Resistance and Virulence Potential of Extraintestinal Pathogenic Escherichia coli

Adam J. Lewis, L. Baird, V. Bandarian, 2021, bioRxiv.

Direct Nanopore Sequencing for the 17 RNA Modification Types in 36 Locations in the E. coli Ribosome Enables Monitoring of Stress-Dependent Changes

C. Burrows, V. Bandarian, A. Fleming, 2023, ACS chemical biology.

Spectroelectrochemical Characterization of the Metal Centers in Carbon Monoxide Dehydrogenase (CODH) and Nickel-deficient CODH from Rhodospirillum rubrum(*)

P. Lindahl, V. Bandarian, P. Ludden, 1996, The Journal of Biological Chemistry.

The Radical S-Adenosyl-l-methionine Enzyme MftC Catalyzes an Oxidative Decarboxylation of the C-Terminus of the MftA Peptide.

V. Bandarian, N. Bruender, 2016, Biochemistry.