K. Bojarski

发表

Analysis of Procollagen C-Proteinase Enhancer-1/Glycosaminoglycan Binding Sites and of the Potential Role of Calcium Ions in the Interaction

A. Liwo, S. Ricard-Blum, Gergely Kohut, 2019, International journal of molecular sciences.

Molecular dynamics insights into protein-glycosaminoglycan systems from microsecond-scale simulations.

Adam K. Sieradzan, S. Samsonov, K. Bojarski, 2019, Biopolymers.

Use of the UNRES force field in template-assisted prediction of protein structures and the refinement of server models: Test with CASP12 targets.

Agnieszka S. Karczynska, A. Liwo, Jooyoung Lee, 2018, Journal of molecular graphics & modelling.

Synthesis and in silico characterization of artificially phosphorylated glycosaminoglycans

S. Samsonov, T. Riemer, M. Schnabelrauch, 2019 .

The abnormal accumulation of heparan sulfate in patients with mucopolysaccharidosis prevents the elastolytic activity of cathepsin V.

R. Linhardt, Fuming Zhang, S. Samsonov, 2021, Carbohydrate polymers.

Explicit solvent repulsive scaling replica exchange molecular dynamics (RS‐REMD) in molecular modeling of protein‐glycosaminoglycan complexes

M. Zacharias, Till Siebenmorgen, S. Samsonov, 2022, J. Comput. Chem..

Rat cathepsin K: Enzymatic specificity and regulation of its collagenolytic activity.

S. Samsonov, K. Bojarski, G. Lalmanach, 2019, Biochimica et biophysica acta. Proteins and proteomics.

Molecular dynamics-based model of VEGF-A and its heparin interactions.

T. Beke-Somfai, S. Samsonov, F. Zsila, 2018, Journal of molecular graphics & modelling.

Modeling protein structures with the coarse-grained UNRES force field in the CASP14 experiment.

Adam K. Sieradzan, A. Liwo, C. Czaplewski, 2021, Journal of molecular graphics & modelling.

Local and long range potentials for heparin-protein systems for coarse-grained simulations.

A. Liwo, S. Samsonov, K. Bojarski, 2019, Biopolymers.

In silico insights into procathepsin S maturation mediated by glycosaminoglycans.

S. Samsonov, K. Bojarski, 2023, Journal of molecular graphics & modelling.

Role of Oligosaccharide Chain Polarity in Protein-Glycosaminoglycan Interactions

Sergey A. Samsonov, Krzysztof K. Bojarski, S. Samsonov, 2020, J. Chem. Inf. Model..

In silico and in vitro mapping of specificity patterns of glycosaminoglycans towards cysteine cathepsins B, L, K, S and V.

S. Samsonov, K. Bojarski, J. Sage, 2022, Journal of molecular graphics & modelling.

Impact of AlphaFold on structure prediction of protein complexes: The CASP15‐CAPRI experiment

Johnathan D. Guest, Adam K. Sieradzan, Charles W Christoffer, 2023, Proteins.