A. Lipska

发表

Analysis of Procollagen C-Proteinase Enhancer-1/Glycosaminoglycan Binding Sites and of the Potential Role of Calcium Ions in the Interaction

A. Liwo, S. Ricard-Blum, Gergely Kohut, 2019, International journal of molecular sciences.

Scale-consistent approach to the derivation of coarse-grained force fields for simulating structure, dynamics, and thermodynamics of biopolymers.

Adam K. Sieradzan, Agnieszka S. Karczynska, A. Liwo, 2020, Progress in molecular biology and translational science.

Molecular dynamics of protein A and a WW domain with a united-residue model including hydrodynamic interaction.

Adam K. Sieradzan, A. Liwo, H. Scheraga, 2016, The Journal of chemical physics.

Shielding effect in protein folding.

Adam K. Sieradzan, A. Lipska, E. Lubecka, 2018, Journal of molecular graphics & modelling.

Evaluation of the scale-consistent UNRES force field in template-free prediction of protein structures in the CASP13 experiment.

Adam K. Sieradzan, Agnieszka S. Karczynska, A. Liwo, 2019, Journal of molecular graphics & modelling.

A general method for the derivation of the functional forms of the effective energy terms in coarse-grained energy functions of polymers. III. Determination of scale-consistent backbone-local and correlation potentials in the UNRES force field and force-field calibration and validation.

Adam K. Sieradzan, A. Liwo, C. Czaplewski, 2019, The Journal of chemical physics.

Coarse-grained modeling of the calcium, sodium, magnesium and potassium cations interacting with proteins

Adam K. Sieradzan, S. Samsonov, A. Lipska, 2021, Journal of Molecular Modeling.

Evolutionary diversification and characterization of the eubacterial gene family encoding DXR type II, an alternative isoprenoid biosynthetic enzyme

V. Albert, L. Carretero-Paulet, A. Lipska, 2013, BMC Evolutionary Biology.

Optimization of parallel implementation of UNRES package for coarse‐grained simulations to treat large proteins

Adam K. Sieradzan, A. Liwo, C. Czaplewski, 2022, J. Comput. Chem..

Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment

Jeffrey J. Gray, Panagiotis I. Koukos, Johnathan D. Guest, 2021, Proteins.

Long‐time scale simulations of virus‐like particles from three human‐norovirus strains

Adam K. Sieradzan, A. Liwo, C. Czaplewski, 2023, J. Comput. Chem..

Blind prediction of homo‐ and hetero‐protein complexes: The CASP13‐CAPRI experiment

Elodie Laine, Alessandra Carbone, Adam Liwo, 2019, Proteins.

Studies of conformational changes of an arginine-binding protein from Thermotoga maritima in the presence and absence of ligand via molecular dynamics simulations with the coarse-grained UNRES force field

Adam Liwo, Adam K. Sieradzan, Magdalena A. Mozolewska, 2015, Journal of Molecular Modeling.

Theory and Practice of Coarse-Grained Molecular Dynamics of Biologically Important Systems

Adam K. Sieradzan, A. Liwo, C. Czaplewski, 2021, Biomolecules.

Transfer of the Cry1Ab toxin in tritrophic bioassays involving transgenic maize MON810, the herbivore Tetranychus urticae Koch and the predatory ladybird beetle Adalia bipunctata L. (Coleoptera: Coccinelidae).

A. Lipska, Z. Dąbrowski, M. Grabowski, 2014 .

An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12

Adam Liwo, Yi He, Jilong Li, 2018, Scientific Reports.

Modeling the Structure, Dynamics, and Transformations of Proteins with the UNRES Force Field.

Adam K. Sieradzan, Agnieszka S. Karczynska, Tomasz K. Wirecki, 2021, Methods in molecular biology.

Modeling protein structures with the coarse-grained UNRES force field in the CASP14 experiment.

Adam K. Sieradzan, A. Liwo, C. Czaplewski, 2021, Journal of molecular graphics & modelling.

Improved Consensus-Fragment Selection in Template-Assisted Prediction of Protein Structures with the UNRES Force Field in CASP13

Adam Liwo, Keehyoung Joo, Cezary Czaplewski, 2020, J. Chem. Inf. Model..

Performance of protein-structure predictions with the physics-based UNRES force field in CASP11

Adam Liwo, Yi He, Harold A. Scheraga, 2016, Bioinform..

UNRES-GPU for physics-based coarse-grained simulations of protein systems at biological time- and size-scales

Adam K. Sieradzan, A. Liwo, C. Czaplewski, 2023, Bioinformatics.

The Influence of Multiple Classes on Learning Online Classifiers from Imbalanced and Concept Drifting Data Streams

J. Stefanowski, A. Lipska, 2022, ArXiv.

Toward Consistent Physics-Based Modeling of Local Backbone Structures and Chirality Change of Proteins in Coarse-Grained Approaches

Adam K. Sieradzan, C. Czaplewski, A. Lipska, 2023, The journal of physical chemistry letters.

Shielding effect in protein folding.

Adam K. Sieradzan, A. Lipska, E. Lubecka, 2018, Journal of molecular graphics & modelling.

Multi-GPU UNRES for scalable coarse-grained simulations of very large protein systems

C. Czaplewski, A. Lipska, P. Czarnul, 2024, Computer Physics Communications.

Further analyses of APRIL/APRIL-Receptor/Glycosaminoglycan interactions by biochemical assays linked to computational studies.

S. Samsonov, A. Lipska, B. Huard, 2021, Glycobiology.