Hai Nguyen

Folding Simulations for Proteins with Diverse Topologies Are Accessible in Days with a Physics-Based Force Field and Implicit Solvent

He Huang, C. Simmerling, James Maier, 2014, Journal of the American Chemical Society.

Improving the description of salt bridge strength and geometry in a Generalized Born model.

Asim Okur, C. Simmerling, L. Wickstrom, 2011, Journal of molecular graphics & modelling.

Improved chemistry restraints for crystallographic refinement by integrating the Amber force field into Phenix

Jason M. Swails, Pawel A. Janowski, D. Case, 2020, Acta crystallographica. Section D, Structural biology.

Improved chemistry restraints for crystallographic refinement by integrating the Amber force field into Phenix

Jason M. Swails, Pawel A. Janowski, D. Case, 2019, bioRxiv.

Systematic Comparison of Amber and Rosetta Energy Functions for Protein Structure Evaluation.

Aliza B. Rubenstein, D. Case, S. Khare, 2018, Journal of chemical theory and computation.

Refinement of Generalized Born Implicit Solvation Parameters for Nucleic Acids and Their Complexes with Proteins.

Carlos Simmerling, Hai Nguyen, Sherry Bermeo, 2015, Journal of chemical theory and computation.

Improved Generalized Born Solvent Model Parameters for Protein Simulations.

Carlos Simmerling, Hai Nguyen, Daniel R Roe, 2013, Journal of chemical theory and computation.

NGLview–interactive molecular graphics for Jupyter notebooks

Alexander S. Rose, David A. Case, Hai Nguyen, 2018, Bioinform..