Atsuko Yamaguchi

发表

Visualization of Genetic Networks: Edge Crossing Minimization of a Graph Drawing with Vertex Pairs

H. Toh, Atsuko Yamaguchi, 2000 .

Semantic Web technologies for the big data in life sciences.

Hongyan Wu, Atsuko Yamaguchi, 2014, Bioscience trends.

Discriminative application of string similarity methods to chemical and non-chemical names for biomedical abbreviation clustering

Yasunori Yamamoto, T. Takagi, A. Yonezawa, 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine.

Dataset Descriptions: HCLS Community Profile

Gary D. Bader, Michel Dumontier, Alasdair J. G. Gray, 2015 .

Application of a new probabilistic model for recognizing complex patterns in glycans

Tatsuya Akutsu, Kiyoko F. Aoki-Kinoshita, Atsuko Yamaguchi, 2004, ISMB/ECCB.

The 3rd DBCLS BioHackathon : Improving life science with semantic web technologies

Akira R. Kinjo, Fumikazu Konishi, Hammad Afzal, 2013 .

Advances in the development of PubCaseFinder, including the new application programming interface and matching algorithm

Atsuko Yamaguchi, Toyofumi Fujiwara, Jae-Moon Shin, 2021, Human mutation.

Chemical Compound Complexity in Biological Pathways

Kiyoko F. Aoki-Kinoshita, Atsuko Yamaguchi, 2014 .

Mining biologically active patterns in metabolic pathways using microarray expression profiles

Atsuko Yamaguchi, Hiroshi Mamitsuka, Yasushi Okuno, 2003, SKDD.

BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services

Akira R. Kinjo, Yue Wang, Katsuhiko Murakami, 2019, F1000Research.

BioHackathon 2015: Semantics of data for life sciences and reproducible research

Akira R. Kinjo, Núria Queralt-Rosinach, Michel Dumontier, 2020, F1000Research.

Building Linked Open Data towards integration of biomedical scientific literature with DBpedia

Akinori Yonezawa, Yasunori Yamamoto, Atsuko Yamaguchi, 2013, Journal of Biomedical Semantics.

KCaM (KEGG Carbohydrate Matcher): a software tool for analyzing the structures of carbohydrate sugar chains

Tatsuya Akutsu, Kiyoko F. Aoki-Kinoshita, Atsuko Yamaguchi, 2004, Nucleic Acids Res..

Efficient tree-matching methods for accurate carbohydrate database queries.

Tatsuya Akutsu, Atsuko Yamaguchi, Minoru Kanehisa, 2003, Genome informatics. International Conference on Genome Informatics.

BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains

K. Bretonnel Cohen, Yue Wang, Hongyan Wu, 2014, Journal of Biomedical Semantics.

A proof-of-concept study of extracting patient histories for rare/intractable diseases from social media

N. Queralt-Rosinach, Atsuko Yamaguchi, 2020, Genomics & informatics.

YummyData: providing high-quality open life science data

Andrea Splendiani, Yasunori Yamamoto, Atsuko Yamaguchi, 2018, Database J. Biol. Databases Curation.

The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications

Akira R. Kinjo, Fumikazu Konishi, Kiyoko F. Aoki-Kinoshita, 2011, J. Biomed. Semant..

The health care and life sciences community profile for dataset descriptions

Michel Dumontier, Paul T. Groth, Gary D Bader, 2016, PeerJ.

Split4Blank: Maintaining consistency while improving efficiency of loading RDF data with blank nodes

Yasunori Yamamoto, Atsuko Yamaguchi, Yasunori Yamamoto, 2019, PloS one.

A probabilistic model for mining labeled ordered trees: capturing patterns in carbohydrate sugar chains

Tatsuya Akutsu, Kiyoko F. Aoki-Kinoshita, Atsuko Yamaguchi, 2005, IEEE Transactions on Knowledge and Data Engineering.

Graph Complexity of Chemical Compounds in Biological Pathways

Atsuko Yamaguchi, Kiyoko F. Aoki, Hiroshi Mamitsuka, 2003 .

Allie: a database and a search service of abbreviations and long forms

Yasunori Yamamoto, Atsuko Yamaguchi, Toshihisa Takagi, 2011, Database J. Biol. Databases Curation.

The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies

Fumikazu Konishi, Hammad Afzal, Gos Micklem, 2013, J. Biomed. Semant..

The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. The DBCLS BioHackathon Consortium*

Akira R. Kinjo, Kiyoko F. Aoki-Kinoshita, Kiyoshi Asai, 2010, J. Biomed. Semant..

TogoTable: cross-database annotation system using the Resource Description Framework (RDF) data model

Atsuko Yamaguchi, Tsutomu Watanabe, Toshiaki Katayama, 2014, Nucleic Acids Res..

BioBenchmark Toyama 2012: an evaluation of the performance of triple stores on biological data

Hongyan Wu, Yasunori Yamamoto, Atsuko Yamaguchi, 2014, J. Biomed. Semant..

Finding the Maximum Common Subgraph of a Partial k-Tree and a Graph with a Polynomially Bounded Number of Spanning Trees

Kiyoko F. Aoki-Kinoshita, Atsuko Yamaguchi, Hiroshi Mamitsuka, 2003, ISAAC.

A New Method of Computing Ligand-Based Pharmacophore Models for Flexible Chemical Compounds

Atsuko Yamaguchi, H. Shimada, 2005 .

Building linked open data using approximate string matching methods and domain specific resources

Yasunori Yamamoto, A. Yonezawa, Atsuko Yamaguchi, 2011, Workshop on Semantic Web Applications and Tools for Life Sciences.