Lingyang Xu

Steven G. Schroeder, D. Bickhart, C. V. Van Tassell, 2016, DNA research : an international journal for rapid publication of reports on genes and genomes.

Constructing a comprehensive gene co-expression based interactome in Bos taurus

Min Zhao, Huijiang Gao, Junya Li, 2017, PeerJ.

Construction the first gene co-expression-based interactome in cattle

Min Zhao, Huijiang Gao, Junya Li, 2017 .

Reconstruction of a scale-free co-expression network from 92 cattle tissues using

Min Zhao, Huijiang Gao, Junya Li, 2017 .

Genomic inbreeding and runs of homozygosity analysis of indigenous cattle populations in southern China

Junya Li, Lingyang Xu, Dewu Liu, 2022, PloS one.

Genome-wide association studies using binned genotypes

Shizhong Xu, Huijiang Gao, Junya Li, 2019, Heredity.

Incorporating kernelized multi-omics data improves the accuracy of genomic prediction

Huijiang Gao, Junya Li, Lupei Zhang, 2022, Journal of Animal Science and Biotechnology.

Comparative transcriptomic analysis reveals region-specific expression patterns in different beef cuts

George E. Liu, Huijiang Gao, Junya Li, 2022, BMC Genomics.

Multiple association analysis of loci and candidate genes that regulate body size at three growth stages in Simmental beef cattle

Lei Xu, Huijiang Gao, Junya Li, 2020, BMC Genetics.

Multiple association analysis strategies identified loci and candidate genes for body size on three growth stages in Simmental beef cattle

Lei Xu, Huijiang Gao, Junya Li, 2019 .

Genome-wide scan for runs of homozygosity identifies potential candidate regions associated with growth traits in beef cattle

Lei Xu, Huijiang Gao, Junya Li, 2020 .

KCRR: a nonlinear machine learning with a modified genomic similarity matrix improved the genomic prediction efficiency

Huijiang Gao, Junya Li, Lupei Zhang, 2021, Briefings Bioinform..

Application of ensemble learning to genomic selection in chinese simmental beef cattle.

Huijiang Gao, Junya Li, Lupei Zhang, 2020, Journal of animal breeding and genetics = Zeitschrift fur Tierzuchtung und Zuchtungsbiologie.

Transcriptome profiling of CTLs regulated by rapamycin using RNA-Seq

Lei Li, George E. Liu, Lingyang Xu, 2014, Immunogenetics.

A Stacking Ensemble Learning Framework for Genomic Prediction

Huijiang Gao, Junya Li, Lupei Zhang, 2020, Frontiers in Genetics.

Genomic prediction of carcass traits using different haplotype block partitioning methods in beef cattle

Lei Xu, Huijiang Gao, Junya Li, 2022, Evolutionary applications.

Improving Genomic Prediction with Machine Learning Incorporating TPE for Hyperparameters Optimization

Huijiang Gao, Junya Li, Lupei Zhang, 2022, Biology.

Long-Term Impact of Genomic Selection on Genetic Gain Using Different SNP Density

Huijiang Gao, Junya Li, Lingyang Xu, 2022, Agriculture.

Cis-eQTL Analysis and Functional Validation of Candidate Genes for Carcass Yield Traits in Beef Cattle

George E. Liu, Huijiang Gao, Junya Li, 2022, International journal of molecular sciences.

Fast genomic prediction of breeding values using parallel Markov chain Monte Carlo with convergence diagnosis

Huijiang Gao, Junya Li, Hemin Ni, 2018, BMC Bioinformatics.

Comparative Transcriptome Analyses of Gayal (Bos frontalis), Yak (Bos grunniens), and Cattle (Bos taurus) Reveal the High-Altitude Adaptation

Huijiang Gao, Junya Li, Lupei Zhang, 2022, Frontiers in Genetics.

Evaluation of Linkage Disequilibrium, Effective Population Size and Haplotype Block Structure in Chinese Cattle

Lei Xu, Huijiang Gao, Junya Li, 2019, Animals : an open access journal from MDPI.

Comparative Transcriptome Analyses of Drug‐sensitive and Drug‐resistant Strains of Eimeria tenella by RNA‐sequencing

Hui Dong, Lingyang Xu, Bing Huang, 2020, The Journal of eukaryotic microbiology.

Characterization of Copy Number Variation’s Potential Role in Marek’s Disease

Li Ma, George E. Liu, Jiuzhou Z. Song, 2017, International journal of molecular sciences.

Transcriptional atlas analysis from multiple tissues reveals the expression specificity patterns in beef cattle

Lei Xu, George E. Liu, Huijiang Gao, 2022, BMC Biology.

Transcriptome Analysis of Bovine Rumen Tissue in Three Developmental Stages

Lei Xu, Huijiang Gao, Junya Li, 2022, Frontiers in Genetics.

Assessing the Genetic Background and Selection Signatures of Huaxi Cattle Using High-Density SNP Array

Huijiang Gao, Junya Li, Lupei Zhang, 2021, Animals : an open access journal from MDPI.

Genome-wide scan reveals genetic divergence and diverse adaptive selection in Chinese local cattle

Huijiang Gao, Junya Li, Lupei Zhang, 2019, BMC Genomics.

PCA-Based Multiple-Trait GWAS Analysis: A Powerful Model for Exploring Pleiotropy

Huijiang Gao, Junya Li, Lupei Zhang, 2018, Animals : an open access journal from MDPI.

Genome-wide association study identifies loci and candidate genes for meat quality traits in Simmental beef cattle

Huijiang Gao, Junya Li, Yang Wu, 2016, Mammalian Genome.

Genome-wide association study identifies loci and candidate genes for internal organ weights in Simmental beef cattle.

Huijiang Gao, Junya Li, Lupei Zhang, 2018, Physiological genomics.

Identifying novel genes for carcass traits by testing G × E interaction through genome-wide meta-analysis in Chinese Simmental beef cattle

Huijiang Gao, Junya Li, Lupei Zhang, 2018, Livestock Science.

Searching for new loci and candidate genes for economically important traits through gene-based association analysis of Simmental cattle

Huijiang Gao, Junya Li, Lupei Zhang, 2017, Scientific Reports.

Incorporating genome-wide and transcriptome-wide association studies to identify genetic elements of longissimus dorsi muscle in Huaxi cattle

Huijiang Gao, Junya Li, Yang Cao, 2023, Frontiers in Genetics.

Comparative analyses across cattle genders and breeds reveal the pitfalls caused by false positive and lineage-differential copy number variations

D. Bickhart, C. V. Van Tassell, T. Sonstegard, 2016, Scientific Reports.

Genome-wide recombination map construction from single sperm sequencing in cattle

Li Li, Hongping Zhang, B. Rosen, 2022, BMC Genomics.

Genome wide association study identifies SNPs associated with fatty acid composition in Chinese Wagyu cattle

Lei Xu, Huijiang Gao, Junya Li, 2019, Journal of Animal Science and Biotechnology.

Genome-wide CNV analysis reveals variants associated with growth traits in Bos indicus

Benjamin D. Rosen, Steven G. Schroeder, Tad S. Sonstegard, 2016, BMC Genomics.

A genome-wide survey reveals a deletion polymorphism associated with resistance to gastrointestinal nematodes in Angus cattle

D. Bickhart, T. Sonstegard, C. Tassell, 2014, Functional & Integrative Genomics.

Genetic assessment of inbred chicken lines indicates genomic signatures of resistance to Marek’s disease

Hans H. Cheng, Jiuzhou Z. Song, Yi Ding, 2018, Journal of Animal Science and Biotechnology.

Transcriptional states and chromatin accessibility during bovine myoblasts proliferation and myogenic differentiation

Huijiang Gao, Junya Li, Lupei Zhang, 2022, Cell proliferation.

Genome Divergence and Dynamics in the Thin-Tailed Desert Sheep From Sudan

Qianjun Zhao, Yuehui Ma, Lingyang Xu, 2021, Frontiers in Genetics.

Estimation of linkage disequilibrium levels and haplotype block structure in Chinese Simmental and Wagyu beef cattle using high-density genotypes

Huijiang Gao, Junya Li, Lupei Zhang, 2016 .

Discovery of Genomic Characteristics and Selection Signatures in Southern Chinese Local Cattle

Junya Li, Liu Yang, Lingyang Xu, 2020, Frontiers in Genetics.

Identification and validation of a novel candidate gene regulating net meat weight in Simmental beef cattle based on imputed next‐generation sequencing

J. Jensen, W. Guo, Huijiang Gao, 2020, Cell proliferation.

A Fast and Powerful Empirical Bayes Method for Genome-Wide Association Studies

Bo Zhu, Julong Wei, Junya Li, 2019, Animals : an open access journal from MDPI.

Copy number variation-based genome wide association study reveals additional variants contributing to meat quality in Swine

Xin Liu, Hua Yan, Lixian Wang, 2015, Scientific Reports.

Recent Advances in Studying of Copy Number Variation and Gene Expression

Lingyang Xu, George E. Liu, Lingyang Xu, 2014 .

Population-genetic properties of differentiated copy number variations in cattle

D. Bickhart, C. V. Van Tassell, T. Sonstegard, 2016, Scientific Reports.

Genome-wide assessment of genetic diversity and population structure insights into admixture and introgression in Chinese indigenous cattle

Jiabao Zhang, Huijiang Gao, Junya Li, 2018, BMC Genetics.

Genome wide association study and genomic prediction for fatty acid composition in Chinese Simmental beef cattle using high density SNP array

Huijiang Gao, Junya Li, Hemin Ni, 2017, BMC Genomics.

Systematic Profiling of Short Tandem Repeats in the Cattle Genome

Ryan J. Haasl, D. Bickhart, C. V. Van Tassell, 2016, Genome biology and evolution.

Genome-Wide Association Study Based on Random Regression Model Reveals Candidate Genes Associated with Longitudinal Data in Chinese Simmental Beef Cattle

Huijiang Gao, Junya Li, Lupei Zhang, 2021, Animals : an open access journal from MDPI.

Integration of selection signatures and multi-trait GWAS reveals polygenic genetic architecture of carcass traits in beef cattle.

Huijiang Gao, Junya Li, Jiuzhou Z. Song, 2021, Genomics.

Genomic Prediction and Association Analysis with Models Including Dominance Effects for Important Traits in Chinese Simmental Beef Cattle

Lei Xu, Huijiang Gao, Junya Li, 2019, Animals : an open access journal from MDPI.

Genome wide association study and genomic prediction for fatty acid composition in Chinese Simmental beef cattle using high density SNP array

Huijiang Gao, Junya Li, Hemin Ni, 2017, BMC Genomics.

Genome-Wide Scan Identifies Selection Signatures in Chinese Wagyu Cattle Using a High-Density SNP Array

Lei Xu, Shengli Zhang, Huijiang Gao, 2019, Animals : an open access journal from MDPI.

Reduced representation bisulphite sequencing of ten bovine somatic tissues reveals DNA methylation patterns and their impacts on gene expression

Steven G. Schroeder, Hong Chen, D. Bickhart, 2016, BMC Genomics.

Identification of Candidate Variants Associated With Bone Weight Using Whole Genome Sequence in Beef Cattle

Huijiang Gao, Junya Li, Lupei Zhang, 2021, Frontiers in Genetics.

Weighted Single-Step Genome-Wide Association Study for Growth Traits in Chinese Simmental Beef Cattle

Huijiang Gao, Junya Li, Lupei Zhang, 2020, Genes.

PacBio Single-Molecule Long-Read Sequencing Provides New Light on the Complexity of Full-Length Transcripts in Cattle

Huijiang Gao, Junya Li, Lupei Zhang, 2021, Frontiers in Genetics.

Genome-wide association study of milk components in Chinese Holstein cows using single nucleotide polymorphism

Wen-qin Song, Chengbin Chen, Lingyang Xu, 2020 .

RAPTR-SV: a hybrid method for the detection of structural variants

Steven G. Schroeder, Tad S. Sonstegard, Curtis P. Van Tassell, 2015, Bioinform..

Bta-miR-24-3p Controls the Myogenic Differentiation and Proliferation of Fetal Bovine Skeletal Muscle-Derived Progenitor Cells by Targeting ACVR1B

L. Willems, Xin Hu, Junya Li, 2019, Animals : an open access journal from MDPI.

Genomic signatures reveal new evidences for selection of important traits in domestic cattle.

D. Bickhart, S. Schroeder, T. Sonstegard, 2015, Molecular biology and evolution.

Genome-Wide Assessment of Runs of Homozygosity in Chinese Wagyu Beef Cattle

Lei Xu, Huijiang Gao, Junya Li, 2020, Animals : an open access journal from MDPI.

bta-miR-23a Regulates the Myogenic Differentiation of Fetal Bovine Skeletal Muscle-Derived Progenitor Cells by Targeting MDFIC Gene

L. Willems, Xin Hu, M. Du, 2020, Genes.

Towards the detection of copy number variation from single sperm sequencing in cattle

Li Li, Hongping Zhang, B. Rosen, 2022, BMC genomics.

Characterization of Duck (Anas platyrhynchos) Short Tandem Repeat Variation by Population-Scale Genome Resequencing

Zhengkui Zhou, S. Hou, Lingyang Xu, 2018, Front. Genet..

Validation of the Prediction Accuracy for 13 Traits in Chinese Simmental Beef Cattle Using a Preselected Low-Density SNP Panel

Lei Xu, Huijiang Gao, Junya Li, 2021, Animals : an open access journal from MDPI.

Evaluation of GBLUP, BayesB and elastic net for genomic prediction in Chinese Simmental beef cattle

Huijiang Gao, Junya Li, Lupei Zhang, 2019, PloS one.

Bovine Exome Sequence Analysis and Targeted SNP Genotyping of Recessive Fertility Defects BH1, HH2, and HH3 Reveal a Putative Causative Mutation in SMC2 for HH3

Jon R. Armstrong, Steven G. Schroeder, P. VanRaden, 2014, PLoS ONE.

Transcriptomics and Lipid Metabolomics Analysis of Subcutaneous, Visceral, and Abdominal Adipose Tissues of Beef Cattle

Huijiang Gao, Junya Li, Lupei Zhang, 2022, Genes.

Comparative Transcriptomic Analysis Reveals Diverse Expression Pattern Underlying Fatty Acid Composition among Different Beef Cuts

Huijiang Gao, Junya Li, Lupei Zhang, 2022, Foods.

Diversity of copy number variation in a worldwide population of sheep.

Li Li, Hongping Zhang, J. Kijas, 2017, Genomics.

MAK: a machine learning framework improved genomic prediction via multi-target ensemble regressor chains and automatic selection of assistant traits

Huijiang Gao, Junya Li, Lupei Zhang, 2023, Briefings Bioinform..

Genomic predictions combining SNP markers and copy number variations in Nellore cattle

D. Bickhart, Li Ma, R. Carvalheiro, 2018, BMC Genomics.

Genome-wide scanning reveals genetic diversity and signatures of selection in Chinese indigenous cattle breeds

Yong Zhang, Huijiang Gao, Junya Li, 2018, Livestock Science.

Genetic assessment of inbred chicken lines indicates genomic signatures of resistance to Marek’s disease

Hans H. Cheng, Jiuzhou Z. Song, Yi Ding, 2018, Journal of Animal Science and Biotechnology.

Genomic predictions combining SNP markers and copy number variations in Nellore cattle

D. Bickhart, Li Ma, R. Carvalheiro, 2018, BMC Genomics.

Reduced representation bisulphite sequencing of ten bovine somatic tissues reveals DNA methylation patterns and their impacts on gene expression

Hong Chen, D. Bickhart, C. V. Van Tassell, 2016, BMC Genomics.

Identifying Candidate Genes for Litter Size and Three Morphological Traits in Youzhou Dark Goats Based on Genome-Wide SNP Markers

J. Li, H. Ren, Lingyang Xu, 2023, Genes.

Genome-wide assessment of genetic diversity and population structure insights into admixture and introgression in Chinese indigenous cattle

Jiabao Zhang, Huijiang Gao, Junya Li, 2018, BMC Genetics.

Genome wide association study identifies SNPs associated with fatty acid composition in Chinese Wagyu cattle

Lei Xu, Huijiang Gao, Junya Li, 2019, Journal of Animal Science and Biotechnology.

Probe-based association analysis identifies several deletions associated with average daily gain in beef cattle

Huijiang Gao, Junya Li, Lupei Zhang, 2019, BMC Genomics.

Genome-wide CNV analysis reveals variants associated with growth traits in Bos indicus

D. Bickhart, B. Rosen, C. V. Van Tassell, 2016, BMC Genomics.

Characterization of Chromatin Accessibility in Fetal Bovine Chondrocytes

Huijiang Gao, Junya Li, Lupei Zhang, 2023, Animals : an open access journal from MDPI.

The eQTL colocalization and transcriptome-wide association study identify potentially causal genes responsible for economic traits in Simmental beef cattle

Huijiang Gao, Junya Li, Jiuzhou Z. Song, 2023, Journal of Animal Science and Biotechnology.

Integrating genomics and transcriptomics to identify candidate genes for subcutaneous fat deposition in beef cattle.

Huijiang Gao, Junya Li, Lupei Zhang, 2022, Genomics.

Genome-wide scan reveals genetic divergence and diverse adaptive selection in Chinese local cattle

Huijiang Gao, Junya Li, Lupei Zhang, 2019, BMC Genomics.

Genome-wide association study identifies the PLAG1-OXR1 region on BTA14 for carcass meat yield in cattle.

Huijiang Gao, Junya Li, Lupei Zhang, 2019, Physiological genomics.

Genomic Prediction Using LD-Based Haplotypes Inferred From High-Density Chip and Imputed Sequence Variants in Chinese Simmental Beef Cattle

Lei Xu, Huijiang Gao, Junya Li, 2021, Frontiers in Genetics.

CNV Analysis of Host Responses to Porcine Reproductive and Respiratory Syndrome Virus Infection

J. Lunney, Igseo Choi, Lingyang Xu, 2017, Journal of genomics.

Analysis of Population-Genetic Properties of Copy Number Variations.

D. Bickhart, Junya Li, Liu Yang, 2018, Methods in molecular biology.

Multi‐trait genomic predictions using GBLUP and Bayesian mixture prior model in beef cattle

Lei Xu, Junya Li, Lingyang Xu, 2023, Animal Research and One Health.

Fast genomic prediction of breeding values using parallel Markov chain Monte Carlo with convergence diagnosis

Bo Zhu, Xue Gao, Xiaolin Wu, 2018, BMC Bioinformatics.

Genome-Wide Association Study Reveals the PLAG1 Gene for Knuckle, Biceps and Shank Weight in Simmental Beef Cattle

Huijiang Gao, Junya Li, Lupei Zhang, 2016, PloS one.

Genomic signatures reveal new evidences for selection of important traits in domestic cattle.

Steven G. Schroeder, D. Bickhart, S. Schroeder, 2015, Molecular biology and evolution.

A genome-wide survey reveals a deletion polymorphism associated with resistance to gastrointestinal nematodes in Angus cattle

D. Bickhart, T. Sonstegard, C. Tassell, 2014, Functional & Integrative Genomics.

Genome-wide association studies using binned genotypes

Shizhong Xu, Huijiang Gao, Junya Li, 2019, Heredity.

Genetic Association Analysis of Copy Number Variations for Meat Quality in Beef Cattle

Huijiang Gao, Junya Li, Lupei Zhang, 2023, Foods.

Genetic Origin and Introgression Pattern of Pingliang Red Cattle Revealed Using Genome-Wide SNP Analyses

Huijiang Gao, Junya Li, Lupei Zhang, 2023, Genes.

Transcriptomic analysis reveals diverse expression patterns underlying the fiber diameter of oxidative and glycolytic skeletal muscles in steers.

Huijiang Gao, Lupei Zhang, Lingyang Xu, 2023, Meat science.

Evaluation of Linear Programming and Optimal Contribution Selection Approaches for Long-Term Selection on Beef Cattle Breeding

Huijiang Gao, Junya Li, Lingyang Xu, 2023, Biology.

Genome-Wide Detection of Copy Number Variations and Their Potential Association with Carcass and Meat Quality Traits in Pingliang Red Cattle

Huijiang Gao, Junya Li, Lupei Zhang, 2024, International Journal of Molecular Sciences.

A genome-wide association study suggests several novel candidate genes for carcass traits in Chinese Simmental beef cattle.

Y. Chen, Huijiang Gao, Junya Li, 2018, Animal genetics.

Improving Genomic Predictions in Multi-Breed Cattle Populations: A Comparative Analysis of BayesR and GBLUP Models

Huijiang Gao, Lupei Zhang, Lingyang Xu, 2024, Genes.

Transcriptome Analysis of Compensatory Growth and Meat Quality Alteration after Varied Restricted Feeding Conditions in Beef Cattle

Huijiang Gao, Junya Li, Lupei Zhang, 2024, International journal of molecular sciences.

Multimarker and rare variants genomewide association studies for bone weight in Simmental cattle

Y. Chen, Huijiang Gao, Junya Li, 2018, Journal of animal breeding and genetics = Zeitschrift fur Tierzuchtung und Zuchtungsbiologie.

Genome-Wide Association Analysis of Reproductive Traits in Chinese Holstein Cattle

Lingyang Xu, Jiashuang Liu, Xiangbin Ding, 2023, Genes.

Genome-wide association study reveals candidate genes associated with body measurement traits in Chinese Wagyu beef cattle.

Y. Chen, Huijiang Gao, X. Wang, 2019, Animal genetics.

Genome-Wide Gene–Environment Interaction Analysis Identifies Novel Candidate Variants for Growth Traits in Beef Cattle

Huijiang Gao, Junya Li, Lupei Zhang, 2024, Animals : an Open Access Journal from MDPI.

The Impact of Variable Degrees of Freedom and Scale Parameters in Bayesian Methods for Genomic Prediction in Chinese Simmental Beef Cattle

Hong Niu, Bo Zhu, Xue Gao, 2016, PloS one.