Hiromitsu Shimoyama

发表

Community‐wide evaluation of methods for predicting the effect of mutations on protein–protein interactions

Julie C. Mitchell, Jeffrey J. Gray, Z. Weng, 2013, Proteins.

Atomistic detailed free‐energy landscape of intrinsically disordered protein studied by multi‐scale divide‐and‐conquer molecular dynamics simulation

Hiromitsu Shimoyama, Yasushige Yonezawa, Y. Yonezawa, 2020, J. Comput. Chem..

Multicanonical molecular dynamics simulations combined with Metadynamics for the free energy landscape of a biomolecular system with high energy barriers

Haruki Nakamura, Yasushige Yonezawa, Hiromitsu Shimoyama, 2011 .

Residue–residue interactions regulating the Ca2+-induced EF-hand conformation changes in calmodulin

Hiromitsu Shimoyama, Mayuko Takeda-Shitaka, 2017, Journal of biochemistry.

A Free-Energy Landscape Analysis of Calmodulin Obtained from an NMR Data-Utilized Multi-Scale Divide-and-Conquer Molecular Dynamics Simulation

Y. Shigeta, Hiromitsu Shimoyama, 2021, Life.

A structural comparison of ‘real’ and ‘model’ calmodulin clarified allosteric interactions regulating domain motion

Hiromitsu Shimoyama, 2019, Journal of biomolecular structure & dynamics.

Experimental and theoretical study on converting myoglobin into a stable domain-swapped dimer by utilizing a tight hydrogen bond network at the hinge region

S. Nagao, H. Komori, Y. Higuchi, 2021, RSC advances.

The ring strain energies of cyclopolysilanes, [R1R2Si]n (n=3−6)

Hiromitsu Shimoyama, T. Okawa, Y. Nagai, 1986 .

Free Energy Landscapes of Alanine Dipeptide in Explicit Water Reproduced by the Force-Switching Wolf Method.

Haruki Nakamura, Narutoshi Kamiya, Yasushige Yonezawa, 2011, Journal of chemical theory and computation.

Enhanced free-energy calculation using multiscale simulation.

Haruki Nakamura, Yasushige Yonezawa, Hiromitsu Shimoyama, 2010, The Journal of chemical physics.