S. Ishino

发表

New archaeal viruses discovered by metagenomic analysis of viral communities in enrichment cultures.

E. Koonin, Y. Liu, J. Kalinowski, 2019, Environmental microbiology.

A longer finger-subdomain of family A DNA polymerases found by metagenomic analysis strengthens DNA binding and primer extension abilities.

Y. Kawarabayasi, Y. Ishino, S. Ishino, 2016, Gene.

A Guanine Nucleotide Exchange Factor for Rab5 Proteins Is Essential for Intracellular Transport of the Proglutelin from the Golgi Apparatus to the Protein Storage Vacuole in Rice Endosperm1[C][W][OA]

Y. Ishino, T. Okita, T. Ueda, 2013, Plant Physiology.

Structural basis for substrate recognition and processive cleavage mechanisms of the trimeric exonuclease PhoExo I

Y. Ishino, K. Miyazono, Tomoko Ito, 2015, Nucleic acids research.

Mutation of the gene encoding the ribonuclease P RNA in the hyperthermophilic archaeon Thermococcus kodakarensis causes decreased growth rate and impaired processing of tRNA precursors.

M. Kimura, Y. Kawarabayasi, T. Nakashima, 2015, Biochemical and Biophysical Research Communications - BBRC.

Enzymatic Switching Between Archaeal DNA Polymerases Facilitates Abasic Site Bypass

Y. Ishino, Q. She, Mingxia Feng, 2021, Frontiers in Microbiology.

A well conserved archaeal B-family polymerase functions as a mismatch and lesion extender

Y. Ishino, Q. She, Mingxia Feng, 2021 .

An optimized Npro-based method for the expression and purification of intrinsically disordered proteins for an NMR study

M. Ota, S. Fukuchi, Y. Ishino, 2015, Intrinsically disordered proteins.

DJ-1 family Maillard deglycases prevent acrylamide formation.

P. Forterre, Y. Ishino, S. Ishino, 2016, Biochemical and biophysical research communications.

The archaeal DNA replication machinery: past, present and future.

Z. Kelman, Y. Ishino, S. Ishino, 2013, Genes & genetic systems.

Guanine nucleotide exchange factor 2 for Rab5 proteins coordinated with GLUP6/GEF regulates the intracellular transport of the proglutelin from the Golgi apparatus to the protein storage vacuole in rice endosperm

Y. Ishino, T. Okita, T. Ueda, 2015, Journal of experimental botany.

Comparative analyses of the two proliferating cell nuclear antigens from the hyperthermophilic archaeon, Thermococcus kodakarensis

H. Daiyasu, Y. Ishino, H. Atomi, 2012, Genes to cells : devoted to molecular & cellular mechanisms.

Studies on the base excision repair (BER) complex in Pyrococcus furiosus.

Y. Ishino, T. Shirai, S. Ishino, 2009, Biochemical Society transactions.

DNA Polymerases BI and D from the Hyperthermophilic Archaeon Pyrococcus furiosus Both Bind to Proliferating Cell Nuclear Antigen with Their C-Terminal PIP-Box Motifs

Y. Ishino, S. Ishino, K. Tori, 2007, Journal of bacteriology.

The clamp-loading complex for processive DNA replication

Y. Ishino, K. Morikawa, S. Ishino, 2004, Nature Structural &Molecular Biology.

Two Family B DNA Polymerases From Aeropyrum pernix, Based on Revised Translational Frames

Y. Ishino, S. Nagumo, K. Daimon, 2018, Front. Mol. Biosci..

Biochemical and genetical analyses of the three mcm genes from the hyperthermophilic archaeon, Thermococcus kodakarensis

H. Daiyasu, Y. Ishino, H. Atomi, 2011, Genes to cells : devoted to molecular & cellular mechanisms.

The GINS complex from the thermophilic archaeon, Thermoplasma acidophilum may function as a homotetramer in DNA replication

Y. Ishino, A. Yamagishi, N. Birkeland, 2011, Extremophiles.

Control of enzyme reaction by a designed metal-ion-dependent α-helical coiled-coil protein

Y. Ishino, S. Ishino, Toshiki Tanaka, 2012, JBIC Journal of Biological Inorganic Chemistry.

The replication machinery of LUCA: common origin of DNA replication and transcription

E. Koonin, Y. Ishino, M. Krupovic, 2020, BMC Biology.

Archaeal DNA Polymerase-B as a DNA Template Guardian: Links between Polymerases and Base/Alternative Excision Repair Enzymes in Handling the Deaminated Bases Uracil and Hypoxanthine

Y. Ishino, B. Connolly, S. Ishino, 2016, Archaea.

A Well-Conserved Archaeal B-Family Polymerase Functions as an Extender in Translesion Synthesis

Y. Ishino, Q. She, Mingxia Feng, 2022, mBio.

DNA polymerases as useful reagents for biotechnology – the history of developmental research in the field

Y. Ishino, S. Ishino, Yoshizumi Ishino, 2014, Front. Microbiol..

Identification of a mismatch-specific endonuclease in hyperthermophilic Archaea

Y. Ishino, T. Shirai, S. Ishino, 2016, Nucleic acids research.

Two conformations of DNA polymerase D-PCNA-DNA, an archaeal replisome complex, revealed by cryo-electron microscopy

D. Kohda, Y. Ishino, K. Morikawa, 2020, BMC biology.

The mesophilic archaeon Methanosarcina acetivorans counteracts uracil in DNA with multiple enzymes: EndoQ, ExoIII, and UDG

Y. Ishino, I. Cann, S. Ishino, 2018, Scientific Reports.

DNA polymerase D temporarily connects primase to the CMG-like helicase before interacting with proliferating cell nuclear antigen

Y. Ishino, T. Shirai, S. Ishino, 2021, Nucleic acids research.

Structural basis for substrate recognition and processive cleavage mechanisms of the trimeric exonuclease

Y. Ishino, K. Miyazono, Tomoko Ito, 2015 .

Structure of the EndoMS-DNA Complex as Mismatch Restriction Endonuclease.

Y. Ishino, A. Hijikata, T. Tsuji, 2016, Structure.

Replication protein A complex in Thermococcus kodakarensis interacts with DNA polymerases and helps their effective strand synthesis

Y. Ishino, S. Ishino, T. Yamagami, 2019, Bioscience, biotechnology, and biochemistry.

Biochemical characterization of endonuclease V from the hyperthermophilic archaeon, Pyrococcus furiosus.

Y. Ishino, S. Ishino, Yuriko Egashira, 2014, Journal of biochemistry.

The Endo V homologue from the hyperthermophilic euryarchaeon , Pyrococcus furiosus ( PfuEndoV

Y. Ishino, S. Ishino, Yuriko Egashira, 2014 .

Biochemical properties and base excision repair complex formation of apurinic/apyrimidinic endonuclease from Pyrococcus furiosus

Y. Ishino, T. Shirai, S. Iwai, 2009, Nucleic acids research.

Crystal structure of the novel lesion-specific endonuclease PfuEndoQ from Pyrococcus furiosus

Y. Ishino, K. Miyazono, Tomoko Ito, 2018, Nucleic acids research.

A functional endonuclease Q exists in the bacterial domain: identification and characterization of endonuclease Q from Bacillus pumilus

Y. Ishino, I. Cann, S. Ishino, 2017, Bioscience, biotechnology, and biochemistry.

PCNA is involved in the EndoQ-mediated DNA repair process in Thermococcales

Y. Ishino, I. Cann, Kotaro Yoshida, 2016, Scientific Reports.

EndoQ and EndoV work individually for damaged DNA base repair in Pyrococcus furiosus.

Y. Ishino, S. Ishino, T. Yamagami, 2015, Biochimie.

A novel endonuclease that may be responsible for damaged DNA base repair in Pyrococcus furiosus

Y. Ishino, S. Ishino, T. Yamagami, 2015, Nucleic acids research.

Activation of the mismatch-specific endonuclease EndoMS/NucS by the replication clamp is required for high fidelity DNA replication

Y. Ishino, H. Myllykallio, Hanae Kudo, 2018, Nucleic acids research.

Genetic analysis of DNA repair in the hyperthermophilic archaeon, Thermococcus kodakaraensis.

P. Forterre, Y. Ishino, R. Fujikane, 2010, Genes & genetic systems.

Switch of the interactions between the ribosomal stalk and EF1A in the GTP- and GDP-bound conformations

Y. Ishino, T. Uchiumi, K. Maruyama, 2019, Scientific Reports.

Architectures of archaeal GINS complexes, essential DNA replication initiation factors

Y. Ishino, K. Morikawa, T. Shirai, 2011, BMC Biology.

Title Effects of C-terminal Truncation of Chaperonin GroEL on the Yield of In-cage Folding of the Green Fluorescent Protein

H. Taguchi, K. Matsuzaki, Y. Kawata, 2016 .

Effects of C-terminal Truncation of Chaperonin GroEL on the Yield of In-cage Folding of the Green Fluorescent Protein*

H. Taguchi, K. Matsuzaki, Y. Kawata, 2015, The Journal of Biological Chemistry.

Evaluation of the stability of an SR398/GroES chaperonin complex.

T. Ikegami, K. Matsuzaki, Y. Kawata, 2014, Journal of biochemistry.

A novel ribosome-dimerization protein found in the hyperthermophilic archaeon Pyrococcus furiosus using ribosome-associated proteomics.

T. Uchiumi, S. Ishino, Kosuke Ito, 2022, Biochemical and biophysical research communications.

Two Family B DNA Polymerases from Aeropyrum pernix, an Aerobic Hyperthermophilic Crenarchaeote

Y. Ishino, N. Nomura, Y. Sako, 1999, Journal of bacteriology.

Atomic structure of the clamp loader small subunit from Pyrococcus furiosus.

Y. Ishino, K. Morikawa, I. Cann, 2001, Molecular cell.

The RecJ2 protein in the thermophilic archaeon Thermoplasma acidophilum is a 3′-5′ exonuclease that associates with a DNA replication complex

D. Kohda, Y. Ishino, S. Ishino, 2017, The Journal of Biological Chemistry.

Disordered interdomain region of Gins is important for functional tetramer formation to stimulate MCM helicase in Thermoplasma acidophilum

D. Kohda, Y. Ishino, S. Ishino, 2015, Bioscience, biotechnology, and biochemistry.

Activation of the MCM helicase from the thermophilic archaeon, Thermoplasma acidophilum by interactions with GINS and Cdc6-2

D. Kohda, Y. Ishino, N. Birkeland, 2014, Extremophiles.

DNA Replication in Archaea, the Third Domain of Life

Y. Ishino, S. Ishino, 2013 .

Rapid progress of DNA replication studies in Archaea, the third domain of life

Y. Ishino, S. Ishino, 2012, Science China Life Sciences.

Comprehensive Search for DNA Polymerase in the Hyperthermophilic Archaeon, Pyrococcus furiosus

Y. Ishino, S. Ishino, 2006, Nucleosides, nucleotides & nucleic acids.

Intermolecular ion pairs maintain the toroidal structure of Pyrococcus furiosus PCNA

Y. Ishino, K. Morikawa, S. Ishino, 2003, Protein science : a publication of the Protein Society.

Mutational analysis of Pyrococcus furiosus replication factor C based on the three-dimensional structure

Y. Ishino, K. Morikawa, S. Ishino, 2003, Extremophiles.

Physical interaction between proliferating cell nuclear antigen and replication factor C from Pyrococcus furiosus

Y. Ishino, K. Morikawa, S. Ishino, 2002, Genes to cells : devoted to molecular & cellular mechanisms.

The Archaeal DNA Primase

D. Kohda, K. Komori, Y. Ishino, 2001, The Journal of Biological Chemistry.

Functional interactions of an archaeal sliding clamp with mammalian clamp loader and DNA polymerase δ

Y. Ishino, I. Cann, T. Tsurimoto, 2001, Genes to cells : devoted to molecular & cellular mechanisms.

Biochemical Analysis of Replication Factor C from the Hyperthermophilic Archaeon Pyrococcus furiosus

H. Toh, H. Daiyasu, Y. Ishino, 2001, Journal of bacteriology.

New insights into the diversity and evolution of the archaeal mobilome from three complete genomes of Saccharolobus shibatae.

J. Kalinowski, Y. Ishino, K. Severinov, 2021, Environmental microbiology.

A Novel Type of Polyhedral Viruses Infecting Hyperthermophilic Archaea

Y. Liu, Y. Ishino, M. Krupovic, 2017, Journal of Virology.

Pol B, a Family B DNA Polymerase, in Thermococcus kodakarensis is Important for DNA Repair, but not DNA Replication

Y. Ishino, S. Fujiwara, T. Imanaka, 2019, Microbes and environments.

Atomic structure of an archaeal GAN suggests its dual roles as an exonuclease in DNA repair and a CMG component in DNA replication

Y. Ishino, T. Shirai, M. Kusunoki, 2016, Nucleic acids research.

Family D DNA polymerase interacts with GINS to promote CMG-helicase in the archaeal replisome

Y. Ishino, S. Ishino, T. Oyama, 2021, Nucleic acids research.

Title Possible function of the second RecJ-like protein in stalledreplication fork repair by interacting with Hef

Y. Ishino, H. Atomi, T. Kanai, 2019 .

Possible function of the second RecJ-like protein in stalled replication fork repair by interacting with Hef

Y. Ishino, H. Atomi, T. Kanai, 2017, Scientific Reports.

The Cdc45/RecJ-like protein forms a complex with GINS and MCM, and is important for DNA replication in Thermococcus kodakarensis

Y. Ishino, H. Atomi, T. Kanai, 2017, Nucleic acids research.

DNA polymerases from euryarchaeota.

Y. Ishino, S. Ishino, 2001, Methods in enzymology.

Functional Interactions of a Homolog of Proliferating Cell Nuclear Antigen with DNA Polymerases inArchaea

H. Toh, K. Komori, Y. Ishino, 1999, Journal of bacteriology.

Application of environmental DNA resources to create useful DNA polymerases with different properties

Y. Ishino, S. Ishino, 2012 .

The replication machinery of LUCA: common origin of DNA replication and transcription

E. Koonin, Y. Ishino, M. Krupovic, 2020, BMC Biology.

Identification of the critical region in replication factor C from Pyrococcus furiosus for the stable complex formation with proliferating cell nuclear antigen and DNA.

Tomoko Miyata, Y. Ishino, K. Morikawa, 2005, Genes & genetic systems.

The OsGEN-L protein from Oryza sativa possesses Holliday junction resolvase activity as well as 5'-flap endonuclease activity.

Y. Ishino, H. Satoh, S. Ishino, 2012, Journal of biochemistry.

Genetic and Biochemical Characterizations of aLhr1 Helicase in the Thermophilic Crenarchaeon Sulfolobus acidocaldarius

S. Matsumoto, Y. Ishino, N. Kurosawa, 2021, Catalysts.

Structure‐Based Mutational Study of an Archaeal DNA Ligase towards Improvement of Ligation Activity

Y. Ishino, K. Morikawa, M. Yohda, 2012, Chembiochem : a European journal of chemical biology.

A Novel Single-Strand Specific 3′–5′ Exonuclease Found in the Hyperthermophilic Archaeon, Pyrococcus furiosus

Y. Ishino, S. Ishino, K. Tori, 2013, PloS one.

Role of RadA and DNA Polymerases in Recombination-Associated DNA Synthesis in Hyperthermophilic Archaea

Y. Ishino, S. Ishino, R. Dulermo, 2020, Biomolecules.

Elucidating functions of DP1 and DP2 subunits from the Thermococcus kodakarensis family D DNA polymerase

Y. Ishino, S. Ishino, T. Yamagami, 2018, Extremophiles.

DNA polymerases and DNA ligases

Y. Ishino, S. Ishino, 2013 .

Mutations of Asp540 and the domain‐connecting residues synergistically enhance Pyrococcus furiosus DNA ligase activity

Y. Ishino, Maiko Tanabe, S. Ishino, 2014, FEBS letters.

Investigation of the clamp loading mechanism from biochemical and 3D structural perspectives

Hirofumi Suzuki, Y. Ishino, K. Morikawa, 2007 .

Exonuclease processivity of archaeal replicative DNA polymerase in association with PCNA is expedited by mismatches in DNA

Y. Ishino, T. Tsuji, T. Shirai, 2016, Scientific Reports.

Mutant Taq DNA polymerases with improved elongation ability as a useful reagent for genetic engineering

Y. Kawarabayasi, Y. Ishino, S. Ishino, 2014, Front. Microbiol..

DNA polymerases BI and D , from the hyperthermophilic archaeon , 1 Pyrococcus furiosus , both bind to PCNA with their C-terminal PIP box 2 motifs

Y. Ishino, S. Ishino, K. Tori, 2007 .

Multiple Interactions of the Intrinsically Disordered Region between the Helicase and Nuclease Domains of the Archaeal Hef Protein*

Tetsuya Mori, T. Ando, N. Kodera, 2014, The Journal of Biological Chemistry.

The effects of induced production of reactive oxygen species in organelles on endoplasmic reticulum stress and on the unfolded protein response in arabidopsis

H. Taguchi, K. Matsuzaki, Y. Kawata, 2015 .

Activation of the MCM helicase from the thermophilic archaeon, Thermoplasma acidophilum by interactions with GINS and Cdc6-2

D. Kohda, Y. Ishino, N. Birkeland, 2014, Extremophiles.

Development of a time-series shotgun metagenomics database for monitoring microbial communities at the Pacific coast of Japan

Yutaka Suzuki, T. Gojobori, K. Ikeo, 2021, Scientific Reports.

Rapid progress of DNA replication studies in Archaea, the third domain of life

Y. Ishino, S. Ishino, 2012, Science China Life Sciences.

Application of PCNA to processive PCR by reducing the stability of its ring structure

Y. Ishino, S. Ishino, A. Kawamura, 2012 .

Biophysical analysis of PCNA from Pyrococcus furiosus

Y. Ishino, S. Ishino, A. Kuwamura, 2012 .

The mesophilic archaeon Methanosarcina acetivorans counteracts uracil in DNA with multiple enzymes: EndoQ, ExoIII, and UDG

Y. Ishino, I. Cann, S. Ishino, 2018, Scientific Reports.

Direct visualization of DNA baton pass between replication factors bound to PCNA

D. Kohda, Y. Ishino, K. Morikawa, 2018, Scientific Reports.