R. Ramos

发表

PIPS: Pathogenicity Island Prediction Software

J. Baumbach, A. Tauch, E. Trost, 2012, PloS one.

Draft Genome Sequence of the Brazilian Toxic Bloom-Forming Cyanobacterium Microcystis aeruginosa Strain SPC777

M. Schneider, M. F. Fiore, D. O. Alvarenga, 2013, Genome Announcements.

MapRepeat: an approach for effective assembly of repetitive regions in prokaryotic genomes

D. Barh, P. Ghosh, V. Azevedo, 2015, Bioinformation.

GIPSy: Genomic island prediction software.

Andreas Tauch, Jan Baumbach, Vasco Azevedo, 2016, Journal of biotechnology.

Searching whole genome sequences for biochemical identification features of emerging and reemerging pathogenic Corynebacterium species

Artur Silva, V. Azevedo, L. Felicori, 2018, Functional & Integrative Genomics.

Evaluation of the Genomic Basis for Alzheimer’s and Parkinson’s Diseases

Edian F. Franco, D. Barh, P. Ghosh, 2019 .

Evaluation of the Common Molecular Basis in Alzheimer’s and Parkinson’s Diseases

Edian F. Franco, D. Barh, P. Ghosh, 2019, International journal of molecular sciences.

The Corynebacterium pseudotuberculosis in silico predicted pan-exoproteome

D. Barh, A. Miyoshi, V. Azevedo, 2012, BMC Genomics.

High-throughput sequencing of black pepper root transcriptome

D. G. Pinheiro, W. A. Silva, Artur Silva, 2012, BMC Plant Biology.

Omics profiles used to evaluate the gene expression of Exiguobacterium antarcticum B7 during cold adaptation

V. Azevedo, R. Baraúna, V. Pellizari, 2014, BMC Genomics.

Pan-Resistome Insights into the Multidrug Resistance of Acinetobacter baumannii

Khalid J. Alzahrani, D. Barh, P. Ghosh, 2020, Antibiotics.

Pan-genomic analyses of 47 complete genomes of the Rickettsia genus and prediction of new vaccine targets and virulence factors of the species

V. Azevedo, S. Tiwari, A. Jaiswal, 2021, Journal of biomolecular structure & dynamics.

Lethality Prediction for Escherichia Coli O157:H7 and Uropathogenic E. coli in Ground Chicken Treated with High Pressure Processing and Trans-Cinnamaldehyde.

S. Sheen, R. Ramos, O. J. Scullen, 2018, Journal of food science.

Genomic Characterization of Multidrug-Resistant Escherichia coli BH100 Sub-strains

D. Barh, P. Ghosh, A. Zamyatnin, 2021, Frontiers in Microbiology.

Progression of ‘OMICS’ methodologies for understanding the pathogenicity of Corynebacterium pseudotuberculosis: the Brazilian experience

A. Miyoshi, V. Azevedo, S. S. Hassan, 2013, Computational and structural biotechnology journal.

Detection of bacteriophages and cyanophages for water quality control of a water supply system in Amazônia

Artur Silva, R. Ramos, Kenny Pinheiro, 2021 .

Pan-genomic analysis of Corynebacterium amycolatum gives insights into molecular mechanisms underpinning the transition to a pathogenic phenotype

B. Brenig, Artur Silva, V. Azevedo, 2022, Frontiers in Microbiology.

Differential transcriptional profile of Corynebacterium pseudotuberculosis in response to abiotic stresses

Pablo Henrique Caracciolo Gomes de Sá, Vasco Azevedo, Anderson Miyoshi, 2014, BMC Genomics.

Next-Generation Sequencing and Data Analysis: Strategies, Tools, Pipelines and Protocols

Debmalya Barh, Vasco Azevedo, Adonney A. O. Veras, 2018 .

Efficiency of Corynebacterium pseudotuberculosis Cp31 GenomeAssembly with the Hi-Q Enzyme on an Ion Torrent PGM SequencingPlatform

V. Azevedo, Artur Silva, D. Graças, 2014 .

Evaluation of Hydrostatic High Pressure and Cold Storage Parameters for the Reduction of Campylobacter jejuni in Chicken Livers.

S. Sheen, R. Ramos, Aisha Abdul-Wakeel, 2019, Journal of food protection.

Value of a newly sequenced bacterial genome REVIEW

J. Baumbach, A. Miyoshi, V. Azevedo, 2014 .

Resistome in Lake Bolonha, Brazilian Amazon: Identification of Genes Related to Resistance to Broad-Spectrum Antibiotics

L. Seldin, D. Graças, Artur Silva, 2020, Frontiers in Microbiology.

Comprehensive whole genome and transcriptome analysis for novel diagnostics

V. Azevedo, Artur Silva, Thiago L. P. Castro, 2013 .

Compctutational identification of putative common genomic drug and vaccine targets in Mycoplasma genitalium.

D. Barh, P. Ghosh, V. Azevedo, 2021, Genomics.

reannotation of the Corynebacterium diphtheriae ncTc13129 genome as a new approach to studying gene targets connected to virulence and pathogenicity in diphtheria

A. A. Magalhães, A. Tauch, E. Trost, 2012 .

Prediction of new vaccine targets in the core genome of Corynebacterium pseudotuberculosis through omics approaches and reverse vaccinology.

V. Azevedo, Artur Silva, R. Ramos, 2019, Gene.

The pan-genome of the emerging multidrug-resistant pathogen Corynebacterium striatum

Carolina S. F. Silva, V. Azevedo, A. Mattos-Guaraldi, 2022, Functional & Integrative Genomics.

Comparative genomics of Bordetella pertussis and prediction of new vaccines and drug targets

S. Tiwari, V. Azevedo, A. Jaiswal, 2021, Journal of biomolecular structure & dynamics.

HiTaC: a Hierarchical Taxonomic Classifier for Fungal ITS Sequences

Fábio M. Miranda, V. Piro, B. Renard, 2020, bioRxiv.

Corynebacterium pathogenic species in next-generation genomic era: the use of EDGAR and PIPS software and the importance of pathogenicity islands identification in pan-genomic analyses of pathogenic species

A. Miyoshi, V. Azevedo, S. Soares, 2013 .

Analysis of quality raw data of second generation sequencers with Quality Assessment Software

Jan Baumbach, Vasco Azevedo, Artur Silva, 2011, BMC Research Notes.

Searching whole genome sequences for biochemical identification features of emerging and reemerging pathogenic Corynebacterium species

Artur Silva, V. Azevedo, L. Felicori, 2018, Functional & Integrative Genomics.

In silico prediction of conserved vaccine targets in Streptococcus agalactiae strains isolated from fish, cattle, and human samples.

D. Barh, A. Miyoshi, S. Soares, 2013, Genetics and molecular research : GMR.