M. Kamiya

发表

Facile catch and release of fullerenes using a photoresponsive molecular tube.

S. Hayashi, M. Yoshizawa, N. Kishi, 2013, Journal of the American Chemical Society.

Encounter complexes and hidden poses of kinase-inhibitor binding on the free-energy landscape

Y. Sugita, Hiraku Oshima, Suyong Re, 2019, Proceedings of the National Academy of Sciences.

Flexible selection of the solute region in replica exchange with solute tempering: Application to protein-folding simulations.

Y. Sugita, M. Kamiya, 2018, The Journal of chemical physics.

Atomistic design of microbial opsin-based blue-shifted optogenetics tools

Hideaki E. Kato, O. Nureki, A. Inutsuka, 2015, Nature Communications.

Molecular Mechanism of Wide Photoabsorption Spectral Shifts of Color Variants of Human Cellular Retinol Binding Protein II.

S. Hayashi, M. Kamiya, Cheng Cheng, 2015, Journal of the American Chemical Society.

for Neural Silencing A Blue-shifted Light-driven Proton Pump

S. Takagi, K. Ihara, H. Kandori, 2014 .

A Blue-shifted Light-driven Proton Pump for Neural Silencing*

S. Hayashi, L. Reissig, S. Takagi, 2013, The Journal of Biological Chemistry.

QM/MM Geometry Optimization on Extensive Free-Energy Surfaces for Examination of Enzymatic Reactions and Design of Novel Functional Properties of Proteins.

S. Hayashi, M. Higashi, M. Kamiya, 2017, Annual review of physical chemistry.

Use of multistate Bennett acceptance ratio method for free-energy calculations from enhanced sampling and free-energy perturbation

Y. Sugita, Jaewoon Jung, Hiraku Oshima, 2022, Biophysical Reviews.

GENESIS 1.1: A hybrid‐parallel molecular dynamics simulator with enhanced sampling algorithms on multiple computational platforms

Yasuhiro Matsunaga, Yuji Sugita, Jaewoon Jung, 2017, J. Comput. Chem..

Molecular mechanism of ATP hydrolysis in F1-ATPase revealed by molecular simulations and single-molecule observations.

Shigehiko Hayashi, Hiroyuki Noji, Yuko Ito, 2012, Journal of the American Chemical Society.

Photoactivation Intermediates of a G-Protein Coupled Receptor Rhodopsin Investigated by a Hybrid Molecular Simulation.

S. Hayashi, M. Kamiya, 2017, The journal of physical chemistry. B.

Role of the N‐Terminal Transmembrane Helix Contacts in the Activation of FGFR3

Yuji Sugita, Daisuke Matsuoka, Motoshi Kamiya, 2019, J. Comput. Chem..

Molecular Dynamics of Channelrhodopsin at the Early Stages of Channel Opening

K. Deisseroth, O. Nureki, H. Kato, 2015, PloS one.

An Atomistic Model of a Precursor State of Light-Induced Channel Opening of Channelrhodopsin

O. Nureki, N. Yoshida, S. Hayashi, 2018, Biophysical journal.

A molecular dynamics study for the structure determination of the signaling state in the photocycle of photoactive yellow protein.

M. Kamiya, I. Ohmine, 2010, The journal of physical chemistry. B.

Proton transfer and associated molecular rearrangements in the photocycle of photoactive yellow protein: role of water molecular migration on the proton transfer reaction.

S. Saito, M. Kamiya, I. Ohmine, 2007, Journal of Physical Chemistry B.

Structural and spectral characterizations of C1C2 channelrhodopsin and its mutants by molecular simulations

O. Nureki, H. Kato, S. Hayashi, 2013 .

Title Atomistic design of microbial opsin-based blue-shiftedoptogenetics tools

Hideaki E. Kato, O. Nureki, A. Yamanaka, 2018 .

Facile catch and release of fullerenes using a photoresponsive molecular tube.

S. Hayashi, M. Yoshizawa, N. Kishi, 2013, Journal of the American Chemical Society.