Junjie Chen

发表

Protein remote homology detection by combining Chou’s distance-pair pseudo amino acid composition and principal component analysis

B. Liu, Xiaolong Wang, Junjie Chen, 2015, Molecular Genetics and Genomics.

Identification of Real MicroRNA Precursors with a Pseudo Structure Status Composition Approach

B. Liu, Xiaolong Wang, K. Chou, 2015, PloS one.

An Integrative Framework for Drug Target Prediction and Repurposing

Cui Tao, Junjie Chen, Hua Xu, 2014, AMIA.

A novel attention-based peptide language model for mining dipeptidyl peptidase-IV inhibitory peptides

X. Xing, Chong Zhang, Changge Guan, 2022, bioRxiv.

A novel attention-based peptide language model for 1 mining dipeptidyl peptidase-IV inhibitory peptides

Junjie, Zheng, Haihong, 2022 .

ProtRe-CN: Protein Remote Homology Detection by Combining Classification Methods and Network Methods via Learning to Rank

B. Liu, Junjie Chen, Jiangyi Shao, 2021, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Protein remote homology detection based on bidirectional long short-term memory

Junjie Chen, Shumin Li, Bin Liu, 2017, BMC Bioinformatics.

Protein Remote Homology Detection and Fold Recognition Based on Sequence-Order Frequency Matrix

Junjie Chen, Xiaolong Wang, Bin Liu, 2017, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

A comprehensive review and comparison of different computational methods for protein remote homology detection

Junjie Chen, Xiaolong Wang, Bin Liu, 2018, Briefings Bioinform..

Pse-in-One: a web server for generating various modes of pseudo components of DNA, RNA, and protein sequences

Junjie Chen, Xiaolong Wang, Kuo-Chen Chou, 2015, Nucleic Acids Res..

Colorectal cancer drug target prediction using ontology-based inference and network analysis

Cui Tao, Junjie Chen, Hua Xu, 2015, Database J. Biol. Databases Curation.

Protein remote homology detection based on bidirectional long short-term memory

Junjie Chen, Shumin Li, Bin Liu, 2017, BMC Bioinformatics.

iMiRNA-SSF: Improving the Identification of MicroRNA Precursors by Combining Negative Sets with Different Distributions

Junjie Chen, Xiaolong Wang, Bin Liu, 2016, Scientific Reports.

Protein remote homology detection by combining Chou’s distance-pair pseudo amino acid composition and principal component analysis

Xiaolong Wang, Junjie Chen, Bin Liu, 2015, Molecular Genetics and Genomics.

A BERT-Based Generation Model to Transform Medical Texts to SQL Queries for Electronic Medical Records: Model Development and Validation

Qingcai Chen, Xiaolong Wang, Yang Xiang, 2021, JMIR medical informatics.

dRHP-PseRA: detecting remote homology proteins using profile-based pseudo protein sequence and rank aggregation

Ren Long, Junjie Chen, Kuo-Chen Chou, 2016, Scientific Reports.

Application of learning to rank to protein remote homology detection

Junjie Chen, Xiaolong Wang, Bin Liu, 2015, Bioinform..

miRNA-dis: microRNA precursor identification based on distance structure status pairs.

Xiaolong Wang, Bin Liu, Longyun Fang, 2015, Molecular bioSystems.

CFAGO: cross-fusion of network and attributes based on attention mechanism for protein function prediction

Bin Liu, Junjie Chen, Xiaopeng Jin, 2023, Bioinform..

iEnhancer-ELM: improve enhancer identification by extracting position-related multiscale contextual information based on enhancer language models

Qingcai Chen, Jiawei Luo, Junjie Chen, 2023, Bioinformatics advances.

iEnhancer-ELM: improve enhancer identification by extracting position-related multiscale contextual information based on enhancer language models

Qingcai Chen, Jiawei Luo, Junjie Chen, 2022, Bioinformatics advances.

iEnhancer-ELM: Improve Enhancer Identification by Extracting Multi-scale Contextual Information based on Enhancer Language Models

Qingcai Chen, Jiawei Luo, Junjie Chen, 2022, ArXiv.

Discovery of novel multi-functional peptides by using protein language models and graph-based deep learning

Bin Liu, Yang Zhang, Jiawei Luo, 2023, bioRxiv.

Exploration of DPP-IV inhibitory peptide design rules assisted by deep learning pipeline that identifies restriction enzyme cutting site

Chong Zhang, Changge Guan, N. Yamamoto, 2023, bioRxiv.

Discovery of novel multi-functional peptides by using protein language models and graph-based deep learning

Bin Liu, Yang Zhang, Jiawei Luo, 2023, bioRxiv.

A Steric-Hindrance-Induced Weakly Solvating Electrolyte Boosting the Cycling Performance of a Micrometer-Sized Silicon Anode

T. Zhao, Yiju Li, B. Liu, 2023, ACS Energy Letters.

Protein Remote Homology Detection Based on an Ensemble Learning Approach

Junjie Chen, Dong Huang, Bingquan Liu, 2016, BioMed research international.

An artificial interfacial layer with biomimetic ionic channels towards highly stable Li metal anodes.

T. Zhao, Yiju Li, B. Liu, 2023, Science bulletin.