Elizabeth Purdom

发表

Bioconductor workflow for single-cell RNA sequencing: Normalization, dimensionality reduction, clustering, and lineage inference

Sandrine Dudoit, Davide Risso, Fanny Perraudeau, 2017, F1000Research.

Can We Trust the Bootstrap in High-dimensions? The Case of Linear Models

Noureddine El Karoui, Elizabeth Purdom, E. Purdom, 2018, J. Mach. Learn. Res..

clusterExperiment and RSEC: A Bioconductor package and framework for clustering of single-cell and other large gene expression datasets

Sandrine Dudoit, Davide Risso, Elizabeth Purdom, 2018 .

Improving replicability in single-cell RNA-Seq cell type discovery with Dune

Sandrine Dudoit, Davide Risso, Jesse Gillis, 2020, bioRxiv.

Analysis of a data matrix and a graph: Metagenomic data and the phylogenetic tree

Elizabeth Purdom, E. Purdom, 2011, 1202.5880.

MethCP: Differentially Methylated Region Detection with Change Point Models

Elizabeth Purdom, Boying Gong, E. Purdom, 2018, bioRxiv.

mbkmeans: Fast clustering for single cell data using mini-batch k-means

Stephanie C. Hicks, Davide Risso, Elizabeth Purdom, 2020, bioRxiv.

The non-parametric bootstrap and spectral analysis in moderate and high-dimension

Noureddine El Karoui, Elizabeth Purdom, E. Purdom, 2019, AISTATS.

Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments

Sandrine Dudoit, James H. Bullard, Elizabeth Purdom, 2010, BMC Bioinformatics.

Performance Assessment and Selection of Normalization Procedures for Single-Cell RNA-Seq

Sandrine Dudoit, Nir Yosef, Davide Risso, 2017 .

Performance Assessment and Selection of Normalization Procedures for Single-Cell RNA-Seq.

Sandrine Dudoit, Nir Yosef, Davide Risso, 2019, Cell systems.

clusterExperiment and RSEC: A Bioconductor package and framework for clustering of single-cell and other large gene expression datasets

Sandrine Dudoit, Davide Risso, Elizabeth Purdom, 2018, bioRxiv.

Methods and challenges in timing chromosomal abnormalities within cancer samples

Paul T. Spellman, Christine Ho, Elizabeth Purdom, 2013, Bioinform..

Unifying Gene Expression Measures from Multiple Platforms Using Factor Analysis

Terence P. Speed, Paul T. Spellman, Xin Victoria Wang, 2011, PloS one.

Integrated Genomic Analysis Identifies Clinically Relevant Subtypes of Glioblastoma Characterized by Abnormalities in PDGFRA , IDH 1 , EGFR , and NF 1 Citation Verhaak

Yuan Qi, Jill P. Mesirov, Li Ding, 2010 .

Slingshot: Cell lineage and pseudotime inference for single-cell transcriptomics

Sandrine Dudoit, Nir Yosef, Davide Risso, 2017 .

Phylogenetic analyses of melanoma reveal complex patterns of metastatic dissemination

Nam Huh, Lauren E Haydu, Elizabeth Purdom, 2015, Proceedings of the National Academy of Sciences.

Transcription restores DNA repair to heterochromatin, determining regional mutation rates in cancer genomes.

Nam Huh, Elizabeth Purdom, Andrew J Blumberg, 2014, Cell reports.

Clustering of mRNA‐Seq data based on alternative splicing patterns

Elizabeth Purdom, E. Purdom, Marla Johnson, 2017, Biostatistics.

Exon-Level Microarray Analyses Identify Alternative Splicing Programs in Breast Cancer

Lior Pachter, Zhi Hu, Bahram Parvin, 2010, Molecular Cancer Research.

Temporal dissection of tumorigenesis in primary cancers.

Jian Li, Lars Bolund, Nam Huh, 2011, Cancer discovery.