J. Coolon

发表

Sources of bias in measures of allele-specific expression derived from RNA-seq data aligned to a single reference genome

P. Wittkopp, K. Stevenson, J. Coolon, 2013, BMC Genomics.

Genomic imprinting absent in Drosophila melanogaster adult females.

P. Wittkopp, B. Graveley, C. J. McManus, 2012, Cell reports.

Genomics Analysis of L-DOPA Exposure in Drosophila sechellia

J. Coolon, S. M. Gregory, S. Lanno, 2019, G3: Genes, Genomes, Genetics.

Long-Term Nitrogen Amendment Alters the Diversity and Assemblage of Soil Bacterial Communities in Tallgrass Prairie

Kenneth L. Jones, J. Blair, M. Herman, 2013, PloS one.

Evolutionary Dynamics of Regulatory Changes Underlying Gene Expression Divergence among Saccharomyces Species

P. Wittkopp, J. Coolon, Brian P. H. Metzger, 2017, Genome biology and evolution.

Sex-Specific Effects of Cis-Regulatory Variants in Drosophila melanogaster

P. Wittkopp, J. Coolon, William Webb, 2013, Genetics.

Mask, a component of the hippo pathway, is required for Drosophila eye morphogenesis.

Ruth I. Johnson, J. Coolon, Miles W DeAngelis, 2020, Developmental biology.

Molecular approach for assessing responses of microbial‐feeding nematodes to burning and chronic nitrogen enrichment in a native grassland

J. Blair, M. Herman, J. Coolon, 2006, Molecular ecology.

The roles of cis- and trans-regulation in the evolution of regulatory incompatibilities and sexually dimorphic gene expression

D. Hartl, C. Meiklejohn, P. Wittkopp, 2014, Genome research.

cis‐ and trans‐Regulation in Drosophila Interspecific Hybrids

P. Wittkopp, J. Coolon, 2013 .

incompatibilities and sexually dimorphic gene expression-regulation in the evolution of regulatory trans-and cis The roles of Material Supplemental

D. Hartl, C. Meiklejohn, P. Wittkopp, 2013 .

Regulatory divergence in Drosophila revealed by mRNA-seq.

C Joel McManus, Michael O Duff, Brenton R Graveley, 2010, Genome research.

revealed by mRNA-seq Drosophila Regulatory divergence in Material Supplemental

P. Wittkopp, B. Graveley, J. Eipper-Mains, 2010 .

OsirisGenes and Insect Adaptive Evolution

Chris C. R. Smith, J. Coolon, S. Lanno, 2019, eLS.

Molecular Mechanisms and Evolutionary Processes Contributing to Accelerated Divergence of Gene Expression on the Drosophila X Chromosome.

P. Wittkopp, B. Graveley, C. J. McManus, 2015, Molecular biology and evolution.

Comparative transcriptome analyses of the Drosophila pupal eye

Ruth I. Johnson, J. Coolon, Miles W DeAngelis, 2020, G3.

Tempo and mode of regulatory evolution in Drosophila

P. Wittkopp, B. Graveley, C. J. McManus, 2014, Genome research.

Derived esterase activity in Drosophila sechellia contributes to evolved octanoic acid resistance

J. Coolon, S. Lanno, 2019, Insect molecular biology.

Genetic basis of octanoic acid resistance in Drosophila sechellia: functional analysis of a fine‐mapped region

P. Wittkopp, J. Auerbach, J. Coolon, 2017, Molecular ecology.

Ecological Genomics of Nematode Community Interactions: Model and Non-model Approaches

M. Herman, J. Coolon, T. Todd, 2009 .

Caenorhabditis elegans Genomic Response to Soil Bacteria Predicts Environment-Specific Genetic Effects on Life History Traits

Kenneth L. Jones, M. Herman, J. Coolon, 2009, PLoS genetics.

Investigating the role of Osiris genes in Drosophila sechellia larval resistance to a host plant toxin

J. Coolon, S. Lanno, S. C. Linde, 2019, Ecology and evolution.

Evolution of splicing regulatory networks in Drosophila

P. Wittkopp, B. Graveley, C. J. McManus, 2014, Genome research.

Corrigendum: Tempo and mode of regulatory evolution in Drosophila.

P. Wittkopp, B. Graveley, C. J. McManus, 2018, Genome research.

Drosophila Evolution of splicing regulatory networks in Material Supplemental

P. Wittkopp, B. Graveley, C. J. McManus, 2014 .

Drosophila Evolution of splicing regulatory networks in P < P

P. Wittkopp, B. Graveley, J. Eipper-Mains, 2014 .

Ecological genomics of nematode responses to different bacterial environments

J. Coolon, 2008 .

Genome‐wide effect of tetracycline, doxycycline and 4‐epidoxycycline on gene expression in Saccharomyces cerevisiae

J. Coolon, S. C. Linde, G. Sánchez, 2020, Yeast.

Microbial ecological response of the intestinal flora of Peromyscus maniculatus and P. leucopus to heavy metal contamination

S. Wisely, S. Narayanan, J. Coolon, 2010, Molecular ecology.

Transcriptomic Analysis of Octanoic Acid Response in Drosophila sechellia Using RNA-Sequencing

J. Coolon, S. M. Gregory, S. Lanno, 2017, G3: Genes, Genomes, Genetics.

Genomics analysis of Drosophila sechellia response to Morinda citrifolia fruit diet

A. Arkin, J. Coolon, E. McGhie, 2021, bioRxiv.

Genome-wide gene expression responses to experimental manipulation of Saccharomyces cerevisiae repressor activator protein 1 (Rap1) expression level

M. Fatima, W. Lee, J. Coolon, 2023, Genomics.

Analysis of cytochrome P450 contribution to evolved plant toxin resistance in Drosophila sechellia

J. Coolon, S. Lanno, S. Shimshak, 2017, Insect molecular biology.

The Faculty

Karen L. Collins, Barbara J. Juhasz, Nancy F. Campbell, 2018, Routledge Library Editions: Communication Studies.

Supporting Online Material Materials and Methods Figures S1 to S9 Tables S1 to S3 References Rnai in Budding Yeast

Jeffrey P. Mower, D. Bartel, G. Fink, 2022 .

Genomics analysis of hexanoic acid exposure in Drosophila species

S. Karolczak, J. Coolon, H. Karimi, 2021, bioRxiv.

The relative impact of parental and current environment on plant transcriptomes depends on type of stress and genotype

S. Sultan, J. Coolon, Nathalie Feiner, 2023, Proceedings of the Royal Society B.

Reliable estimates of allele-specific expression derived from RNA-seq data aligned to a single reference genome

P. Wittkopp, K. Stevenson, J. Coolon, 2013 .

Mask, a component of the hippo pathway, is required for Drosophila eye morphogenesis.

Ruth I. Johnson, J. Coolon, Emily W. McGhie, 2020, Developmental biology.