P. Chalise

发表

Integrated genomic and molecular characterization of cervical cancer

Steven J. M. Jones, Christopher A. Miller, Richard A. Moore, 2017, Nature.

Nested cross-validation with ensemble feature selection and classification model for high-dimensional biological data

P. Chalise, Yi Zhong, Jianghua He, 2020, Commun. Stat. Simul. Comput..

Nested and Repeated Cross Validation for Classification Model With High-Dimensional Data

P. Chalise, Yi Zhong, Jianghua He, 2020 .

Integrative clustering methods for high-dimensional molecular data.

B. Fridley, D. Koestler, P. Chalise, 2014, Translational cancer research.

Marker-Negative Pheochromocytoma Associated with Inferior Vena Cava Thrombosis

P. Chalise, P. Gyawali, S. Poudyal, 2017, Case reports in urology.

Niraparib in metastatic pancreatic cancer after previous chemotherapy (NIRA-PANC): A phase 2 trial.

S. Soper, A. Godwin, M. Witek, 2019, Journal of Clinical Oncology.

Time scales in epidemiological analysis

P. Chalise, 2009 .

Extracellular vesicle‐mediated endothelial apoptosis and EV‐associated proteins correlate with COVID‐19 disease severity

B. Krishnamachary, P. Chalise, N. Dhillon, 2021, Journal of extracellular vesicles.

The Potential Role of Extracellular Vesicles in COVID-19 Associated Endothelial injury and Pro-inflammation

B. Krishnamachary, P. Chalise, N. Dhillon, 2020, medRxiv.

O-GlcNAc-Dependent Regulation of Progesterone Receptor Function in Breast Cancer

R. Madan, C. D’Santos, C. Slawson, 2018, Hormones and Cancer.

C57BL/6 Substrains Exhibit Different Responses to Acute Carbon Tetrachloride Exposure: Implications for Work Involving Transgenic Mice.

Katie Dennis, P. Chalise, F. Duncan, 2017, Gene expression.

Sedation and Analgesia During Pediatric Burn Dressing Change: A Survey of American Burn Association Centers.

H. Ganatra, P. Chalise, A. Kovac, 2019, Journal of burn care & research : official publication of the American Burn Association.

Time Scales in Epidemiological Analysis: An Empirical Comparison

D. McGee, E. Chicken, P. Chalise, 2015, 1502.02534.

ArticleEvolutionary analysis of Severe Acute Respiratory Syndrome Coronavirus

Jeffery A. Thompson, D. Koestler, Richard Meier, 2020 .

Analysis of lncRNA-miRNA-mRNA Interactions in Hyper-proliferative Human Pulmonary Arterial Smooth Muscle Cells

S. Gunewardena, P. Chalise, N. Dhillon, 2019, Scientific Reports.

TGF-Î²1 in extracellular vesicles from HIV-infected plasma and macrophages linked to cardiopulmonary dysfunction

B. Krishnamachary, S. Agarwal, A. Morris, 2020, medRxiv.

Influences of Gastrointestinal Microbiota Dysbiosis on Serum Proinflammatory Markers in Epithelial Ovarian Cancer Development and Progression

P. Chalise, J. Pierce, Diane E Mahoney, 2022, Cancers.

Extracellular Vesicle TGF- b 1 Is Linked to Cardiopulmonary Dysfunction in Human Immunodeficiency Virus

B. Krishnamachary, S. Agarwal, P. Hsue, 2021 .

Challenging the Vestibular System Affects Gait Speed and Cognitive Workload in Chronic Mild Traumatic Brain Injury and Healthy Adults

H. Devos, P. Chalise, L. D'Silva, 2022, Frontiers in Neurology.

A Mitochondrial DNA Haplogroup Defines Patterns of Five-Year Cognitive Change.

J. Pa, R. Swerdlow, S. Andrews, 2022, Journal of Alzheimer's disease : JAD.

Integration of differential expression and network structure for 'omics data analysis

P. Chalise, Jianghua He, Yonghui Ni, 2022, Comput. Biol. Medicine.

Persistent Presence of Spike protein and Viral RNA in the Circulation of Individuals with Post-Acute Sequelae of COVID-19

P. Chalise, N. Dhillon, L. Spikes, 2022, medRxiv.

DREAM Community. Prediction of overall survival for patients with metastatic castration-resistant prostate cancer: development of a prognostic model through a crowdsourced challenge with open clinical trial

Stephen R. Piccolo, Suleiman A. Khan, Luke N. Kumar, 2016 .

Assessing equivalent and inverse change in genes between diverse experiments

D. Koestler, P. Chalise, D. Pei, 2021, Frontiers in Bioinformatics.

Perioperative Immunonutrition Modulates Inflammatory Response after Radical Cystectomy: Results of a Pilot Randomized Controlled Clinical Trial

S. Carlson, J. Holzbeierlein, P. Chalise, 2018, The Journal of urology.

Effects of Immunonutrition for Cystectomy on Immune Response and Infection Rates: A Pilot Randomized Controlled Clinical Trial.

J. Holzbeierlein, P. Chalise, Eugene K Lee, 2016, European urology.

Assessing accuracy of Weibull shape parameter estimate from historical studies for subsequent sample size calculation in clinical trials with time-to-event outcome

P. Chalise, Palash Sharma, M. Phadnis, 2020, Contemporary clinical trials communications.

Integrative clustering of multi-level ‘omic data based on non-negative matrix factorization algorithm

Brooke L. Fridley, Prabhakar Chalise, B. Fridley, 2017, PloS one.

Progesterone Receptor Attenuates STAT1-Mediated IFN Signaling in Breast Cancer

J. Carroll, V. Jin, R. Madan, 2019, The Journal of Immunology.

Genetic Association Studies of Copy-Number Variation: Should Assignment of Copy Number States Precede Testing?

Brooke L. Fridley, Liewei Wang, Patrick Breheny, 2012, PloS one.

Effect of Bazedoxifene and Conjugated Estrogen (Duavee) on Breast Cancer Risk Biomarkers in High-Risk Women: A Pilot Study

C. Zalles, B. Kimler, C. Fabian, 2019, Cancer Prevention Research.

Network-based integrative clustering of multiple types of genomic data using non-negative matrix factorization

Prabhakar Chalise, Brooke L Fridley, Yonghui Ni, 2020, Comput. Biol. Medicine.

Persistent circulation of soluble and extracellular vesicle‐linked Spike protein in individuals with postacute sequelae of COVID‐19

B. Krishnamachary, P. Chalise, A. Mahajan, 2023, Journal of medical virology.

Germline Copy Number Variation and Ovarian Cancer Survival

R. Vierkant, T. Sellers, Y. Asmann, 2012, Front. Gene..

Randomized Phase IIB Trial of the Lignan Secoisolariciresinol Diglucoside in Premenopausal Women at Increased Risk for Development of Breast Cancer

J. Garber, C. Zalles, B. Kimler, 2020, Cancer Prevention Research.

Who treats lung cancer? Results from a global survey.

P. Chalise, T. Komiya, C. Mackay, 2017, Respiratory investigation.

Progesterone promotes immunomodulation and tumor development in the murine mammary gland

Howard H. Yang, Ying Hu, K. Hunter, 2021, Journal for ImmunoTherapy of Cancer.

Integrative genomic analysis identifies epigenetic marks that mediate genetic risk for epithelial ovarian cancer

Jeremy Chien, Sebastian M. Armasu, Prabhakar Chalise, 2014, BMC Medical Genomics.

Evolutionary Analysis of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Reveals Genomic Divergence with Implications for Universal Vaccine Efficacy

Jeffery A. Thompson, D. Koestler, Richard Meier, 2020, Vaccines.

Exploratory analysis of mtDNA haplogroups in two Alzheimer's longitudinal cohorts

M. Michaelis, J. Pa, R. Swerdlow, 2020, Alzheimer's & dementia : the journal of the Alzheimer's Association.

A machine-learning approach for detection of local brain networks and marginally weak signals identifies novel AD/MCI differentiating connectomic neuroimaging biomarkers

I. Dinov, J. Mahnken, Jian Kang, 2021, bioRxiv.

Impact of previous anti-angiogenesis treatment in nivolumab-treated advanced non-small cell lung cancer

C. Huang, P. Chalise, P. Neupane, 2018 .

Bioenergetic and inflammatory systemic phenotypes in Alzheimer’s disease APOE ε4‐carriers

H. Anderson, R. Swerdlow, J. Burns, 2021, Aging cell.

InterSIM: Simulation tool for multiple integrative 'omic datasets'

Brooke L. Fridley, Prabhakar Chalise, Rama Raghavan, 2016, Comput. Methods Programs Biomed..

Status of oncologic specialties: global survey of physicians treating cancer

P. Chalise, T. Komiya, C. Mackay, 2017, International Journal of Clinical Oncology.

An ensemble-based Cox proportional hazards regression framework for predicting survival in metastatic castration-resistant prostate cancer (mCRPC) patients

B. Fridley, D. Koestler, Richard Meier, 2016, F1000Research.

Safety and Efficacy of Bipolar vs Monopolar Transurethral Resection of Bladder Tumor- A Randomized Controlled Trial

P. Chalise, P. Gyawali, S. Poudyal, 2020 .

Oculomotor Deficits and Symptom Severity Are Associated With Poorer Dynamic Mobility in Chronic Mild Traumatic Brain Injury

H. Devos, P. Chalise, L. D'Silva, 2021, Frontiers in Neurology.

Pharmacometabolomics of Respiratory Phenotypic Response to Dexamethasone in Preterm Infants at Risk for Bronchopulmonary Dysplasia

W. Truog, P. Chalise, T. Lewis, 2019, Clinical and translational science.

Differences in blood pressure by measurement technique in neurocritically ill patients: A technological assessment

J. Nazzaro, M. Vavilala, V. Krishnamoorthy, 2018, Journal of Clinical Neuroscience.

The Association of Ethnic Pride With Health and Social Outcomes Among Young Black and Latino Men After Release From Jail

N. Freudenberg, Jessie Daniels, Megha Ramaswamy, 2017, Youth & society.

Conduit Prevalence in the Woodville Karst Plain

E. Chicken, D. Loper, P. Chalise, 2008 .

Exploration of biomarkers from a pilot weight management study for men undergoing radical prostatectomy.

William P. Parker, A. Godwin, J. Thrasher, 2021, Urologic oncology.

Simultaneous analysis of multiple data types in pharmacogenomic studies using weighted sparse canonical correlation analysis.

Ryan Abo, Liewei Wang, Prabhakar Chalise, 2012, Omics : a journal of integrative biology.

Comparison of penalty functions for sparse canonical correlation analysis

Brooke L. Fridley, Prabhakar Chalise, B. Fridley, 2012, Comput. Stat. Data Anal..

Analysis of lncRNA-miRNA-mRNA Interactions in Hyper-proliferative Human Pulmonary Arterial Smooth Muscle Cells

S. Gunewardena, P. Chalise, N. Dhillon, 2019, Scientific Reports.

JayhawksProstateDream: First release (PCDC submission)

B. Fridley, D. Koestler, Richard Meier, 2016 .

Feasibility of a Weight Management Program Tailored for Overweight Men with Localized Prostate Cancer – A Pilot Study

William P. Parker, W. Demark-Wahnefried, J. Thrasher, 2020, Nutrition and cancer.

Improving the accuracy and internal consistency of regression-based clustering of high-dimensional datasets

D. Koestler, P. Chalise, Jianghua He, 2023, Statistical applications in genetics and molecular biology.

Adipose-Tumor Crosstalk contributes to CXCL5 Mediated Immune Evasion in PDAC

M. VanSaun, P. Chalise, D. Pei, 2023, bioRxiv.

Circulating Tumor Cell Subpopulations Predict Treatment Outcome in Pancreatic Ductal Adenocarcinoma (PDAC) Patients

J. Baranda, H. Pathak, M. Hupert, 2023, Cells.

Comparison of Methods for Meta-dimensional Data Analysis Using in Silico and Biological Data Sets

Marylyn D. Ritchie, Brooke L. Fridley, Scott M. Dudek, 2012, EvoBIO.

Traumatic Brain Injury Alters the Trajectory of Age-Related Mitochondrial Change.

S. Barbay, R. Nudo, P. Chalise, 2024, Journal of Alzheimer's disease : JAD.

Performance and Prediction for Varying Survival Time Scales

Eric Chicken, Prabhakar Chalise, Daniel McGee, 2013, Commun. Stat. Simul. Comput..

Targeting germline or somatic DNA repair defects (beyond BRCA) in pancreatic cancer with niraparib: A phase II study (NIRA-PANC).

A. Godwin, S. Kumer, J. Baranda, 2023, Journal of Clinical Oncology.

Baseline age effect on parameter estimates in Cox models

D. McGee, E. Chicken, P. Chalise, 2012 .

Combined PI3K and MAPK inhibition synergizes to suppress PDAC

M. VanSaun, P. Chalise, Appolinaire A. Olou, 2023, bioRxiv.

Impact of Weight Management on Obesity-Driven Biomarkers of Prostate Cancer Progression

P. Chalise, B. Thrasher, Moben Mirza, 2024, The Journal of urology.