A. R. Barutcu

发表

A TAD boundary is preserved upon deletion of the CTCF-rich Firre locus

J. Rinn, Catherine L. Weiner, A. R. Barutcu, 2018, Nature Communications.

Chromatin interaction analysis reveals changes in small chromosome and telomere clustering between epithelial and breast cancer cells

G. Stein, J. Lian, J. Dekker, 2015, Genome Biology.

SMARCA4 regulates gene expression and higher-order chromatin structure in proliferating mammary epithelial cells

Job Dekker, Janet L Stein, Gary S Stein, 2016, Genome research.

C‐ing the Genome: A Compendium of Chromosome Conformation Capture Methods to Study Higher‐Order Chromatin Organization

S. K. Zaidi, Janet L Stein, Gary S Stein, 2016, Journal of cellular physiology.

Enhancers in the Peril lincRNA locus regulate distant but not local genes

J. Rinn, A. Groff, A. R. Barutcu, 2018, Genome Biology.

Intranuclear and higher‐order chromatin organization of the major histone gene cluster in breast cancer

S. K. Zaidi, G. Stein, J. Lian, 2018, Journal of cellular physiology.

Chromosomes at Work: Organization of Chromosome Territories in the Interphase Nucleus

S. K. Zaidi, G. Stein, J. Lian, 2016, Journal of cellular biochemistry.

Prolonged FOS activity disrupts a global myogenic transcriptional program by altering 3D chromatin architecture in primary muscle progenitor cells

Albert E. Almada, J. Rinn, A. Wagers, 2022, Skeletal muscle.

Editorial: RNA-Mediated Epigenetic and Transcriptional Regulation

A. R. Barutcu, Yicheng Long, Mobina Motamedi, 2022, Frontiers in Genetics.

Identifying Nuclear Matrix‐Attached DNA Across the Genome

G. Stein, J. Lian, J. Dobson, 2017, Journal of cellular physiology.

Interchromosomal interactions: A genomic love story of kissing chromosomes

J. Rinn, A. R. Barutcu, P. Maass, 2018, The Journal of cell biology.

Enhancers in the Peril lincRNA locus regulate distant but not local genes

J. Rinn, A. Groff, A. R. Barutcu, 2018, Genome Biology.

In Vivo Characterization of Linc-p21 Reveals Functional cis-Regulatory DNA Elements.

J. Rinn, Martin Sauvageau, James C. Lee, 2016, Cell reports.

Inter-chromosomal Contact Properties in Live-Cell Imaging and in Hi-C.

J. Rinn, Catherine L. Weiner, A. R. Barutcu, 2018, Molecular cell.

Systematic mapping of nuclear domain-associated transcripts reveals speckles and lamina as hubs of functionally distinct retained introns.

Robert J. Weatheritt, B. Blencowe, A. Gingras, 2022, Molecular cell.

Characterization of Higher-order Chromatin Structure in Bone Differentiation and Breast Cancer: A Dissertation

A. R. Barutcu, A. Barutcu, 2016 .

Epigenetic landscape during osteoblastogenesis defines a differentiation-dependent Runx2 promoter region.

G. Stein, J. Lian, T. Whitfield, 2014, Gene.

The bone-specific Runx2-P1 promoter displays conserved three-dimensional chromatin structure with the syntenic Supt3h promoter

G. Stein, J. Lian, T. Whitfield, 2014, Nucleic acids research.

The bone-specific Runx2-P1 promoter displays conserved three-dimensional chromatin structure with the syntenic Supt3h promoter

G. Stein, J. Lian, T. Whitfield, 2014, Nucleic acids research.

The PPARγ Locus Makes Long-Range Chromatin Interactions with Selected Tissue-Specific Gene Loci during Adipocyte Differentiation in a Protein Kinase A Dependent Manner

Y. Ohkawa, A. Imbalzano, A. R. Barutcu, 2014, PloS one.

Epigenetic Control of Cell Cycle-Dependent Histone Gene Expression Is a Principal Component of the Abbreviated Pluripotent Cell Cycle

G. Stein, P. Ghule, A. V. van Wijnen, 2012, Molecular and Cellular Biology.

Reorganization of inter‐chromosomal interactions in the 2q37‐deletion syndrome

J. Rinn, F. Luft, T. Liehr, 2018, The EMBO journal.

Spatiotemporal allele organization by allele-specific CRISPR live-cell imaging: SNP-CLING

John L Rinn, J. Rinn, Marta Melé, 2017, Nature Structural & Molecular Biology.

The connection between BRG1, CTCF and topoisomerases at TAD boundaries

G. Stein, J. Lian, J. Stein, 2017, Nucleus.

Differential contribution of steady‐state RNA and active transcription in chromatin organization

J. Rinn, B. Blencowe, A. R. Barutcu, 2019, EMBO reports.

RUNX1 contributes to higher-order chromatin organization and gene regulation in breast cancer cells.

Rachel Patton McCord, Job Dekker, Janet L Stein, 2016, Biochimica et biophysica acta.

Yeast one-hybrid assays for gene-centered human gene regulatory network mapping

David E Hill, Rachel Patton McCord, Heng Zhu, 2011, Nature Methods.

Inter-chromosomal Contact Properties in Live-Cell Imaging and in Hi-C.

J. Rinn, Catherine L. Weiner, A. R. Barutcu, 2018, Molecular cell.

Inter-chromosomal Conta ct Properties in Live-Cell

J. Rinn, Catherine L. Weiner, A. R. Barutcu, 2018 .

Cancer-testis gene expression is associated with the methylenetetrahydrofolate reductase 677 C>T polymorphism in non-small cell lung carcinoma

M. Gonen, N. Altorki, A. Gure, 2013, BMC Medical Genetics.

Cancer-testis gene expression as a biomarker of the genetic variation in the one carbon metabolic pathway

A. R. Barutcu, A. Barutcu, 2008 .

Spatiotemporal allele organization by allele-specific CRISPR live-cell imaging: SNP-CLING

J. Rinn, Marta Melé, D. Shechner, 2017, Nature Structural & Molecular Biology.

SMARCA4 regulates gene expression and higher-order chromatin structure in proliferating mammary epithelial cells

G. Stein, J. Lian, J. Dekker, 2016, Genome research.

The bone-specific Runx 2P 1 promoter displays conserved three-dimensional chromatin structure with the syntenic Supt 3 h promoter

G. Stein, J. Lian, T. Whitfield, 2015 .

The PPARγ Locus Makes Long-Range Chromatin Interactions with Selected Tissue-Specific Gene Loci during Adipocyte Differentiation in a Protein Kinase A Dependent Manner

Y. Ohkawa, A. Imbalzano, A. R. Barutcu, 2014, PloS one.

SMARCA 4 regulates gene expression and higher-order chromatin structure in proliferating mammary epithelial cells

G. Stein, J. Lian, J. Dekker, 2016 .

Assessing the basal gene expression of cancer cell lines for in vitro transcriptomic toxicology screening

Michael B. Black, P. McMullen, A. R. Barutcu, 2023, bioRxiv.

Epigenetic Control of Cell Cycle-Dependent Histone Gene Expression Is a Principal Component of the Abbreviated Pluripotent Cell Cycle

P. Ghule, J. Stein, M. Montecino, 2012, Molecular and Cellular Biology.