C. Goubert

发表

TypeTE: a tool to genotype mobile element insertions from whole genome resequencing data

J. Kidd, L. Jorde, W. Watkins, 2020, Nucleic acids research.

TypeTE: a tool to genotype mobile element insertions from whole genome resequencing data

J. Kidd, L. Jorde, W. Watkins, 2019, bioRxiv.

Genomic analysis of European Drosophila populations reveals major longitudinal structure, continent-wide selection, and unknown DNA viruses

Maite G. Barrón, J. Parsch, B. Zwaan, 2018, bioRxiv.

Discovery of rare, diagnostic AluYb8/9 elements in diverse human populations

L. Jorde, D. Witherspoon, T. Sasani, 2017, Mobile DNA.

High-Throughput Sequencing of Transposable Elements Insertions 1 Provides Evidence for Adaptive Evolution of the Invasive Asian Tiger 2 Mosquito Towards Temperate Environments 3

C. Vieira, M. Boulesteix, Claire Valiente Moro, 2016 .

Population genetics of the Asian tiger mosquito Aedes albopictus, an invasive vector of human diseases

C. Vieira, M. Boulesteix, C. Goubert, 2016, Heredity.

De novo assembly and annotation of the Asian tiger mosquito (Aedes albopictus) repeatome with dnaPipeTE from raw genomic reads and comparative analysis with the yellow fever

C. Vieira, M. Boulesteix, C. Goubert, 2015 .

Genomic Analysis of European Drosophila melanogaster Populations Reveals Longitudinal Structure, Continent-Wide Selection, and Previously Unknown DNA Viruses

Maite G. Barrón, J. Parsch, B. Zwaan, 2020, Molecular biology and evolution.

High-Throughput Sequencing of Transposable Element Insertions Suggests Adaptive Evolution of the Invasive Asian Tiger Mosquito Towards Temperate Environments

C. Vieira, M. Boulesteix, C. Valiente Moro, 2016, bioRxiv.

Genomic evidence for adaptive evolution of the invasive Asian tiger mosquito towards temperate environment

C. Vieira, M. Boulesteix, C. Valiente Moro, 2016 .

RepeatModeler2 for automated genomic discovery of transposable element families

Cédric Feschotte, Jullien M. Flynn, Robert Hubley, 2020, Proceedings of the National Academy of Sciences.

The transposable element-rich genome of the cereal pest Sitophilus oryzae

A. Smit, A. Moya, R. Hubley, 2021, BMC Biology.

The Simons Genome Diversity Project: A Global Analysis of Mobile Element Diversity

L. Jorde, W. Watkins, C. Goubert, 2020, Genome biology and evolution.

De Novo Assembly and Annotation of the Asian Tiger Mosquito (Aedes albopictus) Repeatome with dnaPipeTE from Raw Genomic Reads and Comparative Analysis with the Yellow Fever Mosquito (Aedes aegypti)

Laurent Modolo, Clément Goubert, C. Vieira, 2015, Genome biology and evolution.

RepeatModeler2: automated genomic discovery of transposable element families

Andrew G. Clark, Cédric Feschotte, Jullien M. Flynn, 2019, bioRxiv.

Genomic features underlie the co-option of SVA transposons as cis-regulatory elements in human pluripotent stem cells

L. Pagliaroli, M. Trizzino, C. Goubert, 2022, bioRxiv.

The genome of the cereal pest Sitophilus oryzae: a transposable element haven

A. Smit, A. Moya, R. Hubley, 2021 .

Contribution of unfixed transposable element insertions to human regulatory variation

C. Feschotte, C. Goubert, N. Zevallos, 2019, bioRxiv.

Discovery of rare, diagnostic AluYb8/9 elements in diverse human populations

L. Jorde, D. Witherspoon, T. Sasani, 2017, Mobile DNA.

Duplication and Specialization of NUDX1 in Rosaceae Led to Geraniol Production in Rose Petals

C. Douady, J. Caissard, R. Schuurink, 2022, Molecular biology and evolution.

Human-aided dispersal facilitates parasitism escape in the most invasive mosquito species

Rémy Cazabet, E. Desouhant, M. Boulesteix, 2023, bioRxiv.

French invasive Asian tiger mosquito populations harbor reduced bacterial microbiota and genetic diversity compared to Vietnamese autochthonous relatives

C. Valiente Moro, F. Tran, P. Mavingui, 2015, Front. Microbiol..

A beginner’s guide to manual curation of transposable elements

Anna V. Protasio, Rory J. Craig, C. Goubert, 2022, Mobile DNA.

Genomic analysis of European Drosophila populations reveals major longitudinal structure, continent-wide selection, and unknown DNA viruses

Maite G. Barrón, J. Parsch, B. Zwaan, 2018, bioRxiv.

Population‐specific dynamics and selection patterns of transposable element insertions in European natural populations

A. Dufour, S. Guirao-Rico, C. Vieira, 2019, Molecular ecology.

Genomic evidence for adaptive evolution of the invasive Asian tiger mosquito towards temperate environment

C. Vieira, M. Boulesteix, P. Mavingui, 2016 .

Short- and long-range cues used by ground-dwelling parasitoids to find their host

A. Cortesero, D. Poinsot, C. Josso, 2013, Naturwissenschaften.

Identification and quantification of transposable element transcripts using Long-Read RNA-seq in Drosophila germline tissues

Marie Fablet, N. Burlet, F. Sabot, 2023, bioRxiv.

Genomic analysis of European Drosophila melanogaster populations reveals 1 longitudinal structure , continent-wide selection , and previously unknown DNA viruses 2 3

Maite G. Barrón, J. Parsch, B. Zwaan, 2020 .

Assembly-Free Detection and Quantification of Transposable Elements with dnaPipeTE.

C. Goubert, 2023, Methods in molecular biology.

Genomic analysis of European Drosophila melanogaster populations on a dense spatial scale reveals longitudinal population structure and continent-wide selection

Maite G. Barrón, J. Parsch, B. Deplancke, 2018 .

Homology-Free Detection of Transposable Elements Unveils Their Dynamics in Three Ecologically Distinct Rhodnius Species

C. Vieira, C. Goubert, F. A. Monteiro, 2020, Genes.

Human-aided dispersal and population bottlenecks facilitate parasitism escape in the most invasive mosquito species

Rémy Cazabet, E. Desouhant, M. Boulesteix, 2024, bioRxiv.

Correction: A beginner’s guide to manual curation of transposable elements

Anna V. Protasio, Rory J. Craig, C. Goubert, 2022, Mobile DNA.

GraffiTE: a Unified Framework to Analyze Transposable Element Insertion Polymorphisms using Genome-graphs

Xun Chen, C. Goubert, Cristian Groza, 2023, bioRxiv.

Cryptic endogenous retrovirus subfamilies in the primate lineage

Fumitaka Inoue, Xun Chen, C. Goubert, 2024, bioRxiv.