J. D. de Vries

F. Dekker, J. Frijns, J. D. de Vries, 2009, Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology.

The respiratory virome and exacerbations in patients with chronic obstructive pulmonary disease

M. Feltkamp, P. Bakke, S. van Boheemen, 2019, bioRxiv.

Improved diagnosis of viral encephalitis in adult and pediatric hematological patients using viral metagenomics.

M. Feltkamp, J. Verschuuren, I. Sidorov, 2020, Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology.

Improved diagnosis of viral encephalitis in adult and pediatric hematological patients using viral metagenomics

M. Feltkamp, J. Verschuuren, I. Sidorov, 2020, bioRxiv.

Rhinovirus Detection in the Nasopharynx of Children Undergoing Cardiac Surgery Is Not Associated With Longer PICU Length of Stay: Results of the Impact of Rhinovirus Infection After Cardiac Surgery in Kids (RISK) Study.

E. de Jonge, E. V. van Zwet, M. Hazekamp, 2020, Pediatric critical care medicine : a journal of the Society of Critical Care Medicine and the World Federation of Pediatric Intensive and Critical Care Societies.

Keeping Ebola out of the lab: a practical solution on how to analyze Ebola associated blood anomalies

J. Bakker, C. Cobbaert, J. D. de Vries, 2016, Clinical chemistry and laboratory medicine.

Non-lytic antibiotic treatment in community-acquired pneumococcal pneumonia does not attenuate inflammation: the PRISTINE trial

J. V. van Dissel, G. Groeneveld, C. Cobbaert, 2019, The Journal of antimicrobial chemotherapy.

Immune Determinants of Viral Clearance in Hospitalised COVID-19 Patients: Reduced Circulating Naïve CD4+ T Cell Counts Correspond with Delayed Viral Clearance

J. Goeman, M. Feltkamp, J. V. van Dongen, 2022, Cells.

Absence of rapid T cell control corresponds with delayed viral clearance in hospitalised COVID-19 patients

J. Goeman, M. Heemskerk, F. Staal, 2021 .

Congenital cytomegalovirus infection in the Netherlands: Birth prevalence and risk factors

J. Loeber, E. Claas, J. D. de Vries, 2011, Journal of medical virology.

Cytomegalovirus DNA detection in dried blood spots and perilymphatic fluids from pediatric and adult cochlear implant recipients with prelingual deafness.

E. Mylanus, J. D. de Vries, A. Kroes, 2013, Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology.

Prolonged activation of nasal immune cell populations and development of tissue-resident SARS-CoV-2-specific CD8+ T cell responses following COVID-19

J. V. van Dongen, R. Hagedoorn, M. Heemskerk, 2021, Nature immunology.

Immune status of health care workers to measles virus: evaluation of protective titers in four measles IgG EIAs.

M. Koopmans, H. T. ten Hulscher, R. Binnendijk, 2015, Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology.

A fatal course of neonatal meningo-encephalitis.

C. Peeters-Scholte, G. van Wezel-Meijler, K. Wolthers, 2012, Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology.

Host biomarker-based quantitative rapid tests for detection and treatment monitoring of tuberculosis and COVID-19

Elisa M. Tjon Kon Fat, J. Goeman, R. Tsonaka, 2022, iScience.

STROBE-metagenomics: a STROBE extension statement to guide the reporting of metagenomics studies

Andre Charlett, Sofia Morfopoulou, Denise M O'Sullivan, 2020, The Lancet Infectious Diseases.

The multidimensional nature of metagenomics drives interdisciplinary diagnostics

J. D. de Vries, 2021, EBioMedicine.

SARS-coronavirus-2 replication in Vero E6 cells: replication kinetics, rapid adaptation and cytopathology

Natacha S. Ogando, I. Sidorov, M. Bárcena, 2020, bioRxiv.

Benchmark of thirteen bioinformatic pipelines for metagenomic virus diagnostics using datasets from clinical samples

J. Breuer, S. van Boheemen, I. Sidorov, 2021, medRxiv.

Recommendations for the introduction of metagenomic high-throughput sequencing in clinical virology, part I: Wet lab procedure.

Richard Molenkamp, Martin Beer, Michael Huber, 2020, Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology.

Real-time PCR versus viral culture on urine as a gold standard in the diagnosis of congenital cytomegalovirus infection.

E. Claas, R. Molenkamp, K. Wolthers, 2012, Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology.

Performance of Five Metagenomic Classifiers for Virus Pathogen Detection Using Respiratory Samples from a Clinical Cohort

S. van Boheemen, H. Mei, I. Sidorov, 2022, medRxiv.

Implementing neonatal screening for congenital cytomegalovirus: addressing the deafness of policy makers

J. D. de Vries, A. Kroes, A. Vossen, 2011, Reviews in medical virology.

Human Bocavirus in an Immunocompromised Child Presenting with Severe Diarrhea

P. V. van Rheenen, E. Claas, F. Smiers, 2009, Journal of Clinical Microbiology.

Molecular epidemiology and clinical impact of rhinovirus infections in adults during three epidemic seasons in 11 European countries (2007–2010)

H. Goossens, P. Simmonds, C. Butler, 2020, Thorax.

Prolonged activation of nasal immune cell populations and development of tissue-resident SARS-CoV-2 specific CD8 T cell responses following COVID-19

J. Goeman, R. Tsonaka, T. Hankemeier, 2021, medRxiv.

Valganciclovir for Congenital Cytomegalovirus.

H. D. de Melker, J. D. de Vries, M. Korndewal, 2015, The New England journal of medicine.

Viral metagenomic sequencing in the diagnosis of meningoencephalitis: a review of technical advances and diagnostic yield

J. Goeman, E. Claas, J. D. de Vries, 2021, Expert review of molecular diagnostics.

Longitudinal Monitoring of DNA Viral Loads in Transplant Patients Using Quantitative Metagenomic Next-Generation Sequencing

M. Feltkamp, I. Sidorov, E. Claas, 2021, medRxiv.

Coronavirus discovery by metagenomic sequencing: a tool for pandemic preparedness

I. Sidorov, E. Claas, E. Snijder, 2020, Journal of Clinical Virology.

Evaluation of DNA extraction methods for dried blood spots in the diagnosis of congenital cytomegalovirus infection.

E. Claas, J. D. de Vries, A. Kroes, 2009, Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology.

Awareness of congenital cytomegalovirus among doctors in the Netherlands.

F. Dekker, J. D. de Vries, A. Vossen, 2009, Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology.

[Congenital CMV infections].

J. D. de Vries, J. Murk, J. Wieringa, 2013, Nederlands tijdschrift voor geneeskunde.

Prolonged shedding of rhinovirus and re-infection in adults with respiratory tract illness

H. Goossens, C. Butler, P. Little, 2014, European Respiratory Journal.

Improved diagnosis of active Schistosoma infection in travellers and migrants using the ultra-sensitive in-house lateral flow test for detection of circulating anodic antigen (CAA) in serum

P. Corstjens, C. D. de Dood, L. van Lieshout, 2018, European Journal of Clinical Microbiology & Infectious Diseases.

Recommendations for the introduction of metagenomic next-generation sequencing in clinical virology, part II: bioinformatic analysis and reporting.

P. Simmonds, M. Beer, E. Puchhammer-Stöckl, 2021, Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology.

PCR assays for detection of human astroviruses: In silico evaluation and design, and in vitro application to samples collected from patients in the Netherlands.

A. Gorbalenya, E. Claas, A. Gulyaeva, 2018, Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology.

Rapid Genotyping of Cytomegalovirus in Dried Blood Spots by Multiplex Real-Time PCR Assays Targeting the Envelope Glycoprotein gB and gH Genes

A. A. van der Eijk, J. D. de Vries, A. Kroes, 2011, Journal of Clinical Microbiology.

A comparison of five Illumina, Ion Torrent, and nanopore sequencing technology-based approaches for whole genome sequencing of SARS-CoV-2

I. Sidorov, M. Jonges, S. Matamoros, 2023, European Journal of Clinical Microbiology & Infectious Diseases.

Effectiveness of oseltamivir in reduction of complications and 30-day mortality in severe seasonal influenza infection.

J. Oosterheert, J. V. van Dissel, G. Groeneveld, 2020, International journal of antimicrobial agents.

Rhinovirus viremia in adult patients with high viral load in bronchoalveolar lavages.

E. Claas, J. D. de Vries, P. A. von dem Borne, 2017, Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology.

Positive blood culture with Plasmodium falciparum: case report.

J. D. de Vries, A. Mulder, S. van Assen, 2007, The American journal of tropical medicine and hygiene.

Extraction of DNA from dried blood in the diagnosis of congenital CMV infection.

Maria Barbi, Sandro Binda, Eric C J Claas, 2012, Methods in molecular biology.

Screening newborns for congenital cytomegalovirus infection.

J. D. de Vries, A. Kroes, A. Vossen, 2010, JAMA.

Comparison of the performance of two targeted metagenomic virus capture probe-based methods using synthetic viral sequences and clinical samples

S. A. Boers, Arnoud Boot, I. Sidorov, 2023, medRxiv.

Establishing immunogenicity and safety of needle-free intradermal delivery by nanoporous ceramic skin patch of mRNA SARS-CoV-2 vaccine as a revaccination strategy in healthy volunteers

C. Prins, L. Visser, J. D. de Vries, 2023, Virus research.

A Targeted LC-MRM3 Proteomic Approach for the Diagnosis of SARS-CoV-2 Infection in Nasopharyngeal Swabs

M. Dhaenens, A. Harms, A. Budding, 2024, Molecular & cellular proteomics : MCP.