Alexander Sczyrba

发表

Nonlinear Dimensionality Reduction for Cluster Identification in Metagenomic Samples

Alexander Sczyrba, Barbara Hammer, Andrej Gisbrecht, 2013, 2013 17th International Conference on Information Visualisation.

AMBER: Assessment of Metagenome BinnERs

Alexander Sczyrba, Peter Belmann, Alice C McHardy, 2017, bioRxiv.

EMMA: a platform for consistent storage and efficient analysis of microarray data.

Alexander Sczyrba, Daniela Bartels, Folker Meyer, 2003, Journal of biotechnology.

acdc – Automated Contamination Detection and Confidence estimation for single-cell genome data

Jan Krüger, Alexander Sczyrba, Barbara Hammer, 2016, BMC Bioinformatics.

Analyzing large scale genomic data on the cloud with Sparkhit

Jan Krüger, Alexander Sczyrba, Liren Huang, 2017, Bioinform..

Common ELIXIR Service for Researcher Authentication and Authorisation

Alexander Sczyrba, Ludek Matyska, Mikael Linden, 2018, F1000Research.

IsoSVM – Distinguishing isoforms and paralogs on the protein level

Alexander Sczyrba, Stefan Lorkowski, Michael Spitzer, 2006, BMC Bioinformatics.

AGenDA: gene prediction by cross-species sequence comparison

Alexander Sczyrba, Burkhard Morgenstern, Saurabh Garg, 2004, Nucleic Acids Res..

Jan Krüger, Alexander Sczyrba, Robert Giegerich, 2003, Nucleic Acids Res..

GeneFisher-P: variations of GeneFisher as processes in Bio-jETI

Alexander Sczyrba, Robert Giegerich, Tiziana Margaria, 2008, BMC Bioinformatics.

e2g: an interactive web-based server for efficiently mapping large EST and cDNA sets to genomic sequences

Jan Krüger, Alexander Sczyrba, Robert Giegerich, 2004, Nucleic Acids Res..

An optimized bioinformatic workflow for of biogas plants

Erdmann Rapp, Alexander Sczyrba, Robert Heyer, 2016 .

MeCorS: Metagenome-enabled error correction of single cell sequencing reads

Alexander Sczyrba, Tanja Woyke, Andreas Bremges, 2016, Bioinform..

AGenDA: homology-based gene prediction

Alexander Sczyrba, Michael Brudno, Burkhard Morgenstern, 2003, Bioinform..

Rapid protein alignment in the cloud: HAMOND combines fast DIAMOND alignments with Hadoop parallelism.

Alexander Sczyrba, Jia Yu, Alexander Goesmann, 2017, Journal of biotechnology.

Genlight: An Interactive System for High-throughput Sequence Analysis and Comparative Genomics

Michael Beckstette, Alexander Sczyrba, Paul M. Selzer, 2004, German Conference on Bioinformatics.

Automatic discovery of metagenomic structure

Alexander Sczyrba, Barbara Hammer, Markus Lux, 2015, 2015 International Joint Conference on Neural Networks (IJCNN).

Personalized cloud-based bioinformatics services for research and education: use cases and the elasticHPC package

Jan Krüger, Alexander Sczyrba, Robert Giegerich, 2012, BMC Bioinformatics.

Bioboxes: standardised containers for interchangeable bioinformatics software

Alexander Sczyrba, Alice C. McHardy, Peter Belmann, 2015, GigaScience.

AltAVisT: Comparing alternative multiple sequence alignments

Alexander Sczyrba, Burkhard Morgenstern, Andreas W. M. Dress, 2003, Bioinform..

Two interactive Bioinformatics courses at the Bielefeld University Bioinformatics Server

Alexander Sczyrba, Robert Giegerich, Susanne Konermann, 2008, Briefings Bioinform..

Genlight: Interactive high-throughput sequence analysis and comparative genomics

Michael Beckstette, Jens T. Mailänder, Richard J. Marhöfer, 2004, J. Integr. Bioinform..

An optimized bioinformatic workflow for metaproteomics of biogas plants

Alexander Sczyrba, Robert Heyer, Fabian Kohrs, 2016 .

ConCysFind: a pipeline tool to predict conserved amino acids of protein sequences across the plant kingdom

Jan Krüger, Alexander Sczyrba, Karl J. Dietz, 2020, BMC Bioinformatics.

Genomic and Metabolic Diversity of Marine Group I Thaumarchaeota in the Mesopelagic of Two Subtropical Gyres

Alexander Sczyrba, Sergey Koren, Tanja Woyke, 2014, PloS one.

Decontamination of MDA Reagents for Single Cell Whole Genome Amplification

Alexander Sczyrba, Jan-Fang Cheng, Tanja Woyke, 2011, PloS one.

Finished genome sequence and methylome of the cyanide-degrading Pseudomonas pseudoalcaligenes strain CECT5344 as resolved by single-molecule real-time sequencing.

Alexander Sczyrba, Alfred Pühler, Andreas Bremges, 2016, Journal of biotechnology.

Single-cell genomics reveals complex carbohydrate degradation patterns in poribacterial symbionts of marine sponges

Alexander Sczyrba, Tanja Woyke, Natalia N. Ivanova, 2013, The ISME Journal.

XenDB: Full length cDNA prediction and cross species mapping in Xenopus laevis

Alexander Sczyrba, Robert Giegerich, A. Brivanlou, 2005, BMC Genomics.

CAMISIM: simulating metagenomes and microbial communities

Alexander Sczyrba, Peter Belmann, Alice C McHardy, 2018, bioRxiv.

Deeply sequenced metagenome and metatranscriptome of a biogas-producing microbial community from an agricultural production-scale biogas plant

Alexander Sczyrba, Alfred Pühler, Peter Belmann, 2015, GigaScience.

Severe COVID-19 Is Marked by a Dysregulated Myeloid Cell Compartment

Alexander Sczyrba, Andreas Keller, Christian Drosten, 2020, Cell.

High-throughput in vitro glycoside hydrolase (HIGH) screening for enzyme discovery.

Alexander Sczyrba, Harvey W Blanch, Matthias Hess, 2011, Angewandte Chemie.

Critical Assessment of Metagenome Interpretation – a benchmark of computational metagenomics software

Dominique Lavenier, Alexander Sczyrba, Mihai Pop, 2017, bioRxiv.

Automated Contamination Detection in Single-Cell Sequencing

Alexander Sczyrba, Barbara Hammer, Markus Lux, 2015, bioRxiv.