G. Zhang

发表

MULTIPRED2: A computational system for large-scale identification of peptides predicted to bind to HLA supertypes and alleles

O. Lund, D. DeLuca, D. Keskin, 2010, Journal of Immunological Methods.

Prediction of supertype-specific HLA class I binding peptides using support vector machines.

I. Bozic, V. Brusic, C. Kwoh, 2007, Journal of immunological methods.

Mutated BCR-ABL Generates Immunogenic T-cell Epitopes in CML Patients

D. DeLuca, D. Neuberg, D. Keskin, 2012, Clinical Cancer Research.

EGFR T790M Mutation as a Possible Target for Immunotherapy; Identification of HLA-A*0201-Restricted T Cell Epitopes Derived from the EGFR T790M Mutation

Y. Yamashita, K. Nishio, K. Azuma, 2013, PloS one.

Mass Spectrometry Profiling of HLA‐Associated Peptidomes in Mono‐allelic Cells Enables More Accurate Epitope Prediction

Jennifer G. Abelin, N. Hacohen, S. Carr, 2017, Immunity.

Pathway analysis and transcriptomics improve protein identification by shotgun proteomics from samples comprising small number of cells - a benchmarking study

F. Lisacek, V. Brusic, D. Fenyo, 2014, BMC Genomics.

Conservation and Variability of Dengue Virus Proteins: Implications for Vaccine Design

Tin Wee Tan, Vladimir Brusic, Guang Lan Zhang, 2008, PLoS neglected tropical diseases.

PREDTAP: a system for prediction of peptide binding to the human transporter associated with antigen processing

Chee Keong Kwoh, Vladimir Brusic, Nikolai Petrovsky, 2006, Immunome research.

PREDNOD, a prediction server for peptide binding to the H-2g7 haplotype of the non-obese diabetic mouse

B. Schmidt, N. Petrovsky, V. Brusic, 2006, Autoimmunity.

Transcriptionally Abundant Major Histocompatibility Complex Class I Alleles Are Fundamental to Nonhuman Primate Simian Immunodeficiency Virus-Specific CD8+ T Cell Responses

Melisa L. Budde, Jennifer J. Lhost, V. Brusic, 2011, Journal of Virology.

Data processing and analysis for protein microarrays.

Vladimir Brusic, Ovidiu Marina, Surajit Ray, 2011, Methods in molecular biology.

Novel myeloma-associated antigens revealed in the context of syngeneic hematopoietic stem cell transplantation.

D. Neuberg, K. Anderson, Catherine J. Wu, 2008, Blood.

EBVdb: a data mining system for knowledge discovery in Epstein-Barr virus with applications in T cell immunology and vaccinology

D. Keskin, E. Reinherz, L. Chitkushev, 2015, 2015 International Workshop on Artificial Immune Systems (AIS).

FluKB: A Knowledge-Based System for Influenza Vaccine Target Discovery and Analysis of the Immunological Properties of Influenza Viruses

V. Brusic, E. Reinherz, L. Olsen, 2015, Journal of immunology research.

Conservation Analysis of Dengue Virus T-cell Epitope-Based Vaccine Candidates Using Peptide Block Entropy

D. Keskin, V. Brusic, E. Reinherz, 2011, Front. Immun..

Novel decontamination approaches and their potential application for post-harvest aflatoxin control

B. Quinn, C. Elliott, P. Bourke, 2020, Trends in Food Science & Technology.

Performance Evaluation of MULTIEPD1 on Prediction of MHC Class I Binders

V. Brusic, C. Kwoh, G. Zhang, 2006, 2006 International Conference on Biomedical and Pharmaceutical Engineering.

Identification and characterization of HLA-A24-specific XBP1, CD138 (Syndecan-1) and CS1 (SLAMF7) peptides inducing antigens-specific memory cytotoxic T lymphocytes targeting multiple myeloma

D. Keskin, N. Munshi, N. Munshi, 2018, Leukemia.

A computational method for identification of vaccine targets from protein regions of conserved human leukocyte antigen binding

V. Brusic, E. Reinherz, L. Olsen, 2015, BMC Medical Genomics.

Dana-Farber repository for machine learning in immunology.

Vladimir Brusic, Guang Lan Zhang, Derin B Keskin, 2011, Journal of immunological methods.

TANTIGEN: a comprehensive database of tumor T cell antigens

Vladimir Brusic, Guang Lan Zhang, Lars Rønn Olsen, 2017, Cancer Immunology, Immunotherapy.

Physical detection of influenza A epitopes identifies a stealth subset on human lung epithelium evading natural CD8 immunity

Guang Lan Zhang, Alexander R Ivanov, Derin B Keskin, 2015, Proceedings of the National Academy of Sciences.

Reply to van de Sandt and Rimmelzwaan: Matching epitope display with functional avidity

D. Keskin, E. Reinherz, B. Karger, 2015, Proceedings of the National Academy of Sciences.

Human Leukocyte Antigen Typing Using a Knowledge Base Coupled with a High-Throughput Oligonucleotide Probe Array Analysis

D. DeLuca, D. Keskin, V. Brusic, 2014, Front. Immunol..

Human Leukocyte Antigen Typing Using a Knowledge Base Coupled with a High-Throughput Oligonucleotide Probe Array Analysis

D. DeLuca, D. Keskin, V. Brusic, 2014, Frontiers in Immunology.

Machine learning competition in immunology - Prediction of HLA class I binding peptides.

Harris Papadopoulos, Tomer Hertz, Vladimir Brusic, 2011, Journal of immunological methods.

Improved T-cell Immunity Following Neoadjuvant Chemotherapy in Ovarian Cancer

Shuqiang Li, K. Livak, D. Neuberg, 2022, Clinical cancer research : an official journal of the American Association for Cancer Research.

A computational method for identification of vaccine targets from protein regions of conserved human leukocyte antigen binding

V. Brusic, E. Reinherz, L. Olsen, 2015, BMC Medical Genomics.

BlockLogo: visualization of peptide and sequence motif conservation.

Vladimir Brusic, Jing Sun, Christian Schönbach, 2013, Journal of immunological methods.

FLAVIdB: A data mining system for knowledge discovery in flaviviruses with direct applications in immunology and vaccinology

V. Brusic, E. Reinherz, L. Olsen, 2013, Immunome research.

Big Data Analytics in Immunology: A Knowledge-Based Approach

Vladimir Brusic, Lou Chitkushev, Guang Lan Zhang, 2014, BioMed research international.

PB1-F2 Finder: scanning influenza sequences for PB1-F2 encoding RNA segments

Vladimir Brusic, Guang Zhang, Ellis L. Reinherz, 2011, BMC Bioinformatics.

Computational Models for Identifying Promiscuous HLA-B7 Binders based on Information Theory and Support Vector Machine

Joo Chuan Tong, Chee Keong Kwoh, Yun Zheng, 2006, 2006 International Conference on Biomedical and Pharmaceutical Engineering.

HPVdb: a data mining system for knowledge discovery in human papillomavirus with applications in Tcell immunology and

D. Keskin, V. Brusic, E. Reinherz, 2014 .

Database resources for proteomics-based analysis of cancer.

Vladimir Brusic, Guang Lan Zhang, David S DeLuca, 2011, Methods in molecular biology.

Hotspot Hunter: a computational system for large-scale screening and selection of candidate immunological hotspots in pathogen proteomes

V. Brusic, C. Kwoh, Asif M. Khan, 2008, BMC Bioinformatics.

MULTIPRED2: A computational system for large-scale identification of peptides predicted to bind to HLA supertypes and alleles

O. Lund, D. DeLuca, D. Keskin, 2010, Journal of Immunological Methods.

Machine Learning Competition in Immunology – Prediction of HLA class I molecules

Christos, M. Polycarpou, O. Lund, 2011 .

Evolutionarily Conserved Protein Sequences of Influenza A Viruses, Avian and Human, as Vaccine Targets

Tin Wee Tan, Vladimir Brusic, A. T. Heiny, 2007, PloS one.

MULTIPRED: a computational system for prediction of promiscuous HLA binding peptides

Vladimir Brusic, Guanglan Zhang, Asif M. Khan, 2005, Nucleic Acids Res..

PO and ID BCG vaccination in humans induce distinct mucosal and systemic immune responses and CD4+ T cell transcriptomal molecular signatures

V. Brusic, P. Andersen, G. Matuschak, 2017, Mucosal Immunology.

Structural bioinformatics Prediction of HLA-DQ 3 . 2 b Ligands : evidence of multiple registers in class II binding peptides

Tin Wee Tan, Joo Chuan Tong, Vladimir Brusic, 2006 .

Hotspot Hunter: a computational system for large-scale screening and selection of candidate immunological hotspots in pathogen proteomes

V. Brusic, C. Kwoh, G. Zhang, 2008, BMC Bioinformatics.

Machine learning competition in immunology - Prediction of HLA class I binding peptides.

M. Polycarpou, C. Yanover, Gajendra P.S. Raghava, 2011, JIM - Journal of Immunological Methods.

Neural Models for Predicting Viral Vaccine Targets

Vladimir Brusic, Guanglan Zhang, Asif M. Khan, 2005, J. Bioinform. Comput. Biol..

Mutated BCR-ABL Generates Immunogenic T-cell Epitopes in CML Patients

D. DeLuca, D. Neuberg, D. Keskin, 2012, Clinical Cancer Research.

FLAVIdB: A data mining system for knowledge discovery in flaviviruses with direct applications in immunology and vaccinology

V. Brusic, E. Reinherz, L. Olsen, 2013, Immunome research.