B. Shepherd

Sally S Bebawy, Richard D Moore, J. Margolick, 2017, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

Time to HAART Initiation after Diagnosis and Treatment of Opportunistic Infections in Patients with AIDS in Latin America

V. Fink, B. Grinsztejn, B. Shepherd, 2016, PloS one.

The relationship between injection and noninjection drug use and HIV disease progression.

T. Sterling, T. Hulgan, P. Rebeiro, 2011, Journal of substance abuse treatment.

Cancer in HIV-Infected Persons From the Caribbean, Central and South America

D. Masys, P. Cahn, C. César, 2011, Journal of acquired immune deficiency syndromes.

Antiretroviral therapy and Kaposi’s sarcoma trends and outcomes among adults with HIV in Latin America

V. Fink, E. Gotuzzo, C. Jenkins, 2021, Journal of the International AIDS Society.

Anal squamous intraepithelial lesions among HIV positive and HIV negative men who have sex with men in Thailand

S. Vermund, J. Ananworanich, K. Ruxrungtham, 2009, Sexually Transmitted Infections.

Survival after cancer diagnosis in a cohort of HIV-positive individuals in Latin America

P. Cahn, V. Fink, C. Jenkins, 2018, Infectious Agents and Cancer.

Hemoglobin May Contribute to Sex Differences in Mortality among HIV-Infected Persons in Care

T. Sterling, P. Rebeiro, B. Shepherd, 2012, PloS one.

Impact of definitions of loss to follow-up on estimates of retention, disease progression, and mortality: application to an HIV program in Mozambique.

S. Vermund, B. Shepherd, M. Blevins, 2013, American journal of epidemiology.

Outcomes of HIV-positive patients with cryptococcal meningitis in the Americas.

T. Sterling, B. Grinsztejn, B. Shepherd, 2017, International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases.

A decade of HAART in Latin America: Long term outcomes among the first wave of HIV patients to receive combination therapy

P. Cahn, J. Pape, E. Gotuzzo, 2017, PloS one.

The Impact of COVID-19 on the HIV Care Continuum in a Large Urban Southern Clinic

P. Rebeiro, B. Shepherd, Asghar Kheshti, 2022, AIDS and Behavior.

“If it weren’t for my traditional healer, I would be dead”: Engaging traditional healers to support people living with HIV in rural Mozambique

S. Vermund, B. Shepherd, C. Audet, 2022, PloS one.

Mycobacterium tuberculosis Antigen 85A Induces Th-1 Immune Responses in Systemic Sarcoidosis

S. Kalams, W. Drake, Robert F Miller, 2007, Journal of Clinical Immunology.

Tuberculosis treatment intermittency in the continuation phase and mortality in HIV-positive persons receiving antiretroviral therapy

W. Wester, T. Sterling, P. Cahn, 2022, BMC Infectious Diseases.

Virologic, Immunologic and Clinical Responses in Foreign-Born versus US-Born HIV-1 Infected Adults Initiating Antiretroviral Therapy: An Observational Cohort Study

T. Sterling, P. Rebeiro, B. Shepherd, 2012, PloS one.

Self-reported Cannabis Use and Changes in Body Mass Index, CD4 T-Cell Counts, and HIV-1 RNA Suppression in Treated Persons with HIV

Sally S Bebawy, T. Sterling, T. Hulgan, 2019, AIDS and Behavior.

Is substance use associated with HIV cascade outcomes in Latin America?

P. Rebeiro, R. D. De Boni, E. Gotuzzo, 2018, PloS one.

Risk factors and prevalence of tuberculosis, human immunodeficiency virus, syphilis, hepatitis B virus, and hepatitis C virus among prisoners in Pakistan.

S. Vermund, C. Jenkins, B. Shepherd, 2010, International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases.

Interleukin-17A is associated with flow-mediated dilation and interleukin-4 with carotid plaque in persons with HIV

S. Mallal, D. Harrison, J. Beckman, 2022, AIDS.

Human Rhinoviruses in Severe Respiratory Disease in Very Low Birth Weight Infants

F. Polack, S. Kleeberger, B. Shepherd, 2012, Pediatrics.

Modeling continuous response variables using ordinal regression

F. Harrell, B. Shepherd, Qi Liu, 2017, Statistics in medicine.

Etiology of Persistent Microalbuminuria in Nigeria (P_MICRO study): protocol and study design

A. Takakura, J. Bonventre, J. Kopp, 2022, BMC Infectious Diseases.

An empirical comparison of two novel transformation models

T. Hothorn, F. Harrell, B. Shepherd, 2019, Statistics in medicine.

Hematopoietic Stem Cell Behavior in Non-human Primates

Abkowitz, P. Guttorp, P. Lansdorp, 2007 .

Increased Mortality after Tuberculosis Treatment Completion in Persons with HIV in Latin America.

T. Sterling, J. Pape, E. Gotuzzo, 2020, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

Analyzing clustered continuous response variables with ordinal regression models

D. Zeng, Chun Xing Li, B. Shepherd, 2022, Biometrics.

Addressing Detection Limits with Semiparametric Cumulative Probability Models

F. Harrell, B. Shepherd, N. James, 2022, 2207.02815.

Three-phase generalized raking and multiple imputation estimators to address error-prone data

Sarah C. Lotspeich, T. Lumley, R. Tao, 2022, 2205.01743.

Nonparametric estimation of Spearman's rank correlation with bivariate survival data

Svetlana K. Eden, Chun Xing Li, S. Eden, 2021, Biometrics.

PResiduals: An R Package for Residual Analysis Using Probability-Scale Residuals

B. Shepherd, Qi Liu, Chun Li, 2020, Journal of Statistical Software.

Treatment of drug-susceptible tuberculosis among people living with human immunodeficiency virus infection: an update

T. Sterling, A. Pettit, B. Shepherd, 2018, Current opinion in HIV and AIDS.

25-Hydroxyvitamin D levels after recovery from tuberculosis: insights into pathogenesis.

T. Sterling, M. Huaman, B. Shepherd, 2014, Tuberculosis.

The 2013 HIV Continuum of Care in Tennessee

S. Vermund, P. Rebeiro, A. Pettit, 2016, Public health reports.

Cellular Responses to Mycobacterial Antigens Are Present in Bronchoalveolar Lavage Fluid Used in the Diagnosis of Sarcoidosis

C. Hawkins, W. Drake, C. Jenkins, 2009, Infection and Immunity.

Acute Clearance of Human Metapneumovirus Occurs Independently of Natural Killer Cells

K. Boyd, P. Gilchuk, B. Shepherd, 2014, Journal of Virology.

Heterogeneity in outcomes of treated HIV-positive patients in Europe and North America: relation with patient and cohort characteristics.

J. Sterne, O. Kirk, A. d’Arminio Monforte, 2012, International journal of epidemiology.

S. Vermund, B. Shepherd, M. Sidat, 2012, Journal of alternative and complementary medicine.

Venezuelan Equine Encephalitis Virus Replicon Particles Encoding Respiratory Syncytial Virus Surface Glycoproteins Induce Protective Mucosal Responses in Mice and Cotton Rats

R. Johnston, J. Crowe, N. Davis, 2007, Journal of Virology.

Low Rates of Contraception Use in Women With Human Immunodeficiency Virus

T. Sterling, B. Shepherd, A. Bian, 2022, Open forum infectious diseases.

Post-randomization Biomarker Effect Modification in an HIV Vaccine Clinical Trial

M. Hudgens, P. Gilbert, B. Shepherd, 2018, 1811.03930.

Contraceptive implant use duration is not associated with breakthrough pregnancy among women living with HIV and using efavirenz: a retrospective, longitudinal analysis

C. Yiannoutsos, R. Stalter, K. Wools-Kaloustian, 2022, Journal of the International AIDS Society.

Impact of low-level viremia on clinical and virological outcomes in treated HIV-1-infected patients.

J. Sterne, O. Kirk, A. d’Arminio Monforte, 2014, AIDS.

Temporal Trends in Age at HIV Diagnosis in Cohorts in the United States, the Caribbean, and Central and South America

V. Fink, V. Rouzier, P. Luz, 2015, Aids and Behavior.

An Alphavirus Replicon-Based Human Metapneumovirus Vaccine Is Immunogenic and Protective in Mice and Cotton Rats

R. Johnston, J. Crowe, B. Shepherd, 2008, Journal of Virology.

Errors in multiple variables in human immunodeficiency virus (HIV) cohort and electronic health record data: statistical challenges and opportunities

P. Shaw, B. Shepherd, 2020, Statistical communications in infectious diseases.

Errors in multiple variables in human immunodeficiency virus (HIV) cohort and electronic health record data: statistical challenges and opportunities

P. Shaw, B. Shepherd, 2020, Statistical communications in infectious diseases.

Mean Coronary Cross‐Sectional Area as a Measure of Arterial Remodeling Using Noncontrast CT Imaging in Persons With HIV

S. Mallal, J. Beckman, J. Carr, 2022, Journal of the American Heart Association.

Transforming Growth Factor Beta Is a Major Regulator of Human Neonatal Immune Responses following Respiratory Syncytial Virus Infection

J. Crowe, N. Thornburg, B. Shepherd, 2010, Journal of Virology.

Individual, community, and structural factors associated with linkage to HIV care among people diagnosed with HIV in Tennessee

M. Brantley, P. Rebeiro, C. Jenkins, 2020, PloS one.

Potentially preventable tuberculosis among HIV-infected persons in the era of highly active antiretroviral treatment.

T. Sterling, P. Rebeiro, A. Pettit, 2009, The international journal of tuberculosis and lung disease : the official journal of the International Union against Tuberculosis and Lung Disease.

CD4/CD8 ratio and CD4 nadir predict mortality following non-communicable disease diagnosis in adults living with HIV.

T. Sterling, B. Shepherd, S. Raffanti, 2019, AIDS research and human retroviruses.

Timing of HIV diagnosis relative to pregnancy and postpartum HIV care continuum outcomes among Latin American women, 2000 to 2017

P. Rebeiro, V. Rouzier, C. Jenkins, 2021, Journal of the International AIDS Society.

Long-Term Outcomes of a National Expanded Access Program to Antiretroviral Therapy: The Chilean AIDS Cohort

B. Shepherd, C. Cortés, M. Wolff, 2010, Journal of acquired immune deficiency syndromes.

B. Shepherd, D. Sack, C. De Schacht, 2022, AIDS care.

Clinical Impact of Blood Cultures Contaminated with Coagulase-Negative Staphylococci at an Academic Medical Center

Titus L. Daniels, Patty W. Wright, T. Talbot, 2011, Infection Control & Hospital Epidemiology.

Meta-Analysis of the Morel Emotional Numbing Test for PTSD : Comment on Singh , Avasthi , and Grover

B. Shepherd, K. Morel, 2008 .

Statistical Analysis of the Comet Assay Using a Mixture of Gamma Distributions

B. K. Murray, G. B. Schaalje, B. Shepherd, 2000 .

Regression calibration to correct correlated errors in outcome and exposure

Pamela Shaw, Jiwei He, Bryan Shepherd, 2018, Statistics in medicine.

Using audit information to adjust parameter estimates for data errors in clinical trials

L. Dodd, P. Shaw, B. Shepherd, 2012, Clinical trials.

Accounting for Data Errors Discovered from an Audit in Multiple Linear Regression

Bryan E Shepherd, Chang Yu, Chang Yu, 2011, Biometrics.

Healer-led vs. clinician-led training to improve personal protective equipment use among traditional healers in South Africa: a randomized controlled trial protocol

M. Aliyu, B. Shepherd, M. Moshabela, 2021, Global health action.

Fluoroquinolone exposure prior to tuberculosis diagnosis is associated with an increased risk of death.

T. Sterling, B. Shepherd, Y. F. van der Heijden, 2012, The international journal of tuberculosis and lung disease : the official journal of the International Union against Tuberculosis and Lung Disease.

Tuberculosis and the risk of infection with other intracellular bacteria: a population-based study

T. Sterling, T. Jones, M. Huaman, 2014, Epidemiology and Infection.

Developing a Symptom Validity Test for posttraumatic stress disorder: application of the binomial distribution.

Kenneth R. Morel, B. Shepherd, K. Morel, 2008, Journal of anxiety disorders.

Absolute count and percentage of CD4+ lymphocytes are independent predictors of disease progression in HIV-infected persons initiating highly active antiretroviral therapy.

T. Sterling, T. Hulgan, B. Shepherd, 2007, The Journal of infectious diseases.

Serum Phosphate Predicts Early Mortality in Adults Starting Antiretroviral Therapy in Lusaka, Zambia: A Prospective Cohort Study

B. Chi, J. Stringer, D. Heimburger, 2010, PloS one.

Dual Analysis for Mycobacteria and Propionibacteria in Sarcoidosis BAL

R. Caprioli, W. Drake, C. Jenkins, 2012, Journal of Clinical Immunology.

Mycobacterial ESAT-6 and katG are Recognized by Sarcoidosis CD4+ T Cells When Presented by the American Sarcoidosis Susceptibility Allele, DRB1*1101

J. Sidney, A. Sette, W. Drake, 2009, Journal of Clinical Immunology.

Cellular Recognition of Mycobacterium tuberculosis ESAT-6 and KatG Peptides in Systemic Sarcoidosis

S. Kalams, W. Drake, L. Newman, 2006, Infection and Immunity.

Pregnancies among women living with HIV using contraceptives and antiretroviral therapy in western Kenya: a retrospective, cohort study

C. Yiannoutsos, K. Wools-Kaloustian, B. Musick, 2021, BMC Medicine.

Rates and Reasons for Early Change of First HAART in HIV-1-Infected Patients in 7 Sites throughout the Caribbean and Latin America

D. Masys, P. Cahn, V. Fink, 2010, PloS one.

Evidence for preferential Ig gene usage and differential TdT and exonuclease activities in human naïve and memory B cells.

J. Crowe, J. Higginbotham, B. Shepherd, 2007, Molecular immunology.

Respiratory syncytial virus uses a Vps4-independent budding mechanism controlled by Rab11-FIP2

Nicole A. Ducharme, J. Crowe, P. Santangelo, 2008, Proceedings of the National Academy of Sciences.

Hematopoietic stem-cell behavior in nonhuman primates.

Peter Guttorp, Bryan E Shepherd, Hans-Peter Kiem, 2007, Blood.

Estimating human hematopoietic stem cell kinetics using granulocyte telomere lengths.

Peter Guttorp, Bryan E Shepherd, Janis L Abkowitz, 2004, Experimental hematology.

Partners-based HIV treatment for seroconcordant couples attending antenatal and postnatal care in rural Mozambique: A cluster randomized trial protocol.

S. Vermund, A. Ciaranello, M. Aliyu, 2018, Contemporary clinical trials.

Risk Factors for Delayed Initiation of Combination Antiretroviral Therapy in Rural North Central Nigeria

Bryan E. Shepherd, C. William Wester, Meridith Blevins, 2014, Journal of acquired immune deficiency syndromes.

Variation in missed doses and reasons for discontinuation of anti-tuberculosis drugs during hospital treatment for drug-resistant tuberculosis in South Africa

T. Sterling, K. Dheda, H. Cox, 2023, PloS one.

HIV Drug Therapy in the Americas Congress, 13 – 15 June 2013, São Paulo, Brazil

M. Lederman, D. Kuritzkes, K. White, 2013, Journal of the International AIDS Society.

Prevalence and Predictors of Colposcopic-Histopathologically Confirmed Cervical Intraepithelial Neoplasia in HIV-Infected Women in India

S. Vermund, C. Jenkins, S. Mehendale, 2010, PloS one.

Prevalence and predictors of squamous intraepithelial lesions of the cervix in HIV-infected women in Lusaka, Zambia.

S. Vermund, G. Parham, B. Shepherd, 2006, Gynecologic oncology.

Risk of Incident Diabetes Mellitus, Weight Gain, and their Relationships with Integrase Inhibitor-based Initial Antiretroviral Therapy Among Persons with HIV in the US and Canada.

Richard D Moore, T. Sterling, M. Gill, 2020, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

Poor Clinical Outcomes for HIV Infected Children on Antiretroviral Therapy in Rural Mozambique: Need for Program Quality Improvement and Community Engagement

S. Vermund, B. Shepherd, M. Sidat, 2014, PloS one.

Outcomes After Second-Line Antiretroviral Therapy in Children Living With HIV in Latin America

P. Rebeiro, V. Rouzier, C. Jenkins, 2021, Journal of acquired immune deficiency syndromes.

Mortality in Children with Human Immunodeficiency Virus Initiating Treatment: A Six‐Cohort Study in Latin America

S. Vermund, V. Rouzier, C. Jenkins, 2017, The Journal of pediatrics.

Enrolment and programmatic trends and predictors of antiretroviral therapy initiation from President's Emergency Plan for AIDS Relief (PEPFAR)-supported public HIV care and treatment sites in rural Mozambique

S. Vermund, B. Shepherd, M. Sidat, 2011, International journal of STD & AIDS.

Incidence of virological failure and major regimen change of initial combination antiretroviral therapy in the Latin America and the Caribbean: an observational cohort study.

P. Cahn, V. Fink, O. Sued, 2015, The lancet. HIV.

Patient Loss to Follow-Up Before Antiretroviral Therapy Initiation in Rural Mozambique

B. Shepherd, M. Blevins, T. Moon, 2015, AIDS and Behavior.

Correlates of Suboptimal Entry Into Early Infant Diagnosis in Rural North Central Nigeria

S. Vermund, M. Aliyu, B. Shepherd, 2014, Journal of acquired immune deficiency syndromes.

High Rates of Viral Suppression and Care Retention Among Youth Born Outside of the United States with Perinatally Acquired HIV

S. Hussen, C. Jenkins, B. Shepherd, 2022, The Pediatric infectious disease journal.

An optimal body mass index range associated with improved immune reconstitution among HIV-infected adults initiating antiretroviral therapy.

T. Sterling, C. Jenkins, B. Shepherd, 2011, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

Virologic failure and mortality in older ART initiators in a multisite Latin American and Caribbean Cohort

P. Cahn, J. Pape, E. Gotuzzo, 2018, Journal of the International AIDS Society.

HIV in the workplace in Botswana: incidence, prevalence, and disease severity.

T. Sterling, E. Riviello, B. Shepherd, 2007, AIDS research and human retroviruses.

Use of Third Line Antiretroviral Therapy in Latin America

P. Cahn, V. Fink, O. Sued, 2014, PloS one.

All-cause mortality in HIV-positive adults starting combination antiretroviral therapy: correcting for loss to follow-up

C. Yiannoutsos, M. Egger, M. Law, 2017, AIDS.

Haemoglobin recovery among HIV-1 infected patients on zidovudine-based antiretroviral therapy and other regimens in north-central Nigeria

S. Vermund, M. Aliyu, B. Shepherd, 2014, International journal of STD & AIDS.

Integrated prevention of mother-to-child HIV transmission services, antiretroviral therapy initiation, and maternal and infant retention in care in rural north-central Nigeria: a cluster-randomised controlled trial.

S. Vermund, M. Lindegren, M. Kalish, 2016, The lancet. HIV.

Comparison of visual inspection with acetic acid and cervical cytology to detect high‐grade cervical neoplasia among HIV‐infected women in India

S. Vermund, C. Jenkins, S. Mehendale, 2012, International journal of cancer.

Late-onset opportunistic infections while receiving anti-retroviral therapy in Latin America: burden and risk factors

T. Sterling, P. Cahn, E. Gotuzzo, 2022, International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases.

Substance Use and Adherence Among People Living with HIV/AIDS Receiving cART in Latin America

P. Rebeiro, R. D. De Boni, E. Gotuzzo, 2016, AIDS and Behavior.

Self-reported dietary intake and appetite predict early treatment outcome among low-BMI adults initiating HIV treatment in sub-Saharan Africa

D. Heimburger, E. Kabagambe, I. Zulu, 2012, Public Health Nutrition.

Postpartum discontinuation of antiretroviral therapy and risk of maternal AIDS-defining events, non-AIDS-defining events, and mortality among a cohort of HIV-1-infected women in the United States.

Sally S Bebawy, T. Sterling, T. Hulgan, 2010, AIDS patient care and STDs.

Impact of Depression and Anxiety on Initiation of Antiretroviral Therapy Among Men Who Have Sex with Men with Newly Diagnosed HIV Infections in China

S. Vermund, Y. Ruan, Y. Shao, 2017, AIDS patient care and STDs.

Clinical and Virologic Outcomes After Changes in First Antiretroviral Regimen at 7 Sites in the Caribbean, Central and South America Network

P. Rebeiro, J. Pape, B. Shepherd, 2016, Journal of acquired immune deficiency syndromes.

Rising Obesity Prevalence and Weight Gain Among Adults Starting Antiretroviral Therapy in the United States and Canada.

Richard D Moore, B. Lau, K. Buchacz, 2016, AIDS research and human retroviruses.

International Congress of Drug Therapy in HIV Infection 23-26 October 2016, Glasgow, UK

Raúl Tabarés Gutiérrez, Samit R. Joshi, H. Jessen, 2016, Journal of the International AIDS Society.

Increased systemic inflammation is associated with cardiac and vascular dysfunction over the first 12 weeks of antiretroviral therapy among undernourished, HIV-infected adults in Southern Africa.

D. Heimburger, S. Filteau, B. Shepherd, 2015, Journal of AIDS & clinical research.

Mortality in Patients with HIV-1 Infection Starting Antiretroviral Therapy in South Africa, Europe, or North America: A Collaborative Analysis of Prospective Studies

Michael Schomaker, Peter Reiss, Amy C. Justice, 2014, PLoS medicine.

A Comparison of Seven Cox Regression-Based Models to Account for Heterogeneity Across Multiple HIV Treatment Cohorts in Latin America and the Caribbean.

S. Koenig, P. Luz, B. Shepherd, 2015, AIDS research and human retroviruses.

Monitoring of HIV treatment in seven countries in the WHO Region of the Americas

P. Cahn, J. Pape, E. Gotuzzo, 2015, Bulletin of the World Health Organization.

Clinical and virologic outcomes after changing first antiretroviral regimen at 7 sites in the Caribbean, Central, and South America Network (CCASAnet)

J. Pape, E. Gotuzzo, B. Grinsztejn, 2013 .

Low CD4/CD8 ratio predicts cancer risk among adults with HIV

Richard D Moore, J. Sun, T. Sterling, 2021 .

HIV and cancer: a comparative retrospective study of Brazilian and U.S. clinical cohorts

T. Sterling, E. Engels, V. Veloso, 2015, Infectious Agents and Cancer.

The Impact of Visual Aids and Enhanced Training on the Delivery of Positive Health, Dignity, and Prevention Messages to Adult Patients Living with HIV in Rural North Central Mozambique

B. Shepherd, M. Blevins, C. Audet, 2015, PloS one.

CD4+/CD8+ ratio, age, and risk of serious noncommunicable diseases in HIV-infected adults on antiretroviral therapy

Sally S Bebawy, T. Sterling, B. Shepherd, 2016, AIDS.

Frequency of non-communicable diseases in people 50 years of age and older receiving HIV care in Latin America

J. Pape, B. Shepherd, B. Crabtree-Ramírez, 2020, PloS one.

Increased non‐AIDS mortality among persons with AIDS‐defining events after antiretroviral therapy initiation

J. Sterne, J. Miro, P. Reiss, 2018, Journal of the International AIDS Society.

Peer counselling versus standard‐of‐care on reducing high‐risk behaviours among newly diagnosed HIV‐positive men who have sex with men in Beijing, China: a randomized intervention study

S. Vermund, J. Simoni, Y. Ruan, 2018, Journal of the International AIDS Society.

Directly observed therapy and risk of unfavourable tuberculosis treatment outcomes among an international cohort of people living with HIV in low‐ and middle‐income countries

M. Yotebieng, L. Diero, T. Sterling, 2019, Journal of the International AIDS Society.

Sex with women among men who have sex with men in China: prevalence and sexual practices.

Lu Yin, Yiming Shao, Bryan E Shepherd, 2013, AIDS patient care and STDs.

Factors Influencing the Statistical Power of Complex Data Analysis Protocols for Molecular Signature Development from Microarray Data

Constantin F. Aliferis, Frank E. Harrell, Jonathan S. Schildcrout, 2009, PloS one.

A 12 week longitudinal study of microbial translocation and systemic inflammation in undernourished HIV-infected Zambians initiating antiretroviral therapy

D. Heimburger, S. Filteau, B. Shepherd, 2014, BMC Infectious Diseases.

Probability‐scale residuals for continuous, discrete, and censored data

Bryan E Shepherd, B. Shepherd, Chun Li, 2016, The Canadian journal of statistics = Revue canadienne de statistique.

Interactive Data Visualization for HIV Cohorts: Leveraging Data Exchange Standards to Share and Reuse Research Tools

Bryan E Shepherd, Meridith Blevins, Firas H Wehbe, 2016, PloS one.

Multiple Mycobacterium antigens induce interferon‐γ production from sarcoidosis peripheral blood mononuclear cells

B. Shepherd, R. Ott, J. Carlisle, 2007, Clinical and experimental immunology.

Optimal management of HIV- positive adults at risk for kidney disease in Nigeria (Renal Risk Reduction “R3” Trial): protocol and study design

P. Kimmel, C. Winkler, T. Ikizler, 2019, Trials.

Lower HIV Risk Among Circumcised Men Who Have Sex With Men in China: Interaction With Anal Sex Role in a Cross-Sectional Study

S. Vermund, Y. Ruan, Y. Shao, 2016, Journal of acquired immune deficiency syndromes.

Improved generalized raking estimators to address dependent covariate and failure‐time outcome error

Thomas Lumley, Pamela A. Shaw, Eric J. Oh, 2020, Biometrical journal. Biometrische Zeitschrift.

The Population Impact of Late Presentation with Advanced HIV Disease and Delayed Antiretroviral Therapy in Adults Receiving HIV Care in Latin America.

P. Rebeiro, J. Pape, V. Rouzier, 2020, American journal of epidemiology.

Race and sex differences in antiretroviral therapy use and mortality among HIV-infected persons in care.

Sally S Bebawy, T. Sterling, T. Hulgan, 2009, The Journal of infectious diseases.

Mortality During the First Year of Potent Antiretroviral Therapy in HIV-1-Infected Patients in 7 Sites Throughout Latin America and the Caribbean

D. Masys, P. Cahn, J. Pape, 2009, Journal of acquired immune deficiency syndromes.

Predicting the long-term impact of voluntary medical male circumcision on HIV incidence among men who have sex with men in Beijing, China

S. Vermund, G. Webb, H. Qian, 2020, AIDS care.

Test of Association Between Two Ordinal Variables While Adjusting for Covariates

B. Shepherd, Chun Li, 2010, Journal of the American Statistical Association.

Brief Report: Assessing and Interpreting the Association Between Continuous Covariates and Outcomes in Observational Studies of HIV Using Splines

P. Rebeiro, B. Shepherd, Peter F. Rebeiro, 2017, Journal of acquired immune deficiency syndromes.

Sexual Risk Reduction for HIV-Infected Persons: A Meta-Analytic Review of “Positive Prevention” Randomized Clinical Trials

S. Vermund, Y. Ruan, Y. Shao, 2014, PloS one.

Daily Marijuana Use is Associated with Missed Clinic Appointments Among HIV-Infected Persons Engaged in HIV Care

Sally S Bebawy, T. Sterling, T. Hulgan, 2017, AIDS and Behavior.

Effects of depression and anxiety on antiretroviral therapy adherence among newly diagnosed HIV-infected Chinese MSM

S. Vermund, Y. Ruan, Y. Shao, 2016, AIDS.

Measuring the Quality of Observational Study Data in an International HIV Research Network

Daniel R. Masys, Cynthia S. Gadd, Bryan E. Shepherd, 2012, PloS one.

Performance of time‐dependent propensity scores: a pharmacoepidemiology case study

W. Ray, B. Shepherd, Qi Liu, 2015, Pharmacoepidemiology and drug safety.

A mechanistic role for type III IFN-λ1 in asthma exacerbations mediated by human rhinoviruses.

S. London, F. Polack, N. Bhat, 2012, American journal of respiratory and critical care medicine.

Covariate‐adjusted Spearman's rank correlation with probability‐scale residuals

Valentine Wanga, B. Shepherd, Qi Liu, 2018, Biometrics.

Health outcomes among HIV-positive Latinos initiating antiretroviral therapy in North America versus Central and South America

Richard D Moore, J. Willig, T. Sterling, 2016, Journal of the International AIDS Society.

Assessing the HIV Care Continuum in Latin America: progress in clinical retention, cART use and viral suppression

P. Cahn, P. Rebeiro, R. D. De Boni, 2016, Journal of the International AIDS Society.

Predictors of Adherence to Antiretroviral Therapy in Rural Zambia

Aniset Kamanga, S. Vermund, C. Jenkins, 2008, Journal of acquired immune deficiency syndromes.

Two‐phase sampling designs for data validation in settings with covariate measurement error and continuous outcome

Pamela A Shaw, Bryan E Shepherd, Thomas Lumley, 2021, Journal of the Royal Statistical Society. Series A,.

Efficient semiparametric inference for two‐phase studies with outcome and covariate measurement errors

Pamela A Shaw, Ran Tao, Sarah C Lotspeich, 2020, Statistics in medicine.

Superior Glucose Tolerance and Metabolomic Profiles, Independent of Adiposity, in HIV-Infected Women Compared With Men on Antiretroviral Therapy

T. Sterling, C. Petucci, C. Jenkins, 2016, Medicine.

ACCOUNTING FOR DEPENDENT ERRORS IN PREDICTORS AND TIME-TO-EVENT OUTCOMES USING ELECTRONIC HEALTH RECORDS, VALIDATION SAMPLES, AND MULTIPLE IMPUTATION.

Guanhua Chen, Bryan E Shepherd, Mark J Giganti, 2020, The annals of applied statistics.

Raking and regression calibration: Methods to address bias from correlated covariate and time‐to‐event error

Thomas Lumley, Eric J. Oh, Bryan E. Shepherd, 2019, Statistics in medicine.

Considerations for analysis of time‐to‐event outcomes measured with error: Bias and correction with SIMEX

Thomas Lumley, Eric J. Oh, Bryan E. Shepherd, 2018, Statistics in medicine.

Implementation and Operational Research: Age Distribution and Determinants of Invasive Cervical Cancer in a “Screen-and-Treat” Program Integrated With HIV/AIDS Care in Zambia

J. Stringer, S. Vermund, G. Parham, 2015, Journal of acquired immune deficiency syndromes.

Tuberculosis Risk Before and After Highly Active Antiretroviral Therapy Initiation: Does HAART Increase the Short-Term TB Risk in a Low Incidence TB Setting?

T. Sterling, P. Rebeiro, A. Pettit, 2011, Journal of acquired immune deficiency syndromes.

A Recombinant Human Monoclonal Antibody to Human Metapneumovirus Fusion Protein That Neutralizes Virus In Vitro and Is Effective Therapeutically In Vivo

D. Burton, J. Crowe, D. Wright, 2007, Journal of Virology.

Utilization of Cervical Cancer Screening Services and Trends in Screening Positivity Rates in a ‘Screen-And-Treat’ Program Integrated with HIV/AIDS Care in Zambia

J. Stringer, S. Vermund, G. Parham, 2013, PloS one.

Early Retention in Care Neither Mediates Nor Modifies the Effect of Sex and Sexual Mode of HIV Acquisition on HIV Survival in the Americas

T. Sterling, P. Rebeiro, V. Veloso, 2018, AIDS patient care and STDs.

Mood disorders and increased risk of non-communicable disease in adults with HIV.

T. Sterling, T. Hulgan, P. Rebeiro, 2020, Journal of acquired immune deficiency syndromes.

Poor retention and care-related sex disparities among youth living with HIV in rural Mozambique

P. Memiah, S. Vermund, M. Aliyu, 2021, PloS one.

Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202

D. Haas, E. Daar, E. Acosta, 2015, Pharmacogenetics and genomics.

Isoniazid-monoresistant tuberculosis is associated with poor treatment outcomes in Durban, South Africa.

T. Sterling, A. Pym, B. Shepherd, 2017, The international journal of tuberculosis and lung disease : the official journal of the International Union against Tuberculosis and Lung Disease.

Weight gain post-ART in HIV+ Latinos/as differs in the USA, Haiti, and Latin America

Richard D Moore, P. Tien, M. Horberg, 2022, Lancet Regional Health. Americas.

Risk factors for symptomatic hyperlactatemia and lactic acidosis among combination antiretroviral therapy-treated adults in Botswana: results from a clinical trial.

Svetlana K. Eden, S. O’Brien, C. Winkler, 2012, AIDS research and human retroviruses.

Sampling designs for HIV molecular epidemiology with application to Honduras.

J. Mullins, A. Rossini, B. Shepherd, 2005, AIDS research and human retroviruses.

GUIDO IMBENS, DONALD RUBIN, Causal Inference for Statistics, Social, and Biomedical Sciences: An Introduction. New York: Cambridge University Press.

B. Shepherd, Bryan E. Shepherd, Ryan Jarrett, 2016, Biometrics.

Factors associated with declining under-five mortality rates from 2000 to 2013: an ecological analysis of 46 African countries

S. Vermund, M. Aliyu, B. Shepherd, 2016, BMJ Open.

Trends in proportion of older HIV-infected people in care in Latin America and the Caribbean: a growing challenge

B. Grinsztejn, B. Shepherd, B. Crabtree-Ramírez, 2018, Epidemiology and Infection.

Clinic-Level Factors Associated with Retention in Care among People Living with HIV in a Multi-Site United States Cohort, 2010-2016.

Richard D Moore, M. Mugavero, P. Rebeiro, 2019, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

Durability of Efavirenz Compared With Boosted Protease Inhibitor-Based Regimens in Antiretroviral-Naïve Patients in the Caribbean and Central and South America

J. Pape, E. Gotuzzo, B. Grinsztejn, 2018, Open forum infectious diseases.

Dolutegravir and pregnancy outcomes in women on antiretroviral therapy in Brazil: a retrospective national cohort study.

V. Veloso, B. Grinsztejn, Ahra Kim, 2021, The lancet. HIV.

Clinical effects of durability of immunosuppression in virologically suppressed ART-initiating persons with HIV in Latin America. A retrospective cohort study

P. Rebeiro, E. Gotuzzo, P. Luz, 2022, Lancet Regional Health. Americas.

Self-audits as alternatives to travel-audits for improving data quality in the Caribbean, Central and South America network for HIV epidemiology

Sarah C. Lotspeich, R. Succi, M. Maia, 2019, Journal of Clinical and Translational Science.

Survival after cancer diagnosis in a cohort of HIV-positive individuals in Latin America

P. Cahn, V. Fink, C. Jenkins, 2018, Infectious Agents and Cancer.

A Pragmatic Approach for Reproducible Research With Sensitive Data.

Bryan E Shepherd, Stephany N Duda, Peter F Rebeiro, 2017, American journal of epidemiology.

Estimating the Optimal CD4 Count for HIV-infected Persons to Start Antiretroviral Therapy

Sally S Bebawy, T. Sterling, T. Hulgan, 2010, Epidemiology.

CD4 Response Up to 5 Years After Combination Antiretroviral Therapy in Human Immunodeficiency Virus-Infected Patients in Latin America and the Caribbean

P. Cahn, P. Rebeiro, J. Pape, 2015, Open forum infectious diseases.

Sensitivity Analysis of Per-Protocol Time-to-Event Treatment Efficacy in Randomized Clinical Trials

M. Hudgens, P. Gilbert, B. Shepherd, 2013, Journal of the American Statistical Association.

Sensitivity Analyses Comparing Time-to-Event Outcomes Existing Only in a Subset Selected Postrandomization

Bryan E Shepherd, Thomas Lumley, Peter B Gilbert, 2007, Journal of the American Statistical Association.

Sensitivity analyses comparing time-to-event outcomes only existing in a subset selected post-randomization, conditional on covariates, with application to HIV vaccine trials

T. Lumley, P. Gilbert, B. Shepherd, 2007 .

Temporal changes in ART initiation in adults with high CD4 counts in Latin America: a cohort study

P. Rebeiro, E. Gotuzzo, V. Veloso, 2019, Journal of the International AIDS Society.

Global Sensitivity Analysis. The Primer by SALTELLI, A., RATTO, M., ANDRES, T., CAMPOLONGO, F., CARIBONI, J., GATELLI, D., SAISANA, M., and TARANTOLA, S

Bryan E. Shepherd, B. Shepherd, 2009 .

Comparing results from multiple imputation and dynamic marginal structural models for estimating when to start antiretroviral therapy

Bryan E Shepherd, Qi Liu, Nathaniel Mercaldo, 2016, Statistics in medicine.

HIV and cancer: a comparative retrospective study of Brazilian and U.S. clinical cohorts

T. Sterling, E. Engels, V. Veloso, 2015, Infectious Agents and Cancer.

The Pediatric Burden of Human Coronaviruses Evaluated for Twenty Years

J. Crowe, K. Edwards, P. Wright, 2009, The Pediatric infectious disease journal.

Older age at first tuberculosis diagnosis is associated with tuberculosis recurrence in HIV-negative persons.

T. Sterling, A. Pym, B. Shepherd, 2018, The international journal of tuberculosis and lung disease : the official journal of the International Union against Tuberculosis and Lung Disease.

Eliciting a Counterfactual Sensitivity Parameter

D. Mehrotra, P. Gilbert, B. Shepherd, 2007 .

Rank‐based principal stratum sensitivity analyses

D. Mehrotra, B. Shepherd, Xiaomin Lu, 2013, Statistics in medicine.

Sensitivity Analyses Comparing Time‐to‐Event Outcomes Only Existing in a Subset Selected Postrandomization and Relaxing Monotonicity

P. Gilbert, B. Shepherd, Charles T. Dupont, 2011, Biometrics.

Sensitivity Analyses Comparing Outcomes Only Existing in a Subset Selected Post‐Randomization, Conditional on Covariates, with Application to HIV Vaccine Trials

Andrea Rotnitzky, Bryan E Shepherd, Peter B Gilbert, 2006, Biometrics.

HIV-1 virologic and immunologic progression and initiation of antiretroviral therapy among HIV-1-infected subjects in a trial of the efficacy of recombinant glycoprotein 120 vaccine.

P. Gilbert, D. Francis, P. Berman, 2005, The Journal of infectious diseases.

Two-phase analysis and study design for survival models with error-prone exposures

Thomas Lumley, Pamela A. Shaw, Bryan E. Shepherd, 2020, Statistical methods in medical research.

T. Sterling, E. Gotuzzo, C. Jenkins, 2019, The international journal of tuberculosis and lung disease : the official journal of the International Union against Tuberculosis and Lung Disease.

Mortality and burden of disease in a cohort of HIV-seropositive adults in Nairobi, Kenya

C. Cohen, C. Mwachari, B. Shepherd, 2004, International journal of STD & AIDS.

Immunodominance of the VH1–46 Antibody Gene Segment in the Primary Repertoire of Human Rotavirus-Specific B Cells Is Reduced in the Memory Compartment through Somatic Mutation of Nondominant Clones1

J. Crowe, J. Higginbotham, B. Shepherd, 2008, The Journal of Immunology.

The Effects of Perceived Stress and Cortisol Concentration on Antiretroviral Adherence When Mediated by Psychological Flexibility Among Southern Black Men Living with HIV

H. Myers, B. Shepherd, L. L. Brown, 2020, AIDS and Behavior.

Mood Disorders and Increased Risk of Noncommunicable Disease in Adults With HIV.

T. Sterling, T. Hulgan, P. Rebeiro, 2020 .

The impact of data quality and source data verification on epidemiologic inference: a practical application using HIV observational data

P. Rebeiro, P. Luz, M. Maia, 2019, BMC Public Health.

Post-randomization Biomarker Effect Modification Analysis in an HIV Vaccine Clinical Trial

M. Hudgens, P. Gilbert, B. Shepherd, 2020, Journal of causal inference.

Body mass index and the risk of incident noncommunicable diseases after starting antiretroviral therapy

Sally S Bebawy, T. Sterling, C. Jenkins, 2015, HIV medicine.

Analysis of Error-prone Electronic Health Records with Multi-wave Validation Sampling: Association of Maternal Weight Gain during Pregnancy with Childhood Outcomes

Thomas Lumley, Bryan E. Shepherd, Stephany N. Duda, 2021, 2109.14001.

Optimum Allocation for Adaptive Multi-Wave Sampling in R: The R Package optimall

Thomas Lumley, Bryan E. Shepherd, Pamela A. Shaw, 2021, 2106.09494.

Monitoring the performance of “screen‐and‐treat” cervical cancer prevention programs

J. Stringer, S. Vermund, G. Parham, 2014, International journal of gynaecology and obstetrics: the official organ of the International Federation of Gynaecology and Obstetrics.

Dolutegravir and pregnancy outcomes among women on ART in Brazil: A national cohort study Dolutegravir

Veloso, B. Grinsztejn, Ahra Kim, 2021 .

Timing of Antiretroviral Treatment, Immunovirologic Status, and TB Risk: Implications for Testing and Treatment

Richard D Moore, T. Sterling, D. Dowdy, 2016, Journal of acquired immune deficiency syndromes.

Asymptotic Properties for Cumulative Probability Models for Continuous Outcomes

D. Zeng, Chun Xing Li, B. Shepherd, 2022, Mathematics.

Low rates of contraception use in women with HIV

T. Sterling, B. Shepherd, A. Bian, 2022, Open Forum Infectious Diseases.

Development and Validation of a Multivariable Prediction Model for Missed HIV Health Care Provider Visits in a Large US Clinical Cohort

Richard D Moore, M. Mugavero, A. Pettit, 2021, Open forum infectious diseases.

Nutrition and inflammation serum biomarkers are associated with 12-week mortality among malnourished adults initiating antiretroviral therapy in Zambia

D. Heimburger, E. Kabagambe, I. Zulu, 2011, Journal of the International AIDS Society.

Optimal multiwave validation of secondary use data with outcome and exposure misclassification

Ran Tao, Bryan E. Shepherd, Sarah C. Lotspeich, 2021, Canadian Journal of Statistics.

Efficient odds ratio estimation under two‐phase sampling using error‐prone data from a multi‐national HIV research cohort

Sarah C. Lotspeich, P. Shaw, R. Tao, 2021, Biometrics.

Higher Time-Updated Body Mass Index: Association With Improved CD4+ Cell Recovery on HIV Treatment

Richard D Moore, B. Lau, W. Wester, 2016, Journal of acquired immune deficiency syndromes.

Does douching increase risk for sexually transmitted infections? A prospective study in high-risk adolescents.

S. Vermund, B. Shepherd, Cynthia Tsai, 2009, American journal of obstetrics and gynecology.

Coverage of IMIA-recommended Competencies by Masters in Health Informatics Degree Programs in East Africa

Martin C Were, Ada Yeung, Bryan E Shepherd, 2020, Int. J. Medical Informatics.

The cost of checking proportional hazards

Bryan E Shepherd, B. Shepherd, 2008, Statistics in medicine.

A new residual for ordinal outcomes.

Chun Li, Bryan E Shepherd, Chun Xing Li, 2012, Biometrika.

Hematopoietic stem-cell behavior in nonhuman primates.

P. Guttorp, J. Abkowitz, P. Lansdorp, 2007, Blood.

Sex with women among men who have sex with men in China: prevalence and sexual practices.

S. Vermund, Y. Ruan, Y. Shao, 2013, AIDS patient care and STDs.

A Pragmatic Approach for Reproducible Research With Sensitive Data.

B. Shepherd, C. McGowan, S. Duda, 2017, American journal of epidemiology.

Rank intraclass correlation for clustered data

D. Zeng, Chun Xing Li, B. Shepherd, 2023, Statistics in medicine.

Bayesian Cumulative Probability Models for Continuous and Mixed Outcomes

Frank E. Harrell, Bryan E. Shepherd, Nathan T. James, 2021, 2102.00330.

Cellular Responses to Mycobacterial Antigens Are Present in Bronchoalveolar Lavage Fluid Used in the Diagnosis of Sarcoidosis

C. Hawkins, W. Drake, C. Jenkins, 2009, Infection and Immunity.

Cellular Recognition of Mycobacterium tuberculosis ESAT-6 and KatG Peptides in Systemic Sarcoidosis

S. Kalams, W. Drake, L. Newman, 2006, Infection and Immunity.

Discussion of ‘regularized regression for categorical data’

B. Shepherd, Qi Liu, 2016, Statistical modelling.

The Role of External Genital Lesions in Human Immunodeficiency Virus Seroconversion Among Men Participating in a Multinational Study

Sarah C. Lotspeich, A. Giuliano, J. Messina, 2021, Sexually transmitted diseases.

Higher rates of AIDS during the first year of antiretroviral therapy among migrants: the importance of tuberculosis

J. Sterne, T. Sterling, M. May, 2013, AIDS.

Cryptococcal Meningitis and Clinical Outcomes in Persons with HIV: A Global View.

G. Wandeler, V. Veloso, D. Imran, 2023, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

The Pediatric Burden of Human Coronaviruses Evaluated for Twenty Years

J. Crowe, P. Wright, M. Griffin, 2009, The Pediatric infectious disease journal.