Gül H. Zerze

发表

Free energy surface of an intrinsically disordered protein: comparison between temperature replica exchange molecular dynamics and bias-exchange metadynamics.

J. Mittal, D. Granata, Gül H. Zerze, 2015, Journal of chemical theory and computation.

OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA , 113 ( 17 ) ISSN 0027-8424

J. Israelachvili, J. Waite, Chun Wu, 2016 .

Evolution of All-Atom Protein Force Fields to Improve Local and Global Properties.

R. Best, Wenwei Zheng, J. Mittal, 2019, The journal of physical chemistry letters.

Second critical point in two realistic models of water

P. Debenedetti, F. Sciortino, Gül H. Zerze, 2020, Science.

Recombinant protein production in Pichia pastoris under glyceraldehyde-3-phosphate dehydrogenase promoter: From carbon source metabolism to bioreactor operation parameters

P. Çalık, A. Massahi, Gül H. Zerze, 2015 .

Effect of O-Linked Glycosylation on the Equilibrium Structural Ensemble of Intrinsically Disordered Polypeptides.

J. Mittal, Gül H. Zerze, 2015, The journal of physical chemistry. B.

Inferring properties of disordered chains from FRET transfer efficiencies.

Alessandro Borgia, R. Best, B. Schuler, 2018, The Journal of chemical physics.

Computational Investigation of the Effect of Backbone Chiral Inversions on Polypeptide Structure

F. Stillinger, P. Debenedetti, Gül H. Zerze, 2019, Biophysical Journal.

Thermodynamics of DNA Hybridization from Atomistic Simulations

F. Stillinger, P. Debenedetti, Gül H. Zerze, 2020, bioRxiv.

TDP-43 α-helical structure tunes liquid–liquid phase separation and function

Nicolas L. Fawzi, Young C. Kim, J. Mittal, 2020, Proceedings of the National Academy of Sciences.

Computational modeling highlights disordered Formin Homology 1 domain’s role in profilin-actin transfer

Young C. Kim, J. Mittal, Gül H. Zerze, 2018, bioRxiv.

Effect of heterochiral inversions on the structure of a β‐hairpin peptide

F. Stillinger, P. Debenedetti, Gül H. Zerze, 2019, Proteins.

Supplemental Information ALS Mutations Disrupt Phase Separation Mediated by a-Helical Structure in the TDP-43 Low-Complexity C-Terminal Domain

Nicolas L. Fawzi, J. Mittal, Gül H. Zerze, 2016 .

Computational investigation of retro‐isomer equilibrium structures: Intrinsically disordered, foldable, and cyclic peptides

F. Stillinger, P. Debenedetti, Gül H. Zerze, 2020, FEBS letters.

Optimizing the Martini 3 force field reveals the effects of the intricate balance between protein-water interaction strength and salt concentration on biomolecular condensate formation

Gül H. Zerze, 2022, bioRxiv.

Correlation of Helical Propensity in Amylin Sequences with Known Aggregation Propensity

J. Mittal, Gül H. Zerze, Cayla M. Miller, 2014 .

Modest influence of FRET chromophores on the properties of unfolded proteins.

R. Best, J. Mittal, Gül H. Zerze, 2014, Biophysical journal.

Phosphorylation of the FUS low‐complexity domain disrupts phase separation, aggregation, and toxicity

Nicolas L. Fawzi, R. Cole, F. Shewmaker, 2017, The EMBO journal.

TDP-43 α-helical structure tunes liquid–liquid phase separation and function

Nicolas L. Fawzi, Young C. Kim, J. Mittal, 2019, Proceedings of the National Academy of Sciences.

Molecular interactions underlying liquid-liquid phase separation of the FUS low complexity domain

Nicolas L. Fawzi, Anastasia C. Murthy, J. Mittal, 2019, Nature Structural & Molecular Biology.

ALS Mutations Disrupt Phase Separation Mediated by α-Helical Structure in the TDP-43 Low-Complexity C-Terminal Domain.

Nicolas L. Fawzi, J. Mittal, Gül H. Zerze, 2016, Structure.

To What Extent Does Surface Hydrophobicity Dictate Peptide Folding and Stability near Surfaces?

J. Mittal, J. Shea, Z. Levine, 2015, Langmuir : the ACS journal of surfaces and colloids.

Effect of co‐substrate sorbitol different feeding strategies on human growth hormone production by recombinant Pichia pastoris

Mehmet A. Orman, P. Çalık, Bahar Inankur, 2013 .

Highly Disordered Amyloid-β Monomer Probed by Single-Molecule FRET and MD Simulation.

R. Best, Jae-Yeol Kim, Fanjie Meng, 2018, Biophysical journal.

A carbon nanotube reporter of microRNA hybridization events in vivo

Jeetain Mittal, Daniel A Heller, Prakrit V. Jena, 2017, Nature Biomedical Engineering.

Molecular interactions underlying liquid-liquid phase separation of the FUS low complexity domain

Nicolas L. Fawzi, Anastasia C. Murthy, J. Mittal, 2019, Nature Structural & Molecular Biology.

Folding thermodynamics of β‐hairpins studied by replica‐exchange molecular dynamics simulations

J. Mittal, Gül H. Zerze, Bilge Uz, 2015, Proteins.

Sequence- and Temperature-Dependent Properties of Unfolded and Disordered Proteins from Atomistic Simulations.

Robert B Best, Jeetain Mittal, R. Best, 2015, The journal of physical chemistry. B.

Computational modeling highlights the role of the disordered Formin Homology 1 domain in profilin‐actin transfer

Young C. Kim, J. Mittal, D. Vavylonis, 2018, FEBS letters.

Electrostatic Screening Modulates Analyte Binding and Emission of Carbon Nanotubes

J. Mittal, D. Heller, Jackson D Harvey, 2018 .

Mechanistic View of hnRNPA2 Low-Complexity Domain Structure, Interactions, and Phase Separation Altered by Mutation and Arginine Methylation.

Nicolas L. Fawzi, J. Mittal, K. Burke, 2018, Molecular cell.

Methanol feeding strategy design enhances recombinant human growth hormone production by Pichia pastoris

P. Çalık, Gül H. Zerze, T. Özdamar, 2016 .

Molecular simulations indicate marked differences in the structure of amylin mutants, correlated with known aggregation propensity.

Jeetain Mittal, J. Mittal, Gül H. Zerze, 2013, The journal of physical chemistry. B.

Interplay Between Membrane Composition and Structural Stability of Membrane-Bound hIAPP.

J. Mittal, Gül H. Zerze, G. Dignon, 2017, The journal of physical chemistry. B.

Diffusive Dynamics of Contact Formation in Disordered Polypeptides.

R. Best, J. Mittal, Gül H. Zerze, 2015, Physical review letters.

Figures and Appendix Supplementary Methods : Phosphorylation of FUS low-complexity domain disrupts phase separation , aggregation , and toxicity 1

Nicolas L. Fawzi, R. Cole, F. Shewmaker, 2017 .

Free energy surface of an intrinsically disordered protein: comparison between temperature replica exchange molecular dynamics and bias-exchange metadynamics.

J. Mittal, D. Granata, Gül H. Zerze, 2015, Journal of chemical theory and computation.

Inferring properties of disordered chains from FRET transfer efficiencies.

Alessandro Borgia, R. Best, B. Schuler, 2018, The Journal of chemical physics.

Comparison of On-the-Fly Probability Enhanced Sampling and Parallel Tempering Combined with Metadynamics for Atomistic Simulations of RNA Tetraloop Folding.

P. Piaggi, Gül H. Zerze, Kosar Rahimi, 2023, Journal of Physical Chemistry B.

A Deep Learning-Driven Sampling Technique to Explore the Phase Space of an RNA Stem-Loop

Gül H. Zerze, Heng Ma, Arvind Ramanathan, 2024, bioRxiv.

A Computational Study of RNA Tetraloop Thermodynamics, Including Misfolded States.

P. Debenedetti, P. Piaggi, Gül H. Zerze, 2021, The journal of physical chemistry. B.