I. Tolokh

发表

Spermine Condenses DNA, but Not RNA Duplexes.

Nathan A. Baker, A. Onufriev, L. Pollack, 2017, Biophysical journal.

Charge hydration asymmetry: the basic principle and how to use it to test and improve water models.

Andrew T. Fenley, Andrew T Fenley, Alexey V Onufriev, 2012, The journal of physical chemistry. B.

Introducing Charge Hydration Asymmetry into the Generalized Born Model

A. Onufriev, B. Aguilar, I. Tolokh, 2014, Journal of chemical theory and computation.

Why double-stranded RNA resists condensation

Nathan A. Baker, A. Onufriev, L. Pollack, 2014, Nucleic acids research.

Explicit ions/implicit water generalized Born model for nucleic acids.

A. Onufriev, Dennis G. Thomas, I. Tolokh, 2018, The Journal of chemical physics.

Nature of the stacking of nucleic acid bases in water: a Monte Carlo simulation.

V. Danilov, I. Tolokh, 1984, Journal of biomolecular structure & dynamics.

Binding free energy and counterion release for adsorption of the antimicrobial peptide lactoferricin B on a POPG membrane.

I. Tolokh, C. Gray, B. Tomberli, 2009, Physical review. E, Statistical, nonlinear, and soft matter physics.

Prediction of binding free energy for adsorption of antimicrobial peptide lactoferricin B on a POPC membrane.

I. Tolokh, C. Gray, B. Tomberli, 2008, Physical review. E, Statistical, nonlinear, and soft matter physics.

Electron-transfer properties of quantum molecular wires

I. Tolokh, E. Petrov, A. A. Demidenko, 1995 .

Hydration of uracil and thymine methylderivatives: a Monte Carlo simulation.

V. Danilov, I. Tolokh, 1990, Journal of biomolecular structure & dynamics.

Strong interactions between highly dynamic lamina-associated domains and the nuclear envelope stabilize the 3D architecture of Drosophila interphase chromatin

A. Onufriev, I. Sharakhov, N. A. Kinney, 2022, bioRxiv.

Understanding nucleic acid structural changes by comparing wide-angle x-ray scattering (WAXS) experiments to molecular dynamics simulations.

Nathan A. Baker, A. Onufriev, L. Pollack, 2015, The Journal of chemical physics.

Hydration of uracil and thymine metliylderivatives: Monte Carlo simulation

V. Danilov, I. Tolokh, 1989 .

The probability of chromatin to be at the nuclear lamina has no systematic effect on its transcription level

A. Onufriev, I. Sharakhov, I. Tolokh, 2022, bioRxiv.

Multi-shell model of ion-induced nucleic acid condensation.

Nathan A. Baker, A. Onufriev, L. Pollack, 2016, The Journal of chemical physics.

Magnetic field control of an electron tunnel current through a molecular wire

V. May, I. Tolokh, E. Petrov, 1998 .

The magnetic-field influence on the inelastic electron tunnel current mediated by a molecular wire

V. May, I. Tolokh, E. Petrov, 1998 .

Blocking of bridge-mediated electron transfer by an external magnetic field

V. May, I. Tolokh, E. Petrov, 1998 .

The magnetic field influence on bridge-assisted electron transfer

V. May, I. Tolokh, E. Petrov, 1997 .

Magnetic Field Control of Electron Motion in Molecular Nanostructures: Steplike Behavior and Spin Polarization of a Bridge-Assisted Interelectrode Current

V. May, I. Tolokh, E. Petrov, 1997 .

Accurate evaluation of charge asymmetry in aqueous solvation.

A. Onufriev, I. Tolokh, A. Mukhopadhyay, 2015, The journal of physical chemistry. B.

Opposing Effects of Multivalent Ions on the Flexibility of DNA and RNA.

Nathan A. Baker, A. Onufriev, L. Pollack, 2016, Physical review letters.

Conduction through the Inward Rectifier Potassium Channel, Kir2.1, Is Increased by Negatively Charged Extracellular Residues

H. Cho, P. Backx, N. D'Avanzo, 2005, The Journal of general physiology.

Nature of the stacking interaction of nucleotide bases in water: a Monte Carlo study of the hydration of uracil molecule associates

V. Danilov, I. Tolokh, G. Malenkov, 1984 .

Prediction of ion channel transport from Grote—Hynes and Kramers theories

I. Tolokh, C. Gray, S. Goldman, 2002 .

Nature of the stacking of nucleic acid bases in water: A Monte Carlo study☆

V. Danilov, I. Tolokh, 1985 .

Understanding nucleic acid structural changes by comparing wide-angle x-ray scattering (WAXS) experiments to molecular dynamics simulations.

Nathan A. Baker, A. Onufriev, L. Pollack, 2015, The Journal of chemical physics.

Why double-stranded RNA resists condensation

Nathan A. Baker, A. Onufriev, L. Pollack, 2014, Nucleic acids research.

Simulation study of solvent shifts of vibrational overtone spectra

I. Tolokh, C. Gray, S. Goldman, 2004 .

Accurate evaluation of charge asymmetry in aqueous solvation.

A. Onufriev, I. Tolokh, A. Mukhopadhyay, 2015, The journal of physical chemistry. B.

Nature of nucleotide base associations in water: the Monte Carlo simulation of the hydration of pyrimidine bases and their molecular associates

V. Danilov, I. Tolokh, 1985 .

The probability of chromatin to be at the nuclear lamina has no systematic effect on its transcription level in fruit flies

A. Onufriev, I. Sharakhov, I. Tolokh, 2024, Epigenetics & chromatin.

The probability of chromatin to be at the nuclear lamina has no systematic effect on its transcription level in fruit fly

A. Onufriev, I. Sharakhov, I. Tolokh, 2022, bioRxiv.

Inclusion of Water Multipoles into the Implicit Solvation Framework Leads to Accuracy Gains

A. Onufriev, I. Tolokh, Dan E Folescu, 2024, The journal of physical chemistry. B.

Improving the Accuracy of Physics-Based Hydration-Free Energy Predictions by Machine Learning the Remaining Error Relative to the Experiment.

A. Karpatne, A. Onufriev, I. Tolokh, 2023, Journal of chemical theory and computation.