D. Miyoshi

发表

DNA logic gates based on structural polymorphism of telomere DNA molecules responding to chemical input signals.

N. Sugimoto, D. Miyoshi, Mamiko Inoue, 2006, Angewandte Chemie.

Detection of a Prognostic Indicator in Early‐Stage Cancer Using Functionalized Graphene‐Based Peptide Sensors

N. Sugimoto, X. Qu, J. Ren, 2012, Advanced materials.

Ultrasensitive and Selective Detection of a Prognostic Indicator in Early‐Stage Cancer Using Graphene Oxide and Carbon Nanotubes

N. Sugimoto, X. Qu, J. Ren, 2010 .

Composite of Au nanoparticles and molecularly imprinted polymer as a sensing material.

N. Sugimoto, J. Matsui, D. Miyoshi, 2004, Analytical chemistry.

Molecular imprinting under molecular crowding conditions: an aid to the synthesis of a high-capacity polymeric sorbent for triazine herbicides.

N. Sugimoto, J. Matsui, D. Miyoshi, 2007, Analytical chemistry.

An approach to peptide-based ATP receptors by a combination of random selection, rational design, and molecular imprinting.

N. Sugimoto, J. Matsui, D. Miyoshi, 2009, Biosensors & bioelectronics.

Unexpected Position-Dependent Effects of Ribose G-Quartets in G-Quadruplexes.

N. Sugimoto, Wei Wang, G. Salgado, 2017, Journal of the American Chemical Society.

A simple "add and measure" FRET-based telomeric tandem repeat sequence detection and telomerase assay method.

D. Miyoshi, T. Murashima, Koji Kawamura, 2014, Organic & biomolecular chemistry.

A fluorescent probe for detection of an intracellular prognostic indicator in early-stage cancer.

N. Sugimoto, X. Qu, J. Ren, 2015, Chemical communications.

In vitro assays predictive of telomerase inhibitory effect of G-quadruplex ligands in cell nuclei.

N. Sugimoto, D. Miyoshi, T. Murashima, 2014, The journal of physical chemistry. B.

A Highly Sensitive Telomerase Activity Assay that Eliminates False-Negative Results Caused by PCR Inhibitors

N. Sugimoto, D. Miyoshi, T. Murashima, 2013, Molecules.

A Stable DNA Tetraloop and Its Structural Tolerance for Modification

N. Sugimoto, M. Yoneyama, J. Kawakami, 2001 .

Hammerhead ribozyme activity and oligonucleotide duplex stability in mixed solutions of water and organic compounds

N. Sugimoto, S. Nakano, D. Miyoshi, 2014, FEBS open bio.

An anionic phthalocyanine decreases NRAS expression by breaking down its RNA G-quadruplex

N. Sugimoto, D. Miyoshi, K. Murata, 2018, Nature Communications.

Beads-on-a-string structure of long telomeric DNAs under molecular crowding conditions.

N. Sugimoto, S. Nakano, D. Miyoshi, 2012, Journal of the American Chemical Society.

Sole and stable RNA duplexes of G-rich sequences located in the 5'-untranslated region of protooncogenes.

N. Sugimoto, D. Miyoshi, S. Saxena, 2010, Biochemistry.

Novel Strategy of Photodynamic Therapy Targeting RAS mRNA with G-Quadruplex Ligands for Cancer Treatment

D. Miyoshi, K. Kawauchi, Wataru Sugimoto, 2020 .

Intramolecular G-quadruplex-hairpin loop structure competition of a GC-rich exon region in the TMPRSS2 gene.

N. Sugimoto, T. Nishikata, D. Miyoshi, 2021, Chemical communications.

Combined Effects of Methylated Cytosine and Molecular Crowding on the Thermodynamic Stability of DNA Duplexes

N. Sugimoto, D. Miyoshi, Mitsuki Tsuruta, 2021, International journal of molecular sciences.

Structural transition from antiparallel to parallel G-quadruplex of d(G4T4G4) induced by Ca2+.

N. Sugimoto, A. Nakao, D. Miyoshi, 2003, Nucleic acids research.

Development of small peptides recognizing a monosaccharide by combinatorial chemistry

N. Sugimoto, D. Miyoshi, J. Zou, 2000 .

Synthesis, structure and thermal stability of fully hydrophobic porphyrin–DNA conjugates

N. Sugimoto, J. Matsui, D. Miyoshi, 2007 .

Effect of molecular crowding on DNA polymerase activity

N. Sugimoto, D. Miyoshi, Y. Sasaki, 2006, Biotechnology journal.

Effect of Putrescine and PEG on a Structural Transition of DNA G-Quadruplex

N. Sugimoto, A. Nakao, D. Miyoshi, 2003, Nucleosides, nucleotides & nucleic acids.

Characterization of structure and stability of long telomeric DNA G-quadruplexes.

N. Sugimoto, D. Miyoshi, Hai-qing Yu, 2006, Journal of the American Chemical Society.

A rapid and sensitive "add-mix-measure" assay for multiple proteinases based on one gold nanoparticle-peptide-fluorophore conjugate.

N. Sugimoto, X. Qu, J. Ren, 2010, Biosensors & bioelectronics.

Drastic Stabilization of Parallel DNA Hybridizations by a Polylysine Comb‐Type Copolymer with Hydrophilic Graft Chain

N. Sugimoto, A. Maruyama, S. Nakano, 2014, ChemMedChem.

Detection of Intracellular Reactive Oxidative Species Using the Fluorescent Probe Hydroxyphenyl Fluorescein.

D. Miyoshi, K. Kawauchi, Wataru Sugimoto, 2021, Methods in molecular biology.

An Unified Statistical Procedure to Analyse Irreversible Thermal Curves

Sanjay Chaudhuri, S. Maiti, G. S. Kumar, 2022, 2209.03957.

Stabilization of DNA Structures with Poly(ethylene sodium phosphate).

Y. Iwasaki, D. Miyoshi, Rui Moriyama, 2015, The journal of physical chemistry. B.

Reevaluation of the stability of G-quadruplex structures under crowding conditions.

N. Sugimoto, J. Mergny, Can Li, 2016, Biochimie.

Controlling liquid-liquid phase separation of G-quadruplex-forming RNAs in a sequence-specific manner.

N. Sugimoto, D. Miyoshi, K. Kawauchi, 2022, Chemical communications.

Monomorphic RNA G-quadruplex and polymorphic DNA G-quadruplex structures responding to cellular environmental factors.

N. Sugimoto, D. Miyoshi, S. Saxena, 2010, Biochemistry.

Effect of locked nucleic acid modifications on the thermal stability of noncanonical DNA structure.

N. Sugimoto, S. Nakano, S. Maiti, 2011, Biochemistry.

Effects of background anionic compounds on the activity of the hammerhead ribozyme in Mg2+-unsaturated solutions

N. Sugimoto, S. Nakano, D. Miyoshi, 2015, JBIC Journal of Biological Inorganic Chemistry.

Molecular crowding regulates the structural switch of the DNA G-quadruplex.

N. Sugimoto, A. Nakao, D. Miyoshi, 2002, Biochemistry.

Hydration regulates thermodynamics of G-quadruplex formation under molecular crowding conditions.

N. Sugimoto, D. Miyoshi, H. Karimata, 2006, Journal of the American Chemical Society.

Effects of molecular crowding on the structures, interactions, and functions of nucleic acids.

N. Sugimoto, S. Nakano, D. Miyoshi, 2014, Chemical reviews.

DNA G-Wire Formation Using an Artificial Peptide is Controlled by Protease Activity

S. Nakano, K. Usui, Y. Hamada, 2017, Molecules.

Artificial G-wire switch with 2,2'-bipyridine units responsive to divalent metal ions.

N. Sugimoto, Kazuya Koumoto, D. Miyoshi, 2007, Journal of the American Chemical Society.

Significant structural change in human c-Myc promoter G-quadruplex upon peptide binding in potassium

Aklank Jain, Vinit Kumar, D. Miyoshi, 2022, RSC advances.

Anionic phthalocyanines targeting G-quadruplexes and inhibiting telomerase activity in the presence of excessive DNA duplexes.

N. Sugimoto, D. Miyoshi, T. Murashima, 2010, Chemical communications.

Effects of trimethylamine N-oxide and urea on DNA duplex and G-quadruplex

N. Sugimoto, A. Maruyama, S. Nakano, 2016, Science and technology of advanced materials.

RNA phase separation–mediated direction of molecular trafficking under conditions of molecular crowding

D. Miyoshi, Kazuki Kohata, 2020, Biophysical Reviews.

Structural competition involving G-quadruplex DNA and its complement.

N. Sugimoto, S. Nakano, D. Miyoshi, 2003, Biochemistry.

DNA-based biosensor for monitoring pH in vitro and in living cells.

Naoki Sugimoto, Daisuke Miyoshi, N. Sugimoto, 2005, Biochemistry.

Effects of Cosolvents on the Folding and Catalytic Activities of the Hammerhead Ribozyme

N. Sugimoto, S. Nakano, D. Miyoshi, 2015, Chembiochem : a European journal of chemical biology.

Dimerization of nucleic acid hairpins in the conditions caused by neutral cosolutes.

N. Sugimoto, S. Nakano, D. Miyoshi, 2012, The journal of physical chemistry. B.

Molecular crowding effects on structure and stability of DNA.

N. Sugimoto, D. Miyoshi, 2008, Biochimie.

Thermodynamics-hydration relationships within loops that affect G-quadruplexes under molecular crowding conditions.

N. Sugimoto, S. Nakano, D. Miyoshi, 2013, The journal of physical chemistry. B.

Molecular crowding and hydration regulating of G-quadruplex formation.

N. Sugimoto, D. Miyoshi, Takeshi Fujimoto, 2013, Topics in current chemistry.

The Effects of Molecular Crowding on the Structure and Stability of G-Quadruplexes with an Abasic Site

N. Sugimoto, S. Nakano, D. Miyoshi, 2011, Journal of nucleic acids.

Thermodynamic stability of Hoogsteen and Watson-Crick base pairs in the presence of histone H3-mimicking peptide.

N. Sugimoto, S. Nakano, J. Matsui, 2011, Chemical communications.

Hydration of Watson-Crick base pairs and dehydration of Hoogsteen base pairs inducing structural polymorphism under molecular crowding conditions.

N. Sugimoto, T. Ohmichi, D. Miyoshi, 2009, Journal of the American Chemical Society.

Drastic effect of a single base difference between human and tetrahymena telomere sequences on their structures under molecular crowding conditions.

Naoki Sugimoto, Daisuke Miyoshi, N. Sugimoto, 2005, Angewandte Chemie.

Phthalocyanines: a new class of G-quadruplex-ligands with many potential applications.

N. Sugimoto, D. Miyoshi, T. Murashima, 2012, Chemical communications.

Duplex dissociation of telomere DNAs induced by molecular crowding.

N. Sugimoto, S. Nakano, D. Miyoshi, 2004, Journal of the American Chemical Society.

Stabilization of three-way junctions of DNA under molecular crowding conditions.

N. Sugimoto, D. Miyoshi, S. Muhuri, 2009, Journal of the American Chemical Society.

Dangling Ends Perturb the Stability of RNA Duplexes Responsive to Surrounding Conditions

N. Sugimoto, S. Nakano, D. Miyoshi, 2014, ChemMedChem.

Hydration changes upon DNA folding studied by osmotic stress experiments.

N. Sugimoto, S. Nakano, D. Miyoshi, 2012, Biophysical journal.

Highly Sensitive Telomerase Assay Insusceptible to Telomerase and Polymerase Chain Reaction Inhibitors for Cervical Cancer Screening Using Scraped Cells.

H. Okazawa, D. Miyoshi, Y. Kiyono, 2017, Analytical chemistry.

A mRNA-Responsive G-Quadruplex-Based Drug Release System

Naoki Sugimoto, Takashi Murashima, Daisuke Miyoshi, 2015, Sensors.

Study on effects of molecular crowding on G-quadruplex-ligand binding and ligand-mediated telomerase inhibition.

N. Sugimoto, S. Nakano, D. Miyoshi, 2013, Methods.

Specific Binding of Anionic Porphyrin and Phthalocyanine to the G-Quadruplex with a Variety of in Vitro and in Vivo Applications

N. Sugimoto, D. Miyoshi, T. Murashima, 2012, Molecules.

Hydroxyl groups in cosolutes regulate the G-quadruplex topology of telomeric DNA.

N. Sugimoto, S. Nakano, D. Miyoshi, 2020, Biochemical and biophysical research communications.

Reduced graphene oxide upconversion nanoparticle hybrid for electrochemiluminescent sensing of a prognostic indicator in early-stage cancer.

Xiaogang Qu, Jiasi Wang, Naoki Sugimoto, 2014, Small.

Hydration Regulates The Thermodynamic Stability Of Dna Structures Under Molecular Crowding Conditions

N. Sugimoto, D. Miyoshi, H. Karimata, 2007, Nucleosides, nucleotides & nucleic acids.

Development of new functional nanostructures consisting of both DNA duplex and quadruplex.

N. Sugimoto, D. Miyoshi, Mamiko Inoue, 2010, Chemical communications.

Effect of divalent cations on antiparallel G‐quartet structure of d(G4T4G4)

N. Sugimoto, A. Nakao, D. Miyoshi, 2001, FEBS letters.

Multiple and cooperative binding of fluorescence light-up probe thioflavin T with human telomere DNA G-quadruplex.

Takeshi Fujimoto, Naoki Sugimoto, Takashi Murashima, 2013, Biochemistry.

Small‐Molecule‐Directed Assembly: A Gold Nanoparticle‐Based Strategy for Screening of Homo‐Adenine DNA Duplex Binders

N. Sugimoto, X. Qu, J. Ren, 2008 .

α-β Structural Transition of Short Oligopeptides by Water/Organic Solvent Titration

N. Sugimoto, D. Miyoshi, J. Zou, 1999 .

Artificial turn-on riboswitch to control target gene expression using a wild-type riboswitch splicing mechanism.

N. Sugimoto, D. Miyoshi, T. Kubodera, 2020, Journal of bioscience and bioengineering.

Riboswitches for Enhancing Target Gene Expression in Eukaryotes

N. Sugimoto, A. Nishimura, D. Miyoshi, 2008, Chembiochem : a European journal of chemical biology.

Roles of Mg2+ in TPP‐dependent riboswitch

Akira Nishimura, Naoki Sugimoto, Daisuke Miyoshi, 2005, FEBS letters.

Selective recognition of human telomeric G-quadruplex with designed peptide via hydrogen bonding followed by base stacking interactions

A. Chakraborty, D. Miyoshi, S. Tyagi, 2019, RSC advances.

Selective and Robust Stabilization of Triplex DNA Structures Using Cationic Comb-type Copolymers.

A. Maruyama, Naohiko Shimada, A. Murakami, 2017, The journal of physical chemistry. B.

SPR sensor chip for detection of small molecules using molecularly imprinted polymer with embedded gold nanoparticles.

Noriaki Hara, Naoki Sugimoto, Katsuyuki Tamaki, 2005, Analytical chemistry.

Regulation of telomerase activity by the thermodynamic stability of a DNA x RNA hybrid.

N. Sugimoto, D. Miyoshi, Hai-qing Yu, 2008, Angewandte Chemie.

Structural and Functional Characterization of RecG Helicase under Dilute and Molecular Crowding Conditions

N. Sugimoto, S. Nagatoishi, D. Miyoshi, 2012, Journal of nucleic acids.

Biomolecular Liquid–Liquid Phase Separation for Biotechnology

D. Miyoshi, K. Kawauchi, Mitsuki Tsuruta, 2023, Biotech (Basel (Switzerland)).

Utilization of Salmon Milt DNA Against UV Damage

N. Sugimoto, D. Miyoshi, Y. Sasaki, 2010, Applied biochemistry and biotechnology.

Measurements of the binding of a large protein using a substrate density-controlled DNA chip.

N. Sugimoto, S. Nakano, D. Miyoshi, 2011, Analytical chemistry.

Aptamer carbon nanodot sandwich used for fluorescent detection of protein.

N. Sugimoto, X. Qu, J. Ren, 2012, The Analyst.

Photosensitizers Based on G-Quadruplex Ligand for Cancer Photodynamic Therapy

D. Miyoshi, K. Kawauchi, Takeru Torii, 2020, Genes.

G-quartet, G-quadruplex, and G-wire regulated by chemical stimuli.

N. Sugimoto, D. Miyoshi, 2011, Methods in molecular biology.

Osmolyte-Enhanced Protein Synthesis Activity of a Reconstituted Translation System.

H. Noji, K. Tabata, D. Miyoshi, 2019, ACS synthetic biology.

RNA phase separation–mediated direction of molecular trafficking under conditions of molecular crowding

D. Miyoshi, Kazuki Kohata, 2020, Biophysical Reviews.

Structural transition of d(G4T4G4) from antiparallel to parallel G-quartet induced by divalent cations.

N. Sugimoto, A. Nakao, D. Miyoshi, 2001, Nucleic acids research. Supplement.

Sequence and solvent effects on telomeric DNA bimolecular G-quadruplex folding kinetics.

N. Sugimoto, D. Miyoshi, Adrien Marchand, 2013, The journal of physical chemistry. B.

Metal sensitive and DNA concentration dependent structural rearrangement of short oligonucleotide into large suprastructures

D. Miyoshi, S. Tyagi, Anju Singh, 2018, Journal of biomolecular structure & dynamics.

Label-free colorimetric and quantitative detection of cancer marker protein using noncrosslinking aggregation of Au/Ag nanoparticles induced by target-specific peptide probe.

Li Wu, Xiaogang Qu, Naoki Sugimoto, 2011, Biosensors & bioelectronics.

Regulation of DNA nucleases by molecular crowding

N. Sugimoto, D. Miyoshi, Y. Sasaki, 2007, Nucleic acids research.

A DNA duplex with extremely enhanced thermal stability based on controlled immobilization on gold nanoparticles.

N. Sugimoto, S. Nakano, Y. Shibata, 2006, Nano letters.

Cationic Porphyrin Induced a Telomeric DNA to G-Quadruplex Form in Water

N. Sugimoto, D. Miyoshi, T. Miyazawa, 2008, Bioinorganic chemistry and applications.

A reversible B-A transition of DNA duplexes induced by synthetic cationic copolymers.

N. Sugimoto, A. Maruyama, S. Nakano, 2016, Chemical communications.

Ultrasensitive and Selective Detection of a Prognostic Indicator in Early‐Stage Cancer Using Graphene Oxide and Carbon Nanotubes

N. Sugimoto, Xiaohui Wang, Yujun Song, 2010 .

Structural Polymorphism of Telomeric DNA Regulated by pH and Divalent Cation

N. Sugimoto, D. Miyoshi, S. Matsumura, 2003, Nucleosides, nucleotides & nucleic acids.

DNA G-quadruplex detection system employing a protein fibril ligand

N. Sugimoto, T. Nakabayashi, N. Ohta, 2015 .

The iron chelator deferriferrichrysin induces paraptosis via extracellular signal‐related kinase activation in cancer cells

T. Nishikata, T. Katsuno, Yemima Budirahardja, 2023, Genes to cells : devoted to molecular & cellular mechanisms.

Structural switch of telomere DNA by pH and monovalent cation.

N. Sugimoto, D. Miyoshi, Mamiko Inoue, 2005, Nucleic acids symposium series.

In vitro assays predictive of telomerase inhibitory effect of G-quadruplex ligands in cell nuclei.

N. Sugimoto, D. Miyoshi, T. Murashima, 2014, The journal of physical chemistry. B.