Aleksandar Poleksic

发表

Large-Scale Off-Target Identification Using Fast and Accurate Dual Regularized One-Class Collaborative Filtering and Its Application to Drug Repurposing

Di He, Lei Xie, Hanghang Tong, 2016, PLoS Comput. Biol..

Mining FDA resources to compute population-specific frequencies of adverse drug reactions

Lei Xie, Paul Gray, Aleksandar Poleksic, 2017, 2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Protein Structure Alignment: Is There Room for Improvement?

Aleksandar Poleksic, Mauricio Arriagada, A. Poleksic, 2012, 2012 Sixth International Conference on Complex, Intelligent, and Software Intensive Systems.

Protein side-chain modeling using a combination of knowledge and energy based approaches

Aleksandar Poleksic, Joseph F. Danzer, 2007, BIOCOMP.

Predicting serious rare adverse reactions of novel chemicals

Lei Xie, Aleksandar Poleksic, 2017 .

Overcoming sparseness of biomedical networks to identify drug repositioning candidates

Aleksandar Poleksic, A. Poleksic, 2020, bioRxiv.

Optimizing the size of the sequence profiles to increase the accuracy of protein sequence alignments generated by profile-profile algorithms

Aleksandar Poleksic, Mark A. Fienup, A. Poleksic, 2008, Bioinform..

Visualizing Protein Structural Superpositions and Alignments with StructAlignViewer

Aleksandar Poleksic, Harald Kattnig, 2012, 2012 16th International Conference on Information Visualisation.

Improved genome-scale multi-target virtual screening via a novel collaborative filtering approach to cold-start problem

Lei Xie, Hansaim Lim, Aleksandar Poleksic, 2016, Scientific Reports.

Island method for estimating the statistical significance of profile-profile alignment scores

Aleksandar Poleksic, 2008, BMC Bioinformatics.

Convergent Island Statistics: a fast method for determining local alignment score significance

Aleksandar Poleksic, Joseph F. Danzer, Kevin Hambly, 2005, Bioinform..

Protein Structure Alignment in Subquadratic Time

Aleksandar Poleksic, A. Poleksic, 2010, BIONETICS.

Improved Algorithms for Matching r-Separated Sets with Applications to Protein Structure Alignment

Aleksandar Poleksic, 2013, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

On Complexity of Protein Structure Alignment Problem under Distance Constraint

Aleksandar Poleksic, 2012, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Algorithms for optimal protein structure alignment

Aleksandar Poleksic, A. Poleksic, 2009, Bioinform..

Optimal Pairwise Alignment of Fixed protein Structures in Subquadratic Time

Aleksandar Poleksic, A. Poleksic, 2011, J. Bioinform. Comput. Biol..

STRUCTFAST: Protein sequence remote homology detection and alignment using novel dynamic programming and profile–profile scoring

Aleksandar Poleksic, William A Goddard, Derek A Debe, 2006, Proteins.

Optimizing a Widely Used Protein Structure Alignment Measure in Expected Polynomial Time

Aleksandar Poleksic, A. Poleksic, 2011, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

SPINFAST: Using structure alignment profiles to enhance the accuracy and assess the reliability of protein side‐chain modeling

Aleksandar Poleksic, Derek A Debe, Joseph F Danzer, 2006, Proteins.

Predicting serious rare adverse reactions of novel chemicals

Lei Xie, Aleksandar Poleksic, Lei Xie, 2017, bioRxiv.

A polynomial time algorithm for computing the area under a GDT curve

Aleksandar Poleksic, 2015, Algorithms for Molecular Biology.

A Different Look at the Quality of Modeled Three-Dimensional protein Structures

Aleksandar Poleksic, Joseph F. Danzer, Mark A. Fienup, 2008, J. Bioinform. Comput. Biol..

Utilizing twilight zone sequence similarities to increase the accuracy of protein 3D structure comparison

Paul Gray, Aleksandar Poleksic, 2014, BCB.

Towards a better measure of protein 3D model quality

Aleksandar Poleksic, 2015, 2015 IEEE International Conference on Electro/Information Technology (EIT).

Exploring Landscape of Drug-Target-Pathway-Side Effect Associations

Lei Xie, Hansaim Lim, Aleksandar Poleksic, 2018, AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science.

Overcoming sparseness of biomedical networks to identify drug repositioning candidates.

Aleksandar Poleksic, 2021, IEEE/ACM transactions on computational biology and bioinformatics.

On the Difference in Quality between Current Heuristic and Optimal Solutions to the Protein Structure Alignment Problem

Aleksandar Poleksic, Mauricio Arriagada, A. Poleksic, 2012, BioMed research international.

Ran's C-terminal, basic patch, and nucleotide exchange mechanisms in light of a canonical structure for Rab, Rho, Ras, and Ran GTPases.

Jun S. Liu, Aleksandar Poleksic, Jun S Liu, 2003, Genome research.

Detecting Non-Trivial Protein Structure Relationships

Aleksandar Poleksic, 2016 .

Heterogeneous Multi-Layered Network Model for Omics Data Integration and Analysis

Lei Xie, Shuo Zhang, Aleksandar Poleksic, 2020, Frontiers in Genetics.