M. Germann

发表

Structural Impact of Single Ribonucleotide Residues in DNA

F. Storici, Marina G Evich, Alexander M. Spring-Connell, 2016, Chembiochem : a European journal of chemical biology.

Synthesis and structural determination of multidentate 2,3-dithiol-stabilized Au clusters.

Zhenghua Tang, Baohua Wu, Gangli Wang, 2010, Journal of the American Chemical Society.

NMR spectroscopic and enzymatic studies of DNA hairpins containing mismatches in the EcoRI recognition site.

H. Vogel, J. Van De Sande, J. Varnum, 1998, Biochemistry and cell biology = Biochimie et biologie cellulaire.

Design of Peptides with High Affinities for Heparin and Endothelial Cell Proteoglycans*

M. Germann, T. Twardowski, B. Kung, 2000, The Journal of Biological Chemistry.

Purification and characterization of recombinant forms of TCL-1 and MTCP-1 proteins.

C. Croce, J. Varnum, M. Germann, 1998, Protein expression and purification.

Understanding Integrase-DNA Interactions in Retroviruses Through 3'-processing

M. Germann, Zachary E. Ferris, 2018 .

The smell of moulting: N-acetylglucosamino-1,5-lactone is a premoult biomarker and candidate component of the courtship pheromone in the urine of the blue crab, Callinectes sapidus

C. Derby, J. Kubanek, M. Germann, 2014, Journal of Experimental Biology.

STRUCTURAL, DYNAMIC, AND ENZYMATIC PROPERTIES OF MIXED α/β-OLIGONUCLEOTIDES CONTAINING POLARITY REVERSALS

J. Van De Sande, J. Aramini, M. Germann, 2001 .

Conformational dynamics in mixed α/β-oligonucleotides containing polarity reversals: A molecular dynamics study using time-averaged restraints*

N. Ulyanov, J. Aramini, M. Germann, 2000 .

The importance of fitting in: conformational preference of selenium 2′ modifications in nucleosides and helical structures

R. Thompson, M. Germann, Zhen Huang, 2015, Journal of biomolecular structure & dynamics.

First Structure of a Designed Minor Groove Binding Heterocyclic Cation that Specifically Recognizes Mixed DNA Base Pair Sequences.

W. Wilson, M. Germann, N. Harika, 2017, Chemistry.

Translational diffusion constants of the amino acids: measurement by NMR and their use in modeling the transport of peptides.

S. Allison, M. Germann, Tierre Turner, 2007, The journal of physical chemistry. A.

Self-Consistent Parameterization of DNA Residues for the Non-Polarizable AMBER Force Fields

G. Poon, M. Germann, Kenneth Huang, 2022, Life.

Spectral and Hydrodynamic Analysis of West Nile Virus RNA-Protein Interactions by Multiwavelength Sedimentation Velocity in the Analytical Ultracentrifuge.

H. Cölfen, M. Brinton, M. Germann, 2017, Analytical chemistry.

A general method for the purification of synthetic oligodeoxyribonucleotides containing strong secondary structure by reversed-phase high-performance liquid chromatography on PRP-1 resin.

J. Van De Sande, R. Pon, M. Germann, 1987, Analytical biochemistry.

Non‐enzymatic glycation of type I collagen diminishes collagen–proteoglycan binding and weakens cell adhesion

R. Sanderson, I. Chervoneva, J. Last, 2008, Journal of cellular biochemistry.

Identification of the catalytic base for alcohol activation in choline oxidase.

G. Gadda, K. Rungsrisuriyachai, M. Germann, 2015, Biochemistry.

Reactions of salicylaldehydes with alkyl cyanoacetates on the surface of solid catalysts: syntheses of 4H-chromene derivatives

J. Aramini, Ziwei Huang, M. Germann, 2000 .

Intrinsic disorder controls two functionally distinct dimers of the master transcription factor PU.1

J. Aramini, Suela Xhani, G. Poon, 2020, Science Advances.

Characterization of secondary amide peptide bond isomerization: thermodynamics and kinetics from 2D NMR spectroscopy.

M. Germann, Jin Zhang, 2011, Biopolymers.

"Direct" detection and separation of DNA using nanoporous alumina filters.

I. Vlassiouk, S. Smirnov, A. Krasnoslobodtsev, 2004, Langmuir : the ACS journal of surfaces and colloids.

Molecular identification of alarm cues in the defensive secretions of the sea hare Aplysia californica

C. Derby, M. Germann, C. Kicklighter, 2007, Animal Behaviour.

Microscopic rearrangement of bound minor groove binders detected by NMR.

W. Wilson, D. Boykin, M. Germann, 2012, The journal of physical chemistry. B.

Solution structure and thermodynamics of 2',5' RNA intercalation.

N. Hud, M. Germann, E. D. Horowitz, 2009, Journal of the American Chemical Society.

Selective G-Quadruplex DNA Recognition by a New Class of Designed Cyanines

Eric A. Owens, Rupesh K. Nanjunda, W. Wilson, 2013, Molecules.

Molecular Basis for Sequence‐Dependent Induced DNA Bending

Shuo Wang, W. Wilson, M. Germann, 2013, Chembiochem : a European journal of chemical biology.

Characterization of a parallel-stranded DNA hairpin.

H. Vogel, J. Van De Sande, R. Pon, 1989, Biochemistry.

Length-dependent formation of parallel-stranded DNA in alternating AT segments.

J. Van De Sande, R. Pon, M. Germann, 1990, Biochemistry.

Simplifying DNA NMR spectroscopy by silencing GH8 and AH8 resonances

M. Germann, Ekaterina M. Stroeva, S. Nguyen, 2018, Journal of Molecular Structure.

Substituting Inosine for Guanosine in DNA: Structural and Dynamic Consequences

M. Germann, Zachary E. Ferris, Qiu-Shi Li, 2019, Natural Product Communications.

Reactions of Salicylaldehydes with Alkyl Cyanoacetates on the Surface of Solid Catalysts: Syntheses of 4H‐Chromene Derivatives.

J. Aramini, Ziwei Huang, M. Germann, 2000 .

Microwave-assisted synthesis and antibacterial propensity of N′-s-benzylidene-2-propylquinoline-4-carbohydrazide and N′-((s-1H-pyrrol-2-yl)methylene)-2-propylquinoline-4-carbohydrazide motifs

O. Ajani, M. Germann, D. Aderohunmu, 2018 .

Parallel stranded DNA.

J. Van De Sande, E. von Kitzing, T. Jovin, 1988, Science.

Effect of methylation on the side‐chain pKa value of arginine

Y. Zheng, Marina G Evich, M. Germann, 2016, Protein science : a publication of the Protein Society.

Antiparallel DNA duplex formation between alternating α d(GA)n and β d(GA)n sequences

J. Van De Sande, M. Germann, B. Kalisch, 1998 .

Synthesis of a 2'-Se-uridine phosphoramidite and its incorporation into oligonucleotides for structural study.

M. Germann, J. Saloň, Zhen Huang, 2005, Organic letters.

Isolation and Structural Elucidation of Novel Mycosporine‐Like Amino Acids as Alarm Cues in the Defensive Ink Secretion of the Sea Hare Aplysia californica

C. Derby, M. Germann, C. Kicklighter, 2011 .

Impact of modified ribose sugars on nucleic acid conformation and function

Marina G Evich, Alexander M. Spring-Connell, M. Germann, 2017 .

Conformational analysis and complete assignment of the proton and carbon NMR spectra of ouabain and ouabagenin

H. Vogel, M. Germann, D. Mcintyre, 1990 .

Calculation of immobilized enzyme reaction progress curves from nested ordered-sequential rate expressions

J. Brouillette, P. Irwin, K. B. Hicks, 1999 .

Recognition of Damaged DNA: Structure and Dynamic Markers

Christopher N. Johnson, M. Germann, A. Spring, 2012, Medicinal research reviews.

Cloning, characterization and expression of escapin, a broadly antimicrobial FAD-containing l-amino acid oxidase from ink of the sea hare Aplysia californica

C. Derby, Paul M Johnson, M. Germann, 2005, Journal of Experimental Biology.

Imino proton NMR guides the reprogramming of A•T specific minor groove binders for mixed base pair recognition

W. Wilson, D. Boykin, Ananya Paul, 2016, Nucleic acids research.

Facilitated assignment of adenine H2 resonances in oligonucleotides using homonuclear long-range couplings.

M. Germann, A. Spring, Jin Zhang, 2009, Journal of the American Chemical Society.

[9] Parallel-stranded duplex DNA: An NMR perspective

H. Vogel, M. Germann, N. Zhou, 1995 .

Solution structure of the parallel-stranded hairpin d(T8C4A8) as determined by two-dimensional NMR.

H. Vogel, N. Pattabiraman, J. Van De Sande, 1993, Biochemistry.

Relative stability of parallel- and antiparallel-stranded duplex DNA.

J. Van De Sande, M. Germann, M W Germann, 1988, Biochemistry.

NMR studies of DNA duplexes containing alpha-anomeric nucleotides and polarity reversals

J. Aramini, M. Germann, 1998 .

Homooligomeric dA.dU and dA.dT sequences in parallel and antiparallel strand orientation: consequence of the 5-methyl groups on stability, structure and interaction with the minor groove binding drug Hoechst 33258.

J. Van De Sande, M. Germann, B. Kalisch, 1996, Journal of biomolecular structure & dynamics.

Cyclic Enzymatic Solid Phase Synthesis of Isotopically Labeled DNA Oligonucleotides

M. Germann, Subrata H. Mishra, A. Khan, 2009, Nucleosides, Nucleotides & Nucleic Acids.

Using NMR and molecular dynamics to link structure and dynamics effects of the universal base 8-aza, 7-deaza, N8 linked adenosine analog

F. Seela, Marina G Evich, Alexander M. Spring-Connell, 2016, Nucleic acids research.

Structure of a DNA duplex that contains alpha-anomeric nucleotides and 3'-3' and 5'-5' phosphodiester linkages: coexistence of parallel and antiparallel DNA.

J. Van De Sande, J. Aramini, R. Pon, 1996, Biochemistry.

Structural basis of the RNase H1 activity on stereo regular borano phosphonate DNA/RNA hybrids.

Christopher N. Johnson, M. Germann, B. Shaw, 2011, Biochemistry.

Solution conformation of purine-pyrimidine DNA octamers using nuclear magnetic resonance, restrained molecular dynamics and NOE-based refinement.

B. Sykes, J. Van De Sande, J. Baleja, 1990, Journal of molecular biology.

Spectroscopic and thermodynamic studies of DNA duplexes containing alpha-anomeric C, A, and G nucleotides and polarity reversals: coexistence of localized parallel and antiparallel DNA.

J. Van De Sande, J. Aramini, M. Germann, 1997, Biochemistry.

Mycosporine-like amino acids are multifunctional molecules in sea hares and their marine community

C. Derby, M. Germann, C. Kicklighter, 2011, Proceedings of the National Academy of Sciences.

Identification of cis-Acting Nucleotides and a Structural Feature in West Nile Virus 3′-Terminus RNA That Facilitate Viral Minus Strand RNA Synthesis

William G. Davis, M. Brinton, M. Germann, 2013, Journal of Virology.

MD and NMR analyses of choline and TMA binding to duplex DNA: on the origins of aberrant sequence-dependent stability by alkyl cations in aqueous and water-free solvents.

G. Portella, M. Orozco, N. Hud, 2014, Journal of the American Chemical Society.

Characterization of the cellular immune response in hepatitis C virus infection

J. Dou, Xinjian Zhang, M. Germann, 2009, Medicinal research reviews.

Thermodynamic profiling of HIV RREIIB RNA-zinc finger interactions.

M. Germann, A. Spring, Subrata H. Mishra, 2009, Journal of molecular biology.

Sequence context effect for hMSH2-hMSH6 mismatch-dependent activation

Christopher N. Johnson, R. Fishel, M. Germann, 2009, Proceedings of the National Academy of Sciences.

Nonproteolytic Roles of 19S ATPases in Transcription of CIITApIV Genes

M. Germann, A. Truax, A. Spring, 2014, PloS one.

RNA intrusions change DNA elastic properties and structure.

E. Riedo, F. Storici, A. Bongiorno, 2014, Nanoscale.

Second Generation G-Quadruplex Stabilizing Trimethine Cyanines.

Eric A. Owens, D. Hamelberg, W. Wilson, 2019, Bioconjugate chemistry.

Mechanistic studies of choline oxidase with betaine aldehyde and its isosteric analogue 3,3-dimethylbutyraldehyde.

G. Gadda, M. Germann, F. Fan, 2006, Biochemistry.

Solution structure of a DNA duplex containing an alpha-anomeric adenosine: insights into substrate recognition by endonuclease IV.

J. Aramini, R. Cunningham, R. Pon, 2004, Journal of molecular biology.

The Concerted Contribution of the S4-S5 Linker and the S6 Segment to the Modulation of a Kv Channel by 1-Alkanols

M. Covarrubias, Aditya Bhattacharji, M. Germann, 2006, Molecular Pharmacology.

Right- and left-handed (Z) helical conformations of the hairpin d(C-G)5T4(C-G)5 monomer and dimer.

J. Van De Sande, M. Germann, K. Schoenwaelder, 1985, Biochemistry.

Comparison of the B- and Z-form hairpin loop structures formed by d(CG)5T4(CG)5.

C. C. Hardin, I. Tinoco, J. Van De Sande, 1988, Biochemistry.

The cloning and overexpression of a cruciform binding protein from Ustilago maydis.

D. Gerhold, M. Rice, E. Kmiec, 1997, Biochimica et biophysica acta.

NMR Structure Determination for Oligonucleotides

Marina G Evich, Alexander M. Spring-Connell, M. Germann, 2018, Current protocols in nucleic acid chemistry.

QUADRUPOLAR METAL ION NMR STUDY OF OVOTRANSFERRIN AT 17.6 T

H. Vogel, J. Aramini, M. Germann, 1994 .

Field-Dependent Aluminum-27 NMR Studies of the Transferrins: An Approach for the Study of Metal Ion Binding Sites in Larger Proteins

H. Vogel, J. Aramini, M. Germann, 1993 .

RNA facilitates RecA-mediated DNA pairing and strand transfer between molecules bearing limited regions of homology

E. Kmiec, B. Mullah, R. Vinayak, 1996, Molecular and General Genetics MGG.

Non-Invasive Imaging of Neuroanatomical Structures and Neural Activation with High-Resolution MRI

Jens Herberholz, Donald H. Edwards, D. H. Edwards, 2011, Front. Behav. Neurosci..

DNA sequence context conceals α-anomeric lesions.

Christopher N. Johnson, R. Cunningham, M. Germann, 2012, Journal of molecular biology.

Following Plant Metabolismin Vivoand in Extracts with Heteronuclear Two-Dimensional Nuclear Magnetic Resonance Spectroscopy

Y. Shachar-Hill, P. Pfeffer, M. Germann, 1996 .

Following plant metabolism in vivo and in extracts with heteronuclear two-dimensional nuclear magnetic resonance spectroscopy.

Y. Shachar-Hill, P. Pfeffer, M. Germann, 1996, Analytical biochemistry.

Performance of cryogenic probes as a function of ionic strength and sample tube geometry.

Galen Collier, M. Voehler, M. Germann, 2006, Journal of magnetic resonance.

Conformational analysis of the hydrophobic peptide αs1-casein(136–196)

H. M. Farrell, M. Germann, M. H. Alaimo, 1999 .

A Single-Point Mutation in d-Arginine Dehydrogenase Unlocks a Transient Conformational State Resulting in Altered Cofactor Reactivity.

I. Weber, D. Hamelberg, A. Iyer, 2021, Biochemistry.

Solution structures and characterization of human immunodeficiency virus Rev responsive element IIB RNA targeting zinc finger proteins.

M. Germann, Subrata H. Mishra, M. K. Darby, 2006, Biopolymers.

Solution Structures of Casein Peptides: NMR, FTIR, CD, and Molecular Modeling Studies of αs1-Casein, 1–23

E. M. Brown, P. Fox, J. Aramini, 2001, Journal of protein chemistry.

Bioactive Peptide Design Based on Protein Surface Epitopes

Ute Koch, Jimin Gao, J. Aramini, 1997, The Journal of Biological Chemistry.

Solution structure of a DNA.RNA hybrid containing an alpha-anomeric thymidine and polarity reversals: d(ATGG-3'-3'-alphaT-5'-5'-GCTC). r(gagcaccau).

J. Aramini, M. Germann, 1999, Biochemistry.

A cyclic heptapeptide mimics CD4 domain 1 CC’ loop and inhibits CD4 biological function

J. Aramini, Jimin Gao, T. Satoh, 2002 .

Alcohol and anesthetic action at the gate of a voltage-dependent K+ channel

M. Covarrubias, Aditya Bhattacharji, M. Germann, 2005 .

Microwave assisted synthesis of N’-(Alkanylidene)-2-propylquinoline-4-carbohydrazide derivatives and their antimicrobial potential

O. Ajani, M. Germann, S. J. Olorunshola, 2017 .

Insight into the modulation of Shaw2 Kv channels by general anesthetics: structural and functional studies of S4-S5 linker and S6 C-terminal peptides in micelles by NMR.

M. Covarrubias, M. Germann, Xiaoguang Qu, 2013, Biochimica et biophysica acta.

Multiple DNA-binding modes for the ETS family transcription factor PU.1

G. Poon, Marina G Evich, M. Germann, 2017, The Journal of Biological Chemistry.

Purification and characterization of recombinant forms of murine Tcl1 proteins.

C. Croce, J. Rothstein, M. Germann, 2000, Protein expression and purification.

Parallel-Stranded Nucleic Acids and Their Interaction with Intercalating and Groove Binding Drugs

M. Germann, B. Kalisch, J. H. Sande, 1990 .

Perturbation of DNA hairpins containing the EcoRI recognition site by hairpin loops of varying size and composition: physical (NMR and UV) and enzymatic (EcoRI) studies.

H. Vogel, P. Lundberg, J. Van De Sande, 1990, Nucleic acids research.